mRNA_H-elongata_contig198275.5550.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198275.5550.1
Unique NamemRNA_H-elongata_contig198275.5550.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Match: A0A7S6UA28_9STRA (30S ribosomal protein S16, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA28_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.750e-49
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKADIQIDN 240
            MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKADIQIDN
Sbjct:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKADIQIDN 80
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BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Match: A0A8F0F7A6_9PHAE (Ribosomal protein S16 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.350e-31
Identity = 49/76 (64.47%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKADI 228
            MLK+R KRCGRKK+PFYRIV+M+NKTKRDG  +E+LG+YNP+ KTF +NR+RT+ RL+ G  PT+V+KNL +K++I
Sbjct:    1 MLKIRFKRCGRKKQPFYRIVLMDNKTKRDGNVVEELGFYNPLNKTFQINRVRTIIRLDNGAQPTEVLKNLFRKSNI 76
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BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Match: A0A141BSI6_9PHAE (30S ribosomal protein S16, chloroplastic n=16 Tax=Fucales TaxID=3009 RepID=A0A141BSI6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.320e-29
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKADI 228
            MLK+R KR GRKK+PFY+IVVM+ +TKRDGKA+E+LG+YNPITKT ++N  RT+ RL+ GV PT+VVKNLL+K+ I
Sbjct:    1 MLKIRFKRTGRKKQPFYKIVVMDVRTKRDGKALEELGFYNPITKTLNINCERTISRLKNGVQPTEVVKNLLRKSSI 76
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BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Match: D1J702_ECTSI (30S ribosomal protein S16, chloroplastic n=32 Tax=Phaeophyceae TaxID=2870 RepID=D1J702_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.380e-28
Identity = 50/74 (67.57%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKA 222
            MLK+R KR GRKK+PFYRIVVM+ KTKRDGK +E+LG+Y+PI KTF +NR RT++RL  GV PT+VVKNLL+++
Sbjct:    1 MLKIRFKRGGRKKQPFYRIVVMDVKTKRDGKVLEELGFYDPIRKTFHINRERTIKRLANGVQPTEVVKNLLRRS 74
[Close]
BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Match: A0A1I9LW03_9PHAE (30S ribosomal protein S16, chloroplastic n=2 Tax=Chordariaceae TaxID=66220 RepID=A0A1I9LW03_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.490e-27
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKA 222
            MLK+R KR GRKK+PFYRIVVM+ KTKRDGKA+E+LG+Y+P+ KTF +NR RT+ RL  GV PT+VVKNLL +A
Sbjct:    1 MLKIRFKRGGRKKQPFYRIVVMDVKTKRDGKALEELGFYDPMNKTFQINRERTIIRLANGVQPTEVVKNLLIRA 74
[Close]
BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Match: A0A2I4Q2M7_9PHAE (30S ribosomal protein S16, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2M7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.110e-27
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKADI 228
            MLK+R KR GRKK PFYRIVV+NN+TKRDGK IE+LG YNP+TK   +N +RT+ RLE G  PT+VVKNL +K+ +
Sbjct:    1 MLKIRFKRGGRKKHPFYRIVVINNRTKRDGKVIEELGSYNPLTKIIKINLVRTIIRLEDGAQPTEVVKNLFRKSSL 76
[Close]
BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Match: A0A8F0FAS3_9PHAE (Ribosomal protein S16 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAS3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.110e-27
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKA 222
            MLK+R K CGRKK+PFYRIVVM+ +TKRDGK +E+LG+YNP+ KT  +NR RT+ RL  G  PT+VVKNLL+K 
Sbjct:    1 MLKIRFKLCGRKKQPFYRIVVMDVRTKRDGKVLEELGFYNPMNKTLHINRERTISRLNHGAQPTEVVKNLLRKT 74
[Close]
BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Match: B7T1T4_VAULI (30S ribosomal protein S16, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1T4_VAULI)

HSP 1 Score: 103 bits (256), Expect = 3.550e-27
Identity = 49/76 (64.47%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKADI 228
            MLKLRLKRCGRKK+PFY+IVVMN  ++RDG AIE+LG+YNP+ KTF +N+ RT+ RL+QGV PT  + +LL+K +I
Sbjct:    1 MLKLRLKRCGRKKQPFYKIVVMNANSRRDGFAIEELGFYNPLNKTFKINKGRTIYRLKQGVQPTATLIDLLKKVNI 76
[Close]
BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Match: A0A1X9PU17_9RHOD (30S ribosomal protein S16, chloroplastic n=1 Tax=Corynoplastis japonica TaxID=700918 RepID=A0A1X9PU17_9RHOD)

HSP 1 Score: 101 bits (252), Expect = 1.290e-26
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKADI 228
            M+K+RLKRCGRKK P YRIV+MN+ +KRDG+A+E+LG+YNPIT   SLN  +  +RL+QG  PT  VKN+LQKA I
Sbjct:    1 MIKIRLKRCGRKKYPVYRIVLMNSMSKRDGRALEELGFYNPITNAISLNLSQLEKRLQQGAQPTNTVKNMLQKAQI 76
[Close]
BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Match: A0A8E5XRF9_9PHAE (30S ribosomal protein S16, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRF9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.260e-26
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    1 MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNRLRTLERLEQGVIPTQVVKNLLQKA 222
            MLK+RLKR GRKK+PFYRIV+M+  TKRDGKAIE+LG+YNP+ K F +NR R + R++ G  PTQ+V NLL+K+
Sbjct:    1 MLKIRLKRFGRKKKPFYRIVLMDASTKRDGKAIEELGFYNPLNKIFYINRERIIMRIKTGAQPTQIVSNLLKKS 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198275.5550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6UA28_9STRA1.750e-49100.0030S ribosomal protein S16, chloroplastic n=1 Tax=S... [more]
A0A8F0F7A6_9PHAE9.350e-3164.47Ribosomal protein S16 n=1 Tax=Protohalopteris sp. ... [more]
A0A141BSI6_9PHAE6.320e-2967.1130S ribosomal protein S16, chloroplastic n=16 Tax=... [more]
D1J702_ECTSI7.380e-2867.5730S ribosomal protein S16, chloroplastic n=32 Tax=... [more]
A0A1I9LW03_9PHAE1.490e-2768.9230S ribosomal protein S16, chloroplastic n=2 Tax=C... [more]
A0A2I4Q2M7_9PHAE2.110e-2764.4730S ribosomal protein S16, chloroplastic n=1 Tax=D... [more]
A0A8F0FAS3_9PHAE2.110e-2764.86Ribosomal protein S16 n=1 Tax=Desmarestia aculeata... [more]
B7T1T4_VAULI3.550e-2764.4730S ribosomal protein S16, chloroplastic n=1 Tax=V... [more]
A0A1X9PU17_9RHOD1.290e-2663.1630S ribosomal protein S16, chloroplastic n=1 Tax=C... [more]
A0A8E5XRF9_9PHAE5.260e-2663.5130S ribosomal protein S16, chloroplastic n=1 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198275contigH-elongata_contig198275:553..795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue4.4e-20
Seed eggNOG ortholog2880.D1J702
Preferred namerps16
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal protein s16
EggNOG OGsCOG0228@1,KOG3419@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Hectar predicted targeting categorymitochondrion
Exons1
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.8252645-CDS-H-elongata_contig198275:552..7951622930119.8252645-CDS-H-elongata_contig198275:552..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198275 553..795 +
1691679288.32963-CDS-H-elongata_contig198275:552..7951691679288.32963-CDS-H-elongata_contig198275:552..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198275 553..795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198275.5550.1prot_H-elongata_contig198275.5550.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198275 553..795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198275.5550.1

>prot_H-elongata_contig198275.5550.1 ID=prot_H-elongata_contig198275.5550.1|Name=mRNA_H-elongata_contig198275.5550.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MLKLRLKRCGRKKRPFYRIVVMNNKTKRDGKAIEQLGYYNPITKTFSLNR
LRTLERLEQGVIPTQVVKNLLQKADIQIDN*
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mRNA from alignment at H-elongata_contig198275:553..795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198275.5550.1 ID=mRNA_H-elongata_contig198275.5550.1|Name=mRNA_H-elongata_contig198275.5550.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig198275:553..795+ (Himanthalia elongata Himel1 dioecious)
ATGTTAAAATTAAGATTAAAACGCTGTGGAAGAAAAAAACGACCATTTTA
TCGTATTGTAGTAATGAATAATAAAACTAAGCGAGATGGAAAAGCTATTG
AACAATTAGGTTATTATAATCCAATAACTAAGACTTTTTCTCTAAATAGA
TTACGCACACTTGAAAGATTAGAACAGGGTGTAATTCCTACACAAGTTGT
AAAAAATTTATTACAAAAAGCAGATATACAAATCGATAACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig198275:553..795+

>mRNA_H-elongata_contig198275.5550.1 ID=mRNA_H-elongata_contig198275.5550.1|Name=mRNA_H-elongata_contig198275.5550.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig198275:553..795+ (Himanthalia elongata Himel1 dioecious)
ATGTTAAAATTAAGATTAAAACGCTGTGGAAGAAAAAAACGACCATTTTA
TCGTATTGTAGTAATGAATAATAAAACTAAGCGAGATGGAAAAGCTATTG
AACAATTAGGTTATTATAATCCAATAACTAAGACTTTTTCTCTAAATAGA
TTACGCACACTTGAAAGATTAGAACAGGGTGTAATTCCTACACAAGTTGT
AAAAAATTTATTACAAAAAGCAGATATACAAATCGATAACTGAATGTTAA
AATTAAGATTAAAACGCTGTGGAAGAAAAAAACGACCATTTTATCGTATT
GTAGTAATGAATAATAAAACTAAGCGAGATGGAAAAGCTATTGAACAATT
AGGTTATTATAATCCAATAACTAAGACTTTTTCTCTAAATAGATTACGCA
CACTTGAAAGATTAGAACAGGGTGTAATTCCTACACAAGTTGTAAAAAAT
TTATTACAAAAAGCAGATATACAAATCGATAACTGA
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