mRNA_H-elongata_contig19799.5539.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Match: D8LEN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN7_ECTSI) HSP 1 Score: 390 bits (1003), Expect = 5.180e-118 Identity = 287/525 (54.67%), Postives = 348/525 (66.29%), Query Frame = 1
Query: 22 MQSRLFSLEEENASLKRVVEFELPQEVESLKHQARRKTPLPLPKTYTEEADDQLEEAERRAKTAVVQALSDHAEGRGGGGSDGILRVEEGLYHDLQAARDELSAQKAACRDLEGQILERDAANMELRFDLEASAAEAARLRRRTSELHADARXXXXXXXXXXXXGVSVNDATSRRAGGRFKRERDLEGVVEALKRVTEKLRGENERLKRTAGDGGARAESEKSAREAKKRAAALQEKVDRLAERAKEADAAVLKLAQKQDLINQLRRKLKGREEDLRNLQQRIEDLAKTKALLLAELETANQRLIASDRDNCS----KPPPVSAS----REIAAARAESATLKEQVLHQAEIIDQFRQNEENYDPYRAHGQQGGGIAAPLSGAGSAAEVEEAVEAAEAVAEAAQHEADQLRQRLAESERELRRMERRMA--------GGAKEAGGVEPVNSGVLSSSG----GAAAATSTVTITARLEEENGRXXXXXXXXSTELQAFDLEFFEEIEDLKYKYSEAARKLRHYEQ 1536
++SRLF LEEENASLKR E ELP+EVESLKHQ R AERRAK V +ALS + GG ILR EEGLYHDLQAA+DE+ A KA RDLEGQ+L+RD+ N+ELRFDLEA AE RLRRR EL A + G + SR AGGRFKRERDLEGVV+ALKRVT+KLRGEN+RL+R AG+GG +AE+E+SAREAKK+AAAL+E+VD+L RAK+AD+AV KLAQKQ+L+NQLRR LK R+ ++ Q+R EDLA+TK LL AELE ANQRL+ASDRD+ S +PP +A+ RE+ A+ E+ATL++QV HQ+E++D+ R + N D AA +G GS EAVEAA A AE+AQ EAD+LR RLAE+EREL+RMERR A GG A + + +L SG G+ RL++EN XXXXXXXX L AFD EFFEEIEDLKYKYSEA RKLR +EQ
Sbjct: 377 LRSRLFQLEEENASLKRTAEMELPREVESLKHQVRXXXXXXXXXXXX------XXXAERRAKVVVARALSSDSNSGGG-----ILRAEEGLYHDLQAAKDEVVALKAIGRDLEGQVLQRDSVNVELRFDLEARTAETERLRRRARELQAALKTGG---------GTAGAKDGSRPAGGRFKRERDLEGVVDALKRVTDKLRGENDRLRRMAGEGGGKAEAERSAREAKKKAAALREEVDKLTARAKDADSAVQKLAQKQELVNQLRRTLKVRDATIKTFQERAEDLAETKTLLSAELEAANQRLVASDRDSRSSGRSRPPAAAAAAHTARELEDAKREAATLRQQVQHQSEVVDRLR-GDMNRDREET--------AAAAAGPGS-----EAVEAARAPAESAQDEADELRDRLAETERELQRMERRCASAMSTASRGGEGAADSFDRGSKDLLRVSGTGGLGSRGDGEGRLTQDRLKKENXXXXXXXXXXXXXLGAFDHEFFEEIEDLKYKYSEAVRKLRQFEQ 867
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Match: A0A6H5KTB3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB3_9PHAE) HSP 1 Score: 369 bits (947), Expect = 1.360e-104 Identity = 285/533 (53.47%), Postives = 338/533 (63.41%), Query Frame = 1
Query: 1 SAEDTEEMQSRLFSLEEENASLKRVVEFELPQEVESLKHQARRKTPLPLPKTYTEEADDQLEEAERRAKTAVVQALSDHAEGRGGGGSDGILRVEEGLYHDLQAARDELSAQKAACRDLEGQILERDAANMELRFDLEASAAEAARLRRRTSELHADARXXXXXXXXXXXXGVSVNDATSRRAGGRFKRERDLEGVVEALKRVTEKLRGENERLKRTAGDGGARAESEKSAREAKKRAAALQEKVDRLAERAKEADAAVLKLAQKQDLINQLRRKLKGREEDLRNLQQRIEDLAKTKALLLAELETANQRLIASDRDN---CSKPPP------VSASREIAAARAESATLKEQVLHQAEIIDQFRQNEENYDPYRAHGQQGGGIAAPLSGAGSAAEVEEAVEAAEAVAEAAQHEADQLRQRLAESERELRRMERRMA--------GGAKEAGGVEPVNSGVLSSSG----GAAAATSTVTITARLEEENGRXXXXXXXXSTELQAFDLEFFEEIEDLKYKYSEAARKLRHYEQ 1536
S E T++++SRLF LEEENASLKRV E ELP+EVESLKHQ + RAK V +ALS GG GILR EEGLYHDLQAA+DE+ A KA RDLEGQ+LERD+AN+ELRFDLEA AE RLRRRT EL A + XXXXX G SR AGGRFKRERDLEGVV+ALKRVT+KLRGEN+RL+R AG+GG +AE+++SAREAKK+AA L+E+VDRL RAK+AD+AV KLAQKQDL+NQLRR LK R+ ++ Q R EDLA+ K LL AELE ANQRL+ASDRD+ C P +RE+ A+ E+ATL++QV HQ+E++D+ R + N D A G GS EA+EAA A RLAE+EREL+RMERR A GG A + + +L SG G+ RL EEN XXXXXXXX EL AFD EFFEEIEDLKYKYSEA RKLRH+EQ
Sbjct: 2072 SPEVTDDLRSRLFQLEEENASLKRVAEMELPREVESLKHQ------VXXXXXXXXXXXXXXXXXXXRAKVVVARALSSDGNS---GGDGGILRAEEGLYHDLQAAKDEVVALKAIGRDLEGQVLERDSANVELRFDLEARTAETERLRRRTRELQAALKTGGXXXXXGAKDG-------SRPAGGRFKRERDLEGVVDALKRVTDKLRGENDRLRRMAGEGGGKAEAQRSAREAKKKAAELREEVDRLTARAKDADSAVQKLAQKQDLVNQLRRTLKVRDATIKTFQDRAEDLAEAKTLLSAELEAANQRLVASDRDSRSSCRSRPXXXXXXXAHTARELEDAKREAATLRQQVQHQSEVVDRLR-GDMNRDREET---------AAAVGPGS-----EALEAARAAXXXXXXXXXXXXDRLAETERELQRMERRCASAMSTASRGGEGAADSFDGGSKDLLRVSGTGGLGSRGDGEGRLTQDRLREENXXXXXXXXXXXXELGAFDHEFFEEIEDLKYKYSEAVRKLRHFEQ 2573
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Match: A0A7S1UJF9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJF9_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.320e-27 Identity = 92/244 (37.70%), Postives = 138/244 (56.56%), Query Frame = 1
Query: 217 VQALSDHAEGRGGGGSDGILRVEEGLYHDLQAARDELSAQKAACRDLEGQILERDAANMELRFDLEASAAEAARLRRRTSELHADARXXXXXXXXXXXXGVSVNDATSRRAGGRFKRERDLEGVVEALKRVTEKLRGENERLKRTAGDGGARAESEKSAREAKKRAAALQEKVDRLAERAKEADAAVLKLAQKQDLINQLRRKLKGREEDLRNLQQRIEDLAKTKALLLAELETANQRLIASDR 948
+Q D G GG G+ +R E + L AR+ L A R+ EG++LE+DA NMEL F++ A+ + R RR +EL X R+AGGRF RERDLEGVV+ALKRV +KL+ ENERL+R A + +E+E+ AR+A+ R A LQ ++ L RA + A +LA K + QLRR +K R+ +L++L+ ++++L +T+ L AN+R++ +R
Sbjct: 155 LQRQLDDLTGGGGEGAVTDMRRSEARFTQLSQAREGLEALNKRLREAEGKLLEKDAKNMELTFEVSAANTRSERFARRVAELEG---VINRGGAGKGGXXXXXXXGKGRKAGGRFNRERDLEGVVDALKRVVDKLKSENERLRRGAAESTKVSEAERRARDARGRVAELQAELTALRTRAAAGEEASQRLASKTEQSAQLRRAIKRRDGELKDLRDKVDELERTRQNLEEAANNANKRVLQLER 395
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Match: A0A7S2SBL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBL1_9STRA) HSP 1 Score: 110 bits (275), Expect = 4.400e-21 Identity = 129/426 (30.28%), Postives = 189/426 (44.37%), Query Frame = 1
Query: 274 LRVEEGLYHDLQAARDELSAQKAACRDLEGQILERDAANMELRFDLEASAAEAARLRRRTSELHADARXXXXXXXXXXXXGVSVNDATSRRAGGRFKRERDLEGVVEALKRVTEKLRGENERLKRTAGDGGARAESEKSAREAKKRAAALQEKVDRLAERAKEADAAVLKLAQKQDLINQLRRKLKGREEDLRNLQQRIEDLAKTKALLLAELETANQRLIASDRDNCSKPPPVSASREIAAARAESATLKEQV-LHQAEI-IDQFRQNEENYDPYRAHGQQGGGI-AAPLSGAGSAAEVEEAVEAAEAVAEAAQHEADQLRQRLAESERELRRMERRMAGGAKEAGGVEPVNSGVLSSSGGAAAATSTVTITARLEEENGRXXXXXXXXSTELQAFDLEFFEEIEDLKYKYSEAARKLRHYEQGS 1542
LR E + L++ RDE A + L+ QIL +++ +EL+FDL E RLRRR EL A G SR G RFKRERDLE VVE L++V +L+ ENERLK D + +E+ AR+AK A L+E++ L RA A+ ++ KLAQ+ + ++QL+R ++ ++E+ I+ + V + R A + K++ L QA+ ID+ +Q R GQ GG PL G ++L L ++ RE++R+E R + + + G L+ RL +EN + EL AFDL+FFEEIEDLKYKY+EA +KLR +E S
Sbjct: 372 LRESEDNFLKLESLRDEADALVREKKTLQLQILRYESSTLELQFDLNLRDQEVERLRRRVKELEAS--------YDAVSTGGGGGAKASRAPGERFKRERDLESVVEGLQKVVNQLKRENERLKSGGADQTKLSAAERRARDAKSEATGLREELVSLRGRAATAEDSMSKLAQRNEQVSQLKRTIRQKDEE-------IQAHTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVDSIRAGAGSGPGRGDGKDRASLAQAQHEIDRLKQQ------LRRQGQATGGADTGPLQGR-----------------------VNELSADLEDARREIQRLEDRARASERRTSSLSDADVGELT----------------RLRDENAKL-------KQELSAFDLDFFEEIEDLKYKYAEAVKKLRQFEAAS 730
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Match: A0A835Z7Q7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q7_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.130e-18 Identity = 77/168 (45.83%), Postives = 99/168 (58.93%), Query Frame = 1
Query: 352 DLEGQILERDAANMELRFDLEASAAEAARLRRRTSELH---------ADARXXXXXXXXXXXXGVSVNDATSRRAGGRFKRERDLEGVVEALKRVTEKLRGENERLKRTAGDGGA--RAESEKSAREAKKRAAALQEKVDRLAERAKEADAAVLKLAQKQDLINQLRR 822
+LE ++LERDAA + RFDLEA+A+EA RL+RR E+ A A GV+ D +R GGRF RERDLE VVEALKRV EKLR EN+RLKR A A +A + R +++ L ++V L RA AD + ++AQ+QDLI QLRR
Sbjct: 44 ELEDELLERDAAAIAARFDLEAAASEAERLQRRHREMQEALRAANARAGADPASPPRFPPHACGVAAADDATRLGGGRFNRERDLETVVEALKRVVEKLRAENDRLKRGAAAATAQGKAGGSDAERRLRRQNEELAQEVAALKARAAAADQSSQQIAQRQDLIGQLRR 211
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Match: A0A7S3XY01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY01_HETAK) HSP 1 Score: 92.4 bits (228), Expect = 7.010e-17 Identity = 110/337 (32.64%), Postives = 155/337 (45.99%), Query Frame = 1
Query: 541 RRAGGRFKRERDLEGVVEALKRVTEKLRGENERLKRTAGDGGARAESEKSAREAKKRAAALQEKVDRLAERAKEADAAVLKLAQKQDLINQLRRKLKGREEDLRNLQQRIEDLAKTKALLLAELETANQRLIASDRDNCSKPPPVSASREIAAAR---AESATLKEQVL-HQAEIIDQFRQNEENYDPYRAHGQQGGGIAAPLSGAGSAAEVEEAVEAAEAVAEAAQHEADQLRQRLAESERELRRMERRMAGGAKEAGGVEPVNSGVLSSSGGAAAATSTVTITARLEEENGRXXXXXXXXSTELQAFDLEFFEEIEDLKYKYSEAARKLRHYEQG 1539
R AG RF+RERDLEGVV++L+RV EKL+ ENERL+R AGD A+++ A +LAQ++D + LR++++ R++++ +LQ++I ++K LL ELE AN RL SA+ EIA R +E A+ + +QA +I + R+ EE G+ A L A+A E Q A + + RL + E RR G L EEEN R + ELQAFDL+FFEEIEDLK+KY+EA RKL+ Y+ G
Sbjct: 5 RAAGDRFQRERDLEGVVDSLRRVIEKLKAENERLRRGAGDRAKVADADXXXXXXXXXXXXXXXXXXXXXXXXXXGGDASQRLAQQRDAVAHLRKQMRSRDKEIESLQKQITQQDQSKGLLSGELERANIRL-------------QSANEEIARLRKGQSEQASASRMLSDNQATLIQKNREIEELK-----------GVVASLR------------TKAQATGEGGQRWAAE-KARLLDELAEARR-------------GXXXXXXXXLR------------------EEENARLREENAKLARELQAFDLDFFEEIEDLKFKYAEAQRKLQAYQNG 273
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Match: A0A2R5G9X9_9STRA (Centrosomal protein of 290 kDa n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9X9_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.020e-14 Identity = 96/300 (32.00%), Postives = 140/300 (46.67%), Query Frame = 1
Query: 190 AERRAKTAVVQALSDHAEG------RGGGGSDGILRVEEGLYHDLQAARDELSAQKAACRDLEGQILERDAANMELRFDLEASAAEAARLRRRT-SELHADARXXXXXXXXXXXXGVSVNDATSRRAGGRFKRERDLEGVVEALKRVTEKLRGENERLKRTAGDGGARAESEKSAREAKKRAAALQEKVDRLAERAKEADAAVLKLAQKQDLINQLRRKLKGREEDLRNLQQRIEDLAKTKALLLAELETANQRLIASDRDNCSKPPPVSASREIAAARAESATLKEQVLHQAEIIDQFR 1068
A+RRA A + L + E G+D L++ E Y R +L+ + + LE +L+RD +ELRF++E ++E R RR S+L + S ATSR G RFKRERDLE VVE++K+V KL+ ENERLKRT + +K R K+ AL D L +RA + + K + QD + LRR+ + E D+ + R L L+ EL+ A+ RL A + P + A R+ E L+ +V Q +ID R
Sbjct: 2115 ADRRASMARARDLEEELESFRLRKRHRSSGADS-LQIAEDQYGREDEIRQQLAQVRKEAQGLESDLLDRDNTILELRFEMEQLSSEVERCRRDDESKLPSSG------------TSPSSRGATSRAPGERFKRERDLENVVESMKKVVSKLQAENERLKRTHTSSARYGDLQKQVRALKQENQALVSARDTLQDRAVKYSESSAKAIRLQDAVRGLRRQTRALETDVEKERARATALWSENQKLVEELQQASDRLSA-------RVPRLEAGRD-----QEVDDLRRKVREQTRVIDALR 2389
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Match: A0A7R9U7K0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7K0_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.230e-13 Identity = 69/206 (33.50%), Postives = 102/206 (49.51%), Query Frame = 1
Query: 253 GGGSDGILRVEEGLYHDLQAARDELSAQKAACRDLEGQILERDAANMELRFDLEASAAEAARLRRRTSELHADARXXXXXXXXXXXXGVSVNDATSRRAGGRFKRERDLEGVVEALKRVTEKLRGENERLKRTAGDGGARAESEKSAREAKKRAAALQEKVDRLAERAKEADAAVLKLAQKQDLINQLRRKLKGREEDLRNLQQRI 870
GGG LR E + L AR+ + + +D E +ILE +A +MEL+F++ A+ R RR SEL R + +R+ GGRFKRERDLEGVV+ALKRV R A + E+E+ LQ ++ L RA + A +LA K + + QLRR LK R+ +L++L++++
Sbjct: 55 GGGDVSELRKSESRFSQLAQARETIESLNKRLQDAESKILEGEAKSMELQFEVSAATTRNERFSRRISELEEAVRQSEVA--------TAEGSTLARKPGGRFKRERDLEGVVDALKRVXXXXXXXXXXXXRGAAESTKVNEAERRXXXXXXXXXELQAELTGLRTRAAAGEEASQRLASKTEQLAQLRRALKRRDGELKSLREKV 252
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Match: A0A7S2SL49_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SL49_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 2.630e-13 Identity = 88/306 (28.76%), Postives = 146/306 (47.71%), Query Frame = 1
Query: 16 EEMQSRLFSLEEENASLKRVVEFELPQEVESLKHQARRKTPLPLPKTYTEEADDQLEEAERRAKTAVVQALSDHAEGRGGGGSDGILRVEEGLYHDLQAARDELSAQKAACRDLEGQILERDAANMELRFDLEASAAEAARLRRRTSELHADARXXXXXXXXXXXXGVSVNDATSRRAGGRFKRERDLEGVVEALKRVTEKLRGENERLKRTAGDGGARAESEKSAREAKKRAAALQEKVDRLAERAKEADAAVLKLAQKQDLINQLRRKLKGREEDLRNLQQRIEDLAKTKALLLAELETANQRL 933
+E++ L +N L+R VE E E+ +L+ + + + E +++L+ + R K R GG S L++ E Y R +L+ + A R LE ++LERD +ELRF+LE E R R+ + + G R AG FKRERDLE VVE++K+V KL+ ENERLKR+ +E K +E ++ L+ + L+ R ++ A K+ + +D + L+++++ R+ L + ++++L A L E+E ANQRL
Sbjct: 2009 DELEQELELKTRQNRDLRRQVEVEQRGEINTLRRE------VSATRARAIELEEELDIIKSRKK-------------RSGGDS---LQIAEEHYAREDEIRHQLAESRKAERALEAELLERDNTILELRFELE---QETERQRKPSRPV----------------LGEGKISEPRRGAGELFKRERDLENVVESMKKVVSKLQSENERLKRSTSGNARYSELGKRVKELERERDQLETSNEALSRRVQQNSEASTKVIRLEDAVKSLKKQIRSRDTALEKEKSKLDNLRAENARLTGEIEEANQRL 2273
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Match: A0A6S8BP76_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8BP76_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.480e-5 Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 517 VSVNDATSRRAGGRFKRERDLEGVVEALKRVTEKLRGENERLKRTAGDGGARAESEKSAREAKKRAAALQEKVDRLAERAKEADAAVLKLAQKQDLINQLRRKLKGREEDL 849
+S RRAG RFKRERDLE V++ALKR+ KL+GEN RLKR++ E K RE + L+E R LKLA+ +++ + ++ L+ ++++L
Sbjct: 248 ISSRSPVERRAGERFKRERDLENVIDALKRLVNKLQGENSRLKRSSASNAKYVELIKQVRELRTANERLKESTAEKIRRDTSTSEMSLKLARMKNISSNQKKLLRDKDKEL 358 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19799.5539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19799.5539.1 >prot_H-elongata_contig19799.5539.1 ID=prot_H-elongata_contig19799.5539.1|Name=mRNA_H-elongata_contig19799.5539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=511bp MQSRLFSLEEENASLKRVVEFELPQEVESLKHQARRKTPLPLPKTYTEEAback to top mRNA from alignment at H-elongata_contig19799:1154..6573- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19799.5539.1 ID=mRNA_H-elongata_contig19799.5539.1|Name=mRNA_H-elongata_contig19799.5539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5420bp|location=Sequence derived from alignment at H-elongata_contig19799:1154..6573- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19799:1154..6573- >mRNA_H-elongata_contig19799.5539.1 ID=mRNA_H-elongata_contig19799.5539.1|Name=mRNA_H-elongata_contig19799.5539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3066bp|location=Sequence derived from alignment at H-elongata_contig19799:1154..6573- (Himanthalia elongata Himel1 dioecious)back to top |