mRNA_H-elongata_contig197873.5534.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197873.5534.1
Unique NamemRNA_H-elongata_contig197873.5534.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: D7FTL2_ECTSI (WW domain, G-patch, C2H2 zinc finger n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTL2_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 2.280e-63
Identity = 111/142 (78.17%), Postives = 126/142 (88.73%), Query Frame = 1
Query:    1 DGLLAEGKASSM---SLTKFDDIDEEDKAGRKTRNFKRNETRGYLDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKRLEKAVR 417
            DG+LA+G  SS    ++T FDDIDEEDKAGRKTR FKRNET+GY+D +SL+++S+DKPIGEENRGFRLL KMGWK GQGLGAKGDGI VPVVL +QVATLGLGK+ EDDRYTDEAARERKKLD+EV ET +MKAKRLEKAVR
Sbjct:   52 DGMLAKGTESSALSRTVTNFDDIDEEDKAGRKTRLFKRNETQGYIDTQSLDAASLDKPIGEENRGFRLLTKMGWKLGQGLGAKGDGITVPVVLGTQVATLGLGKSAEDDRYTDEAARERKKLDSEVVETADMKAKRLEKAVR 193          
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A6H5JGS0_9PHAE (G-patch domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 8.030e-29
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1
Query:  205 MGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKRLEKAVR 417
            MGWK GQGLGAKGDGI VPVVL +QVATLGLGK+ EDDRYTDEAARERKKLD+EV ET +MKAKRLEKAVR
Sbjct:    1 MGWKLGQGLGAKGDGITVPVVLGTQVATLGLGKSAEDDRYTDEAARERKKLDSEVVETADMKAKRLEKAVR 71          
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A7S4DBH5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBH5_HETAK)

HSP 1 Score: 113 bits (283), Expect = 2.930e-27
Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   10 LAEGKASSMSLTKFDDIDEEDKAGRKTRNFKRNETRGYLDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVA--TLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKRL 402
            + E +A   S  +  D+D +D    K R +K NET+GYLD+ +  S+S DK I E NRGF+LL KMGWK+GQGLG  G GI  PV L    A  TLGLGK  E +   D AA++RKKLD EVEET+E   KRL
Sbjct:   81 MVETRAGLGSFKQGYDLDFDDDMDDKMRVYKVNETKGYLDLSTFESASADKEIPENNRGFKLLVKMGWKRGQGLGKGGKGITAPVQLRPNEAGDTLGLGKAGEYEEKVDTAAKQRKKLDVEVEETDEEVTKRL 213          
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A0L0HT99_SPIPD (G-patch domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HT99_SPIPD)

HSP 1 Score: 80.1 bits (196), Expect = 5.090e-16
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 1
Query:  100 KRNETRGYLDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTE 366
            +R +  GYLD+++L+ +++DK + E N G+RL+ KMGW +G+GLG +GDG   PV +I +  TLG+GK  E D Y  E+  +RK L++E
Sbjct:   78 RREQPSGYLDLDALDQTTMDKHLPESNIGYRLMLKMGWTKGKGLGREGDGRVDPVRIIVKEDTLGVGKGEELDTYHSESTSKRKMLESE 166          
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: W7T5T6_9STRA (G patch domain-containing protein 8 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T5T6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.360e-16
Identity = 57/139 (41.01%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   10 LAEGKASSMSLTKFDDIDEEDKAGRKTRNFKRNETRGYLDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLG-AKGDGIRVPVVLISQ-VATLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKRLEKAVRE 420
            + E +ASSM+L           A  +  +FKR ET GYLD  + + +++D P+ ++NRG +LL KMGWK+   LG A G+G+ VP+ L+   +   GLGK  E D   +EA R R+ LD EV+ET  +K +R  KA +E
Sbjct:   47 ILETRASSMALP----------AATERVSFKRYETAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLVVPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVEVKETVAIKEERALKAAKE 175          
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: UPI00125DD781 (G patch domain-containing protein 8 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125DD781)

HSP 1 Score: 80.9 bits (198), Expect = 1.590e-15
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1
Query:  124 LDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKR 399
            +D+E++  +S+DK +   N GFRLL+KMGWK G+GLG    GI  P+    + A LGLGK  EDD +T E   +RK+LD EVEETEE+  KR
Sbjct:   48 VDLENVEQASLDKQLTSSNVGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDAKLGLGKQEEDDYFTSEENIQRKRLDIEVEETEELAKKR 138          
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A0A9PR29_ARUDO (G-patch domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9PR29_ARUDO)

HSP 1 Score: 78.2 bits (191), Expect = 1.590e-15
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  124 LDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEE 384
            LD E L  +SV   +   N GFRLL+KMGWK G+GLG    GI  P+    + A LG+GK  EDD +T E   +RKKL+ E+EETEE
Sbjct:   40 LDTEGLEQASVHTQLSASNVGFRLLQKMGWKSGKGLGKNEQGILEPIRADIRDAKLGVGKQEEDDFFTSEENVQRKKLNIELEETEE 126          
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A507EJX6_9FUNG (G-patch domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507EJX6_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 3.300e-15
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 1
Query:  118 GYLDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTE--VEETEEMKAKR 399
            GYLD+++L+ +++DK + E N G+RL+ KMGW +G+GLG +GDG   PV +I +  TLG+GK  E D Y  E+  +RK L++E   EET+E K  R
Sbjct:   61 GYLDLDALDQTTMDKHLPESNVGYRLMLKMGWTKGKGLGREGDGRVDPVRIIVKKDTLGVGKGEELDTYHSESTSKRKMLESEKIAEETQEEKTAR 156          
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: UPI001FB108A5 (G patch domain-containing protein 8 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB108A5)

HSP 1 Score: 78.2 bits (191), Expect = 1.750e-14
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  124 LDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKR 399
            +D++++  +S+D  +   N GFRLL+KMGWK G+GLG    GI  P+    + A LG+GK  EDD YT E   +RKKLD E+EETEE+  KR
Sbjct:   58 VDLDNVEQASLDTQLSSSNIGFRLLQKMGWK-GKGLGKDEQGITEPIRSGMRDAKLGVGKQEEDDFYTAEENIQRKKLDVELEETEEIAKKR 148          
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A3B6AQA0_WHEAT (G-patch domain-containing protein n=12 Tax=Triticeae TaxID=147389 RepID=A0A3B6AQA0_WHEAT)

HSP 1 Score: 78.2 bits (191), Expect = 1.770e-14
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  124 LDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEE 384
            LD E L  +SVD  +   N GFRLL+KMGWK G+GLG    GI  P+    + A LG+GK  +DD +T E   +RK+L+ E+EETEE
Sbjct:   56 LDTEGLEQASVDTQLASSNVGFRLLQKMGWKSGKGLGKNEQGILEPIKAGIRDAKLGVGKQEQDDFFTAEDNVQRKRLNVELEETEE 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTL2_ECTSI2.280e-6378.17WW domain, G-patch, C2H2 zinc finger n=1 Tax=Ectoc... [more]
A0A6H5JGS0_9PHAE8.030e-2985.92G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S4DBH5_HETAK2.930e-2751.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0L0HT99_SPIPD5.090e-1644.94G-patch domain-containing protein n=1 Tax=Spizello... [more]
W7T5T6_9STRA6.360e-1641.01G patch domain-containing protein 8 n=3 Tax=Monodo... [more]
UPI00125DD7811.590e-1551.09G patch domain-containing protein 8 n=2 Tax=Ipomoe... [more]
A0A0A9PR29_ARUDO1.590e-1550.57G-patch domain-containing protein n=2 Tax=Arundo d... [more]
A0A507EJX6_9FUNG3.300e-1546.88G-patch domain-containing protein n=1 Tax=Spizello... [more]
UPI001FB108A51.750e-1448.91G patch domain-containing protein 8 n=1 Tax=Impati... [more]
A0A3B6AQA0_WHEAT1.770e-1449.43G-patch domain-containing protein n=12 Tax=Tritice... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197873contigH-elongata_contig197873:1..932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue2.2e-51
Seed eggNOG ortholog2880.D7FTL2
KEGG koko:K13103
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000390,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0032984,GO:0032988,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071008,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.spliceosomal complex disassembly
EggNOG OGsKOG2184@1,KOG2184@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain, G-patch, C2H2 zinc finger
Ec32 orthologEc-06_008660.1
Exons3
Model size420
Cds size420
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197873.5534.1prot_H-elongata_contig197873.5534.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197873 1..932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930118.1337137-CDS-H-elongata_contig197873:0..1001622930118.1337137-CDS-H-elongata_contig197873:0..100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197873 1..100 -
1691679287.6089666-CDS-H-elongata_contig197873:0..1001691679287.6089666-CDS-H-elongata_contig197873:0..100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197873 1..100 -
1622930118.1503775-CDS-H-elongata_contig197873:330..4881622930118.1503775-CDS-H-elongata_contig197873:330..488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197873 331..488 -
1691679287.6201158-CDS-H-elongata_contig197873:330..4881691679287.6201158-CDS-H-elongata_contig197873:330..488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197873 331..488 -
1622930118.1641622-CDS-H-elongata_contig197873:770..9321622930118.1641622-CDS-H-elongata_contig197873:770..932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197873 771..932 -
1691679287.62986-CDS-H-elongata_contig197873:770..9321691679287.62986-CDS-H-elongata_contig197873:770..932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197873 771..932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197873.5534.1

>prot_H-elongata_contig197873.5534.1 ID=prot_H-elongata_contig197873.5534.1|Name=mRNA_H-elongata_contig197873.5534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
DGLLAEGKASSMSLTKFDDIDEEDKAGRKTRNFKRNETRGYLDIESLNSS
SVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLG
KTTEDDRYTDEAARERKKLDTEVEETEEMKAKRLEKAVRE
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mRNA from alignment at H-elongata_contig197873:1..932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197873.5534.1 ID=mRNA_H-elongata_contig197873.5534.1|Name=mRNA_H-elongata_contig197873.5534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=932bp|location=Sequence derived from alignment at H-elongata_contig197873:1..932- (Himanthalia elongata Himel1 dioecious)
GATGGTCTTCTCGCCGAAGGAAAGGCGTCCTCCATGTCCCTGACGAAGTT CGACGACATCGACGAAGAGGACAAGGCCGGCCGCAAGACGCGAAACTTCA AGAGGAACGAGACCCGGGGTTATCTCGACATCGAGTCGTTGAACTCTTCC AGTGTGGATAAGGTGCGCAGTACGGTGCAGTGTGGTAAAGGCTCGGGTCA TACCTGTTCGCGTTTGGTGGTTGAAACCCCGCGATTGGAAGGAATTCCAG CATCTCCGTTTTTTTGGGTTTTTTTTTGCCTCCCACCGCTGCGTGACAAA TTTCCTCCCGTATGTTATGTGTCATCCAGATCTCAGAGGACCAAGGTTAC TAAATCAAAATATTATCTGTGTGTCGATGTGGGTGCGTGTTTTTGTGGTT ATGAATGTGTGTATTTTATTGTCGTGGATCCTCGCGTTGCACAGCCGATC GGGGAGGAAAACCGTGGCTTCCGACTGCTGAAGAAGATGGGCTGGAAGCA GGGGCAAGGGCTCGGGGCCAAGGGCGACGGCATCAGGGTCCCCGTCGTGC TGATATCGCAGGTGGCGACGCTTGGTCTGGGGAAGACGACGGAAGACGAC AGGTTGGCGTGTGGGCGACGGGGAGAGGAGCCGCCCACCCAGCGATGCTT CTGTAGGCTTTACGTTTGAAGCCCACGGTAGAGCGGTTAAATATTTGGCT CGAATAGCGTCAAGGCGTGCTTCCGGCGGCGGACCCGGGGCCAATCCCAC CGCAACGGGAAAACCCCCCCGGTAAACACATGTTTTCAATGTGGAGTGGA GTTTAGTTGATGGCGTACTTCAAATGAAACAGGTATACAGACGAGGCGGC GAGAGAGAGGAAGAAGCTCGACACCGAAGTGGAGGAGACTGAGGAGATGA AGGCCAAGAGGCTCGAGAAGGCTGTGCGCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig197873:1..932-

>mRNA_H-elongata_contig197873.5534.1 ID=mRNA_H-elongata_contig197873.5534.1|Name=mRNA_H-elongata_contig197873.5534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig197873:1..932- (Himanthalia elongata Himel1 dioecious)
GATGGTCTTCTCGCCGAAGGAAAGGCGTCCTCCATGTCCCTGACGAAGTT
CGACGACATCGACGAAGAGGACAAGGCCGGCCGCAAGACGCGAAACTTCA
AGAGGAACGAGACCCGGGGTTATCTCGACATCGAGTCGTTGAACTCTTCC
AGTGTGGATAAGGATGGTCTTCTCGCCGAAGGAAAGGCGTCCTCCATGTC
CCTGACGAAGTTCGACGACATCGACGAAGAGGACAAGGCCGGCCGCAAGA
CGCGAAACTTCAAGAGGAACGAGACCCGGGGTTATCTCGACATCGAGTCG
TTGAACTCTTCCAGTGTGGATAAGCCGATCGGGGAGGAAAACCGTGGCTT
CCGACTGCTGAAGAAGATGGGCTGGAAGCAGGGGCAAGGGCTCGGGGCCA
AGGGCGACGGCATCAGGGTCCCCGTCGTGCTGATATCGCAGGTGGCGACG
CTTGGTCTGGGGAAGACGACGGAAGACGACAGCCGATCGGGGAGGAAAAC
CGTGGCTTCCGACTGCTGAAGAAGATGGGCTGGAAGCAGGGGCAAGGGCT
CGGGGCCAAGGGCGACGGCATCAGGGTCCCCGTCGTGCTGATATCGCAGG
TGGCGACGCTTGGTCTGGGGAAGACGACGGAAGACGACAGGTATACAGAC
GAGGCGGCGAGAGAGAGGAAGAAGCTCGACACCGAAGTGGAGGAGACTGA
GGAGATGAAGGCCAAGAGGCTCGAGAAGGCTGTGCGCGAGGTATACAGAC
GAGGCGGCGAGAGAGAGGAAGAAGCTCGACACCGAAGTGGAGGAGACTGA
GGAGATGAAGGCCAAGAGGCTCGAGAAGGCTGTGCGCGAG
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