mRNA_H-elongata_contig197875.5535.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197875.5535.1
Unique NamemRNA_H-elongata_contig197875.5535.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A8B6EWY7_MYTGA (Nuclear pore complex protein Nup188 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EWY7_MYTGA)

HSP 1 Score: 83.6 bits (205), Expect = 3.070e-17
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 1
Query:    4 KERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS 441
            ++RF   + FE  +VF+P  F +   DL  YG   ++ LG+HY          ++ +EL  EW   K ++ +  +  + +   D L   ++   QFPN   L++I  I P SS + +RGFS QNIIK+K R +L +  L+ LMR+S
Sbjct:   15 RDRFPNNNNFEAFSVFEPSNFPSSVADLPRYGEQQLECLGDHYN--------LINQEELQVEWGILKYLIFNNYKGLSFA---DLLTAIISRKDQFPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDALDQLMRIS 149          
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A8B6H8G0_MYTGA (DUF4371 domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6H8G0_MYTGA)

HSP 1 Score: 85.5 bits (210), Expect = 1.400e-16
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query:    4 KERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS 441
            ++RF    IFE  +VF+P  F +   DL  YG   ++ LG+HY          ++ +EL  EW   K ++ +  +  + +   D L   ++   QFPN   L++I  I P SS + +RGFS QNIIK+K R +L +  L+ LMR+S
Sbjct:  484 RDRFPDNKIFEAFSVFEPSNFPSSVADLPRYGEQQLECLGDHYN--------LINQEELQVEWGILKYLIFNNYKGLSFA---DLLTAIISRKDQFPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDSLDQLMRIS 618          
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A6J8DRE5_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DRE5_MYTCO)

HSP 1 Score: 77.0 bits (188), Expect = 5.160e-14
Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 1
Query:    7 ERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS 441
            +RF    IFE  +VF+   F +   DL  YG   ++ LG+HY          V+ +EL  EW     ++ +  +  + +   D L   ++   QFPN   L++I  + P SS + +RGFS QNIIK+K R +L +  L+ +MR+S
Sbjct:  125 DRFPDNKIFEAFSVFESSNFPSSVADLPCYGEQQLECLGDHYS--------IVNQEELQIEWGIFNYLIFNSYKGLSFA---DLLTAIISRKDQFPNAISLMEISRVLPVSSVECERGFSRQNIIKTKLRCSLGIDALDQIMRIS 258          
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A2Z6R8B9_9GLOM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R8B9_9GLOM)

HSP 1 Score: 76.6 bits (187), Expect = 1.560e-13
Identity = 42/143 (29.37%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   13 FAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYG-KKHGS----VPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEM 426
            F   +++++  + DP+    +E+ L  YG++++K+L EH+G +KH S    V   ++  E  +EWQ  K+IM  +R    I       +       +FPN+  LV I ++ P S+   +R FS   + K++ RN L++  L+M
Sbjct:  278 FPYNELYDSMKILDPKELPLQESALSSYGIEELKLLCEHFGNQKHKSNGTPVQPLINSSECKKEWQMVKHIMKSIRNYDIIEGWHHIWSTCPQFKNKFPNVNILVNIVLLVPLSNANVERVFSQHKLTKTRLRNKLNVKTLDM 420          
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A8H3R5N1_9GLOM (WD repeat protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3R5N1_9GLOM)

HSP 1 Score: 76.6 bits (187), Expect = 1.780e-13
Identity = 42/143 (29.37%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   13 FAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYG-KKHGS----VPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEM 426
            F   +++++  + DP+    +E+ L  YG++++K+L EH+G +KH S    V   ++  E  +EWQ  K+IM  +R    I       +       +FPN+  LV I ++ P S+   +R FS   + K++ RN L++  L+M
Sbjct:  278 FPYNELYDSMKILDPKELPLQESALSSYGIEELKLLCEHFGNQKHKSNGTPVQPLINSSECKKEWQMVKHIMKSIRNYDIIEGWHHIWSTCPQFKNKFPNVNILVNIVLLVPLSNANVERVFSQHKLTKTRLRNKLNVKTLDM 420          
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: UPI001B88E74F (zinc finger protein 862-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88E74F)

HSP 1 Score: 74.7 bits (182), Expect = 8.060e-13
Identity = 47/144 (32.64%), Postives = 77/144 (53.47%), Query Frame = 1
Query:   10 RFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS 441
            RF  +++ ++ ++ DPQ      N+L  YGV ++ ML +H+          V+P EL  EW++ K   +  +R+   +T  D L  A         L  L+ I  + P SS + +RGFS QN+IK++ R A++L  L+ LMR+S
Sbjct:  482 RFPDMELRDSMSILDPQNLPC--NNLSSYGVSELSMLSKHFDG-------AVNPTELVSEWEWFK---VYTKRNHRQATPTDLLKDAA--------LVNLINISCVLPVSSVECERGFSRQNLIKTRLRTAMTLETLDCLMRIS 605          
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A8B6FAZ1_MYTGA (TTF-type domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FAZ1_MYTGA)

HSP 1 Score: 71.6 bits (174), Expect = 9.560e-12
Identity = 49/148 (33.11%), Postives = 70/148 (47.30%), Query Frame = 1
Query:    4 KERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRS---AAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRL 438
            K+RF    IFE   +F+P  F    +DL  YG   +  L  HY           D D   +EW   K I+ +  R    A + T V  + +      QF N+  L++I  + P SS + +RGFS QN+IK+K R   S   L+ LMR+
Sbjct:  458 KDRFPDSKIFEAFTIFEPASFPVNISDLPNYGTSQMSTLTSHY--------TSFDEDSTLQEWSTIKYIIFNNFRHLSPAELLTEVTPMKE------QFVNIVNLIEIASVLPVSSVECERGFSRQNLIKTKLRCKTSTDTLDQLMRI 591          
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: A0A1X7TW65_AMPQE (TTF-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TW65_AMPQE)

HSP 1 Score: 71.2 bits (173), Expect = 1.340e-11
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   46 VFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRL 438
            +F P +   + ++L  YG  ++ +L   Y  K       VD + +  EW   K  M +   S  ++  +D L    +   Q+PNL  L +I ++ P SS   +RGFS QN IKSK RN L  +HL+ML+R+
Sbjct:  583 IFPPSKLPLDNSELATYGDTELLLLCSKYRSK-------VDEEAVLTEWDGFKQNMKNNFISITMAELLDHLVNTDSLKLQYPNLSILAQIVLVFPASSVDCERGFSTQNHIKSKLRNRLGHLHLDMLLRI 706          
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: UPI0003F0D16E (zinc finger protein 862-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D16E)

HSP 1 Score: 65.5 bits (158), Expect = 1.370e-9
Identity = 40/136 (29.41%), Postives = 69/136 (50.74%), Query Frame = 1
Query:    4 KERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDD--IKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNAL 405
            +ERF  V + +  ++FDP     +++   +  +    ++ L  HY          +  +E+AREW+  KN+M+D + S+   T++         D  F NLYKL  I +I P S+   +RGFSA + +K+  RN +
Sbjct:  578 RERFPDVHLLQAFSIFDPSLLEKDDSGRLDDTLQQQHLETLSTHYS-------DILSSEEMAREWEMMKNLMVDDQHSSFTCTQMMNKVVKQYKD-VFVNLYKLAVIGLIVPMSTADCERGFSALSRVKTTLRNRM 705          
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Match: C3Z810_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z810_BRAFL)

HSP 1 Score: 60.5 bits (145), Expect = 8.130e-8
Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  106 DIKMLGEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKAL---NGDGQFPNLYKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS 441
            +++ L   YG         VD  +  +EW   + +M  +RR     T  D + K L   +G   FPNL KL  +  + P  +   +RGFS QN IK++ RNALS+  L++LMR++
Sbjct:  251 ELETLLAKYGGVEAYQFLTVDAAQARQEWGMVRQLMFRLRREDDTLT-TDTMWKELERVHGSELFPNLLKLATVGRLLPMHTADCERGFSTQNRIKTRLRNALSVKRLDILMRIA 364          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197875.5535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A8B6EWY7_MYTGA3.070e-1734.25Nuclear pore complex protein Nup188 n=1 Tax=Mytilu... [more]
A0A8B6H8G0_MYTGA1.400e-1634.93DUF4371 domain-containing protein n=2 Tax=Mytilus ... [more]
A0A6J8DRE5_MYTCO5.160e-1433.10Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
A0A2Z6R8B9_9GLOM1.560e-1329.37Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rh... [more]
A0A8H3R5N1_9GLOM1.780e-1329.37WD repeat protein n=1 Tax=Rhizophagus clarus TaxID... [more]
UPI001B88E74F8.060e-1332.64zinc finger protein 862-like n=1 Tax=Gigantopelta ... [more]
A0A8B6FAZ1_MYTGA9.560e-1233.11TTF-type domain-containing protein n=1 Tax=Mytilus... [more]
A0A1X7TW65_AMPQE1.340e-1133.59TTF-type domain-containing protein n=1 Tax=Amphime... [more]
UPI0003F0D16E1.370e-929.41zinc finger protein 862-like n=1 Tax=Saccoglossus ... [more]
C3Z810_BRAFL8.130e-833.91Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197875contigH-elongata_contig197875:249..818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score71.2
Seed ortholog evalue4.4e-10
Seed eggNOG ortholog400682.PAC_15711139
Preferred nameZNF862
EggNOG free text desc.ZnF_TTF
EggNOG OGs39XVR@33154,3BMWQ@33208,KOG1721@1,KOG1721@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930118.2169487-CDS-H-elongata_contig197875:248..5171622930118.2169487-CDS-H-elongata_contig197875:248..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197875 249..517 +
1691679287.6395326-CDS-H-elongata_contig197875:248..5171691679287.6395326-CDS-H-elongata_contig197875:248..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197875 249..517 +
1622930118.2291336-CDS-H-elongata_contig197875:646..8181622930118.2291336-CDS-H-elongata_contig197875:646..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197875 647..818 +
1691679287.6503227-CDS-H-elongata_contig197875:646..8181691679287.6503227-CDS-H-elongata_contig197875:646..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197875 647..818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197875.5535.1prot_H-elongata_contig197875.5535.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197875 249..818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197875.5535.1

>prot_H-elongata_contig197875.5535.1 ID=prot_H-elongata_contig197875.5535.1|Name=mRNA_H-elongata_contig197875.5535.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
FKERFAKVDIFENCAVFDPQRFSTEENDLFEYGVDDIKMLGEHYGKKHGS
VPQCVDPDELAREWQYAKNIMIDVRRSAAISTRVDALAKALNGDGQFPNL
YKLVKIYIIQPHSSTKYDRGFSAQNIIKSKARNALSLVHLEMLMRLS
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mRNA from alignment at H-elongata_contig197875:249..818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197875.5535.1 ID=mRNA_H-elongata_contig197875.5535.1|Name=mRNA_H-elongata_contig197875.5535.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at H-elongata_contig197875:249..818+ (Himanthalia elongata Himel1 dioecious)
TTCAAGGAGCGGTTCGCCAAGGTGGATATCTTCGAGAACTGTGCGGTGTT CGACCCGCAGCGGTTTTCCACCGAGGAGAACGACCTCTTCGAGTACGGTG TCGATGATATCAAGATGTTGGGAGAGCACTACGGCAAGAAGCACGGTAGT GTGCCACAGTGCGTTGACCCTGACGAGCTGGCTCGTGAGTGGCAGTACGC CAAGAACATCATGATCGATGTCAGACGCAGCGCAGCAATCTCCACAAGAG TGGACGCTCTCGCAAAGGCGTCTGAGGTGGAGGAATCAGTGGAGGATCCG ACCCTCGGACGCCCAATGAAGAAGGGAGAGCGATCGCGCAAGAGCTTCAG TGAAATGCTCATCAACTTGTACGTTGAATTCTGGAGAGGAGTCAAGAGTT TGAACGGGGACGGTCAATTCCCGAACCTCTACAAGCTGGTGAAGATCTAC ATCATCCAGCCTCATTCATCTACCAAATACGATCGGGGTTTCTCGGCGCA AAACATTATTAAAAGTAAAGCTCGAAATGCGCTTTCACTTGTCCACCTAG AGATGCTGATGCGGTTGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig197875:249..818+

>mRNA_H-elongata_contig197875.5535.1 ID=mRNA_H-elongata_contig197875.5535.1|Name=mRNA_H-elongata_contig197875.5535.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig197875:249..818+ (Himanthalia elongata Himel1 dioecious)
TTCAAGGAGCGGTTCGCCAAGGTGGATATCTTCGAGAACTGTGCGGTGTT
CGACCCGCAGCGGTTTTCCACCGAGGAGAACGACCTCTTCGAGTACGGTG
TCGATGATATCAAGATGTTGGGAGAGCACTACGGCAAGAAGCACGGTAGT
GTGCCACAGTGCGTTGACCCTGACGAGCTGGCTCGTGAGTGGCAGTACGC
CAAGAACATCATGATCGATGTCAGACGCAGCGCAGCAATCTCCACAAGAG
TGGACGCTCTCGCAAAGGCTTCAAGGAGCGGTTCGCCAAGGTGGATATCT
TCGAGAACTGTGCGGTGTTCGACCCGCAGCGGTTTTCCACCGAGGAGAAC
GACCTCTTCGAGTACGGTGTCGATGATATCAAGATGTTGGGAGAGCACTA
CGGCAAGAAGCACGGTAGTGTGCCACAGTGCGTTGACCCTGACGAGCTGG
CTCGTGAGTGGCAGTACGCCAAGAACATCATGATCGATGTCAGACGCAGC
GCAGCAATCTCCACAAGAGTGGACGCTCTCGCAAAGGCTTTGAACGGGGA
CGGTCAATTCCCGAACCTCTACAAGCTGGTGAAGATCTACATCATCCAGC
CTCATTCATCTACCAAATACGATCGGGGTTTCTCGGCGCAAAACATTATT
AAAAGTAAAGCTCGAAATGCGCTTTCACTTGTCCACCTAGAGATGCTGAT
GCGGTTGTCCTTTGAACGGGGACGGTCAATTCCCGAACCTCTACAAGCTG
GTGAAGATCTACATCATCCAGCCTCATTCATCTACCAAATACGATCGGGG
TTTCTCGGCGCAAAACATTATTAAAAGTAAAGCTCGAAATGCGCTTTCAC
TTGTCCACCTAGAGATGCTGATGCGGTTGTCC
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