mRNA_H-elongata_contig197875.5535.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A8B6EWY7_MYTGA (Nuclear pore complex protein Nup188 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EWY7_MYTGA) HSP 1 Score: 83.6 bits (205), Expect = 3.070e-17 Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 1
Query: 4 KERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS 441
++RF + FE +VF+P F + DL YG ++ LG+HY ++ +EL EW K ++ + + + + D L ++ QFPN L++I I P SS + +RGFS QNIIK+K R +L + L+ LMR+S
Sbjct: 15 RDRFPNNNNFEAFSVFEPSNFPSSVADLPRYGEQQLECLGDHYN--------LINQEELQVEWGILKYLIFNNYKGLSFA---DLLTAIISRKDQFPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDALDQLMRIS 149
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A8B6H8G0_MYTGA (DUF4371 domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6H8G0_MYTGA) HSP 1 Score: 85.5 bits (210), Expect = 1.400e-16 Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query: 4 KERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS 441
++RF IFE +VF+P F + DL YG ++ LG+HY ++ +EL EW K ++ + + + + D L ++ QFPN L++I I P SS + +RGFS QNIIK+K R +L + L+ LMR+S
Sbjct: 484 RDRFPDNKIFEAFSVFEPSNFPSSVADLPRYGEQQLECLGDHYN--------LINQEELQVEWGILKYLIFNNYKGLSFA---DLLTAIISRKDQFPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDSLDQLMRIS 618
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A6J8DRE5_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DRE5_MYTCO) HSP 1 Score: 77.0 bits (188), Expect = 5.160e-14 Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 1
Query: 7 ERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS 441
+RF IFE +VF+ F + DL YG ++ LG+HY V+ +EL EW ++ + + + + D L ++ QFPN L++I + P SS + +RGFS QNIIK+K R +L + L+ +MR+S
Sbjct: 125 DRFPDNKIFEAFSVFESSNFPSSVADLPCYGEQQLECLGDHYS--------IVNQEELQIEWGIFNYLIFNSYKGLSFA---DLLTAIISRKDQFPNAISLMEISRVLPVSSVECERGFSRQNIIKTKLRCSLGIDALDQIMRIS 258
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A2Z6R8B9_9GLOM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R8B9_9GLOM) HSP 1 Score: 76.6 bits (187), Expect = 1.560e-13 Identity = 42/143 (29.37%), Postives = 76/143 (53.15%), Query Frame = 1
Query: 13 FAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYG-KKHGS----VPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEM 426
F +++++ + DP+ +E+ L YG++++K+L EH+G +KH S V ++ E +EWQ K+IM +R I + +FPN+ LV I ++ P S+ +R FS + K++ RN L++ L+M
Sbjct: 278 FPYNELYDSMKILDPKELPLQESALSSYGIEELKLLCEHFGNQKHKSNGTPVQPLINSSECKKEWQMVKHIMKSIRNYDIIEGWHHIWSTCPQFKNKFPNVNILVNIVLLVPLSNANVERVFSQHKLTKTRLRNKLNVKTLDM 420
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A8H3R5N1_9GLOM (WD repeat protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3R5N1_9GLOM) HSP 1 Score: 76.6 bits (187), Expect = 1.780e-13 Identity = 42/143 (29.37%), Postives = 76/143 (53.15%), Query Frame = 1
Query: 13 FAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYG-KKHGS----VPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEM 426
F +++++ + DP+ +E+ L YG++++K+L EH+G +KH S V ++ E +EWQ K+IM +R I + +FPN+ LV I ++ P S+ +R FS + K++ RN L++ L+M
Sbjct: 278 FPYNELYDSMKILDPKELPLQESALSSYGIEELKLLCEHFGNQKHKSNGTPVQPLINSSECKKEWQMVKHIMKSIRNYDIIEGWHHIWSTCPQFKNKFPNVNILVNIVLLVPLSNANVERVFSQHKLTKTRLRNKLNVKTLDM 420
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: UPI001B88E74F (zinc finger protein 862-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88E74F) HSP 1 Score: 74.7 bits (182), Expect = 8.060e-13 Identity = 47/144 (32.64%), Postives = 77/144 (53.47%), Query Frame = 1
Query: 10 RFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS 441
RF +++ ++ ++ DPQ N+L YGV ++ ML +H+ V+P EL EW++ K + +R+ +T D L A L L+ I + P SS + +RGFS QN+IK++ R A++L L+ LMR+S
Sbjct: 482 RFPDMELRDSMSILDPQNLPC--NNLSSYGVSELSMLSKHFDG-------AVNPTELVSEWEWFK---VYTKRNHRQATPTDLLKDAA--------LVNLINISCVLPVSSVECERGFSRQNLIKTRLRTAMTLETLDCLMRIS 605
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A8B6FAZ1_MYTGA (TTF-type domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FAZ1_MYTGA) HSP 1 Score: 71.6 bits (174), Expect = 9.560e-12 Identity = 49/148 (33.11%), Postives = 70/148 (47.30%), Query Frame = 1
Query: 4 KERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRS---AAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRL 438
K+RF IFE +F+P F +DL YG + L HY D D +EW K I+ + R A + T V + + QF N+ L++I + P SS + +RGFS QN+IK+K R S L+ LMR+
Sbjct: 458 KDRFPDSKIFEAFTIFEPASFPVNISDLPNYGTSQMSTLTSHY--------TSFDEDSTLQEWSTIKYIIFNNFRHLSPAELLTEVTPMKE------QFVNIVNLIEIASVLPVSSVECERGFSRQNLIKTKLRCKTSTDTLDQLMRI 591
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A1X7TW65_AMPQE (TTF-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TW65_AMPQE) HSP 1 Score: 71.2 bits (173), Expect = 1.340e-11 Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 1
Query: 46 VFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRL 438
+F P + + ++L YG ++ +L Y K VD + + EW K M + S ++ +D L + Q+PNL L +I ++ P SS +RGFS QN IKSK RN L +HL+ML+R+
Sbjct: 583 IFPPSKLPLDNSELATYGDTELLLLCSKYRSK-------VDEEAVLTEWDGFKQNMKNNFISITMAELLDHLVNTDSLKLQYPNLSILAQIVLVFPASSVDCERGFSTQNHIKSKLRNRLGHLHLDMLLRI 706
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: UPI0003F0D16E (zinc finger protein 862-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D16E) HSP 1 Score: 65.5 bits (158), Expect = 1.370e-9 Identity = 40/136 (29.41%), Postives = 69/136 (50.74%), Query Frame = 1
Query: 4 KERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDD--IKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNAL 405
+ERF V + + ++FDP +++ + + ++ L HY + +E+AREW+ KN+M+D + S+ T++ D F NLYKL I +I P S+ +RGFSA + +K+ RN +
Sbjct: 578 RERFPDVHLLQAFSIFDPSLLEKDDSGRLDDTLQQQHLETLSTHYS-------DILSSEEMAREWEMMKNLMVDDQHSSFTCTQMMNKVVKQYKD-VFVNLYKLAVIGLIVPMSTADCERGFSALSRVKTTLRNRM 705
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: C3Z810_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z810_BRAFL) HSP 1 Score: 60.5 bits (145), Expect = 8.130e-8 Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 106 DIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKAL---NGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS 441
+++ L YG VD + +EW + +M +RR T D + K L +G FPNL KL + + P + +RGFS QN IK++ RNALS+ L++LMR++
Sbjct: 251 ELETLLAKYGGVEAYQFLTVDAAQARQEWGMVRQLMFRLRREDDTLT-TDTMWKELERVHGSELFPNLLKLATVGRLLPMHTADCERGFSTQNRIKTRLRNALSVKRLDILMRIA 364 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig197875.5535.1 >prot_H-elongata_contig197875.5535.1 ID=prot_H-elongata_contig197875.5535.1|Name=mRNA_H-elongata_contig197875.5535.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp FKERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSback to top mRNA from alignment at H-elongata_contig197875:249..818+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig197875.5535.1 ID=mRNA_H-elongata_contig197875.5535.1|Name=mRNA_H-elongata_contig197875.5535.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at H-elongata_contig197875:249..818+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig197875:249..818+ >mRNA_H-elongata_contig197875.5535.1 ID=mRNA_H-elongata_contig197875.5535.1|Name=mRNA_H-elongata_contig197875.5535.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig197875:249..818+ (Himanthalia elongata Himel1 dioecious)back to top |