prot_H-elongata_contig1979.5536.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1979.5536.1
Unique Nameprot_H-elongata_contig1979.5536.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length774
Homology
BLAST of mRNA_H-elongata_contig1979.5536.1 vs. uniprot
Match: A0A6H5JDF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDF5_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 3.610e-76
Identity = 279/747 (37.35%), Postives = 337/747 (45.11%), Query Frame = 0
Query:  123 MILWKHECSRYTPPSHLGCHPNHLSTRHPESRPPSPLRVIRPFLAPR-----------RQEKASSVVPLRSEADVQVHNIECIHINPDQSGGKGEA------RPRSAVPRLGESSLHAAKLDDDGEQAKPQTSRLGA-----GFKARGYVRRCGSARG--------RSISTTLVTQEEDEASSKEKIE-----DIYDXXXXXXXXXXXXLDNRISIMERRFSSLGRERPISAIGCDGMSTLVGDESGIPLPIRMPSTTR-----------SARYPPRA------------------------PQRGSISTATDNSG-RAGDGIDRDIGL------------RPTLVIR-RPTSAPVDDSLFDIHRQ------SDPMAALHARRMRLRISSAGGDKLRPATGVQHGLSEASAPQQQRQPKQHASRDVTTAVPSWKNAASGGERPLSSATVEFAGGRYTTEGVAESHGQ-----DIESAAG--------------SRPSSVAFRRWLEARPSARSVVSAVSSARTIGLDDPELVHLQVEMESRRGGASDVTLARMEEFYSTIVQKNDMLKSQQGCWGERGRSKSPLKNRGGSKMNRTPTSARSSKCGSRSAPRSKXXXXXXXXASVTRGNRKKRPASSRRRRNPSKGKGEGKRGGTVSALKKTYTSAKAYMVENFPSGEDEQASLVLLGMEQEMECRQLSAALSRAGILVSGETLRRALVIPTDHPLETCLAGLPLPMEGLQDKPFPLP 760
            M+LW+HECSRY   S +G HPNH S  HP SRP S   ++RPF A R           +Q++ASS +P RS+   Q   +     N     G G A      RPRSA+PRL      AA+ DD+  + K   S   A     G  A                    RS STT  +Q       +  +E     D++DXXXXXXXX    L+ RISIME RFS++GRERP+SA   D      GD   +    +  S  R           + + PPRA                        P R  ++++   +G RAG+       L            +P  VIR RPTSAP D S     RQ      +DPMA LH RRMRL++SS G    RP                           V TAVPSW     GG RPLSSAT    G        A  +       D E   G              SRPSS AFR W++ARP ARS VSAVSSART+G+DDPELVHLQ+EMESRRGG S+ TL RME+ Y+ +V KN ++             + P + RG       P                 XXXXXXXX                               GT  A  K YTSA A+M E+FPS             E+E ECR+ S ALSRAG+ VS E LRRALVIPTD PLETCLAGLP P EGL+D PFP P
Sbjct:    1 MVLWRHECSRYASSSRIGYHPNHPSASHPTSRPSSAATILRPFSAGRVPQQSNDHDHHQQQRASSALPPRSQPFGQDSGLYEAGQNRTIEEGAGRADLTPSVRPRSAIPRL--QRADAAEPDDNNSRPKRGVSASAARGNDGGVDATSTXXXXXXXXXXXXXXXXMRSASTTR-SQSPVNNQDRSSVEGWGGDDVFDXXXXXXXXDDGELEARISIMESRFSTVGRERPVSA--ADDGDVTAGDGGNLDAERQRWSGARRTGAPDAPLSTATQRPPRAXXXXXXXXXXXXXXXXXQMFSRSRPARRHVTSSARAAGTRAGEDSREQQRLLFPLKTFVSGQKQPPRVIRSRPTSAPADGSSLPQERQRGDVAVNDPMAPLHTRRMRLQMSSGGS---RPPAEXXXXXXXX-----------XXXAGVKTAVPSWDRNVDGGTRPLSSATDGAPGAAXXXXXXAAVYDDNVADGDTEEGGGRFKPNEITPPMNNHSRPSSAAFRGWIKARPGARSAVSAVSSARTLGMDDPELVHLQLEMESRRGGMSESTLVRMEDHYTAVVLKNTIV------------PRRPQQQRG------RPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTA-ASGKVYTSAGAFMAEHFPS-------------EEEQECRKASEALSRAGLSVSSEALRRALVIPTDRPLETCLAGLPHPTEGLRDAPFPPP 696          
BLAST of mRNA_H-elongata_contig1979.5536.1 vs. uniprot
Match: D8LKE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE2_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.540e-44
Identity = 134/268 (50.00%), Postives = 152/268 (56.72%), Query Frame = 0
Query:  507 SRPSSVAFRRWLEARPSARSVVSAVSSARTIGLDDPELVHLQVEMESRRGGASDVTLARMEEFYSTIVQKNDMLKSQQGCWGERGRSKSPLKNRGGSKMNRTPTSARSSKCGSRSAPRSKXXXXXXXXASVTRGNRKKRPASSRRRRNPSKGKGEGKRGGTVSALKKTYTSAKAYMVENFPSGEDEQASLVLLGMEQEMECRQLSAALSRAGILVSGETLRRALVIPTDHPLETCLAGLPLPMEGLQDKPFPLPAPAEAAFARRAHPP 774
            SRPSS AFR W++ARP ARS VSAVSSART+G+DDPELVHLQ+EMESRRGG S+ TLARME+ Y+ +V KN                + P + RG       P S R             XXXXXXXX                               GT  A  K YTSA A+M E+FPS  +E+  + LLGMEQE ECR  S ALSR G+ VS E LRRALVIPTD PLETCLAGLP P EGL+D PFP   P      R  HPP
Sbjct:  257 SRPSSAAFRGWIKARPGARSAVSAVSSARTLGMDDPELVHLQLEMESRRGGMSESTLARMEDHYTAVVLKNTSA------------PRRPQQQRG------RPASPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTA-ASGKVYTSAGAFMAEHFPS--EEKQGVSLLGMEQEEECRNASDALSRVGLSVSNEALRRALVIPTDRPLETCLAGLPHPTEGLRDAPFP--PPPTFTTLRNPHPP 501          
BLAST of mRNA_H-elongata_contig1979.5536.1 vs. uniprot
Match: A0A836C9T7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.740e-5
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 0
Query:  508 RPSSVAFRRWLEARPSARSVVSAVSSARTIGLDDPELVHLQVEMESRRGGA-SDVTLARMEEFYS 571
            R  S  F  WL  RP+A   VSAVSSART GL+DP L + Q+E+ESRR    S   LAR++  YS
Sbjct:  532 RSQSAGFAAWLRRRPAAARAVSAVSSARTEGLEDPLLAYQQLELESRRAPRLSAAALARVDAAYS 596          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1979.5536.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDF5_9PHAE3.610e-7637.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKE2_ECTSI1.540e-4450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C9T7_9STRA2.740e-552.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 287..307
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..774
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1979contigH-elongata_contig1979:1312..5458 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1979.5536.1mRNA_H-elongata_contig1979.5536.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1979 1312..5458 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1979.5536.1 ID=prot_H-elongata_contig1979.5536.1|Name=mRNA_H-elongata_contig1979.5536.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=774bp
MRAKGSTGCAPAVTVLTNIAGAVSVLIDQTGINAGRRLRSIMLPDNPFNP
FRNRRSKKSTRSQIDNTTTKVPVLRAGATSERNQLIQSPSEATAAAVLVT
SITHGVRKALHQWTEKRSLRQSMILWKHECSRYTPPSHLGCHPNHLSTRH
PESRPPSPLRVIRPFLAPRRQEKASSVVPLRSEADVQVHNIECIHINPDQ
SGGKGEARPRSAVPRLGESSLHAAKLDDDGEQAKPQTSRLGAGFKARGYV
RRCGSARGRSISTTLVTQEEDEASSKEKIEDIYDDIYEDLDDEDDELDNR
ISIMERRFSSLGRERPISAIGCDGMSTLVGDESGIPLPIRMPSTTRSARY
PPRAPQRGSISTATDNSGRAGDGIDRDIGLRPTLVIRRPTSAPVDDSLFD
IHRQSDPMAALHARRMRLRISSAGGDKLRPATGVQHGLSEASAPQQQRQP
KQHASRDVTTAVPSWKNAASGGERPLSSATVEFAGGRYTTEGVAESHGQD
IESAAGSRPSSVAFRRWLEARPSARSVVSAVSSARTIGLDDPELVHLQVE
MESRRGGASDVTLARMEEFYSTIVQKNDMLKSQQGCWGERGRSKSPLKNR
GGSKMNRTPTSARSSKCGSRSAPRSKGSSRGAKKASVTRGNRKKRPASSR
RRRNPSKGKGEGKRGGTVSALKKTYTSAKAYMVENFPSGEDEQASLVLLG
MEQEMECRQLSAALSRAGILVSGETLRRALVIPTDHPLETCLAGLPLPME
GLQDKPFPLPAPAEAAFARRAHPP
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