prot_H-elongata_contig19786.5533.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19786.5533.1
Unique Nameprot_H-elongata_contig19786.5533.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length534
Homology
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BLAST of mRNA_H-elongata_contig19786.5533.1 vs. uniprot
Match: A0A6H5JIW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW0_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.530e-35
Identity = 243/368 (66.03%), Postives = 271/368 (73.64%), Query Frame = 0 
Query:  166 TGKGGRGKLMLFPESDSHRFVLHVKDLTKQGNLAGVLAALTIAERRPEGVDVRGYRACIDGMAKVRRWGDALELLSRMRAAGVAPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVSRGVQKSSRSPVIFSSVTVTCGAAGRWEEALETLRLTTQQGMAPTRIAYNATLGALGKAGEWRQAQRLLDEMGRSSERSRPSTAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRPSAVTLNALVSACRPGGQWRRALSIVEEMR 533
            TGKGG+GKL +FP+SDS+RFVLH++ LT+  NL+GVL+AL+IAER+  GVDV GY ACI GMAK +RW DAL LLSRMRAAGVAP++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +SSRSP IF+SVT  CGAAGRWEEAL  LRLT + GMAPT IAYNA             A+RLL +M      S PST  +                                 P   +  +++ AC   G+  RAL ++E+MR
Sbjct:  175 TGKGGKGKL-IFPQSDSYRFVLHIRQLTQDRNLSGVLSALSIAERKEGGVDVHGYNACIGGMAKAKRWADALSLLSRMRAAGVAPNTHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSRSPAIFNSVTAACGAAGRWEEALVALRLTVRGGMAPTFIAYNAXXXXXXXXXXXXHARRLLKDM--QQRASSPSTRGEDSSDSNPGLRERRARGMARTSPRKERLPP----PDVYSYTSVIDACAKSGERDRALKVLEDMR 535
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BLAST of mRNA_H-elongata_contig19786.5533.1 vs. uniprot
Match: D7FSD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD8_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 6.970e-19
Identity = 63/145 (43.45%), Postives = 78/145 (53.79%), Query Frame = 0 
Query:  390 KSSRSPVIFSSVTVTCGAAGRWEEALETLRLTTQQGMAPTRIAYNATLGALGKAGEWRQAQRLLDEMGRSSERSRPSTAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRPSAV-TLNALVSACRPGGQWRRALSIVEEMR 533
            +SSRSP IF+SVT  CGAAGRWEEAL  LRLT + GMAPT IAYNATLGAL     W+ A+RLL +M      S PST                                 R+RP  V +  +++ AC   G+  RAL ++E+MR
Sbjct:  164 RSSRSPAIFNSVTAACGAAGRWEEALVALRLTARGGMAPTFIAYNATLGALXXXXXWKHARRLLKDM--QQRASSPSTG-----GGDSSDSNPGLRERRARGLARTSPREERLRPPDVYSYTSVIDACAKSGERDRALKVLEDMR 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19786.5533.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIW0_9PHAE2.530e-3566.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSD8_ECTSI6.970e-1943.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 469..516
e-value: 9.1E-10
score: 38.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 324..354
e-value: 4.8E-6
score: 24.4
coord: 472..505
e-value: 2.7E-7
score: 28.3
coord: 220..252
e-value: 1.1E-5
score: 23.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 220..248
e-value: 0.02
score: 15.1
coord: 255..283
e-value: 0.38
score: 11.1
coord: 432..458
e-value: 0.0092
score: 16.2
coord: 362..388
e-value: 0.2
score: 12.0
coord: 324..352
e-value: 1.0E-4
score: 22.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 356..390
score: 8.473
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 251..285
score: 8.977
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 470..504
score: 11.915
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 394..428
score: 8.594
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 429..463
score: 9.065
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 216..250
score: 10.38
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 505..534
score: 8.89
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 286..320
score: 7.322
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 321..355
score: 11.334
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 293..464
e-value: 1.2E-35
score: 125.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 465..534
e-value: 4.7E-17
score: 63.9
coord: 178..292
e-value: 7.9E-16
score: 59.9
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 357..533
coord: 280..456
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 357..533
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 215..349
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 215..349
coord: 280..456

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19786contigH-elongata_contig19786:2143..4120 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19786.5533.1mRNA_H-elongata_contig19786.5533.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19786 2143..4120 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19786.5533.1 ID=prot_H-elongata_contig19786.5533.1|Name=mRNA_H-elongata_contig19786.5533.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=534bp
MLALRIRGGRHCGNVLPLCTISTKGMVPSNMIGIRAVSATTASSLSGPCL
CSVQPTRPAATPRRLTSSLSNGGSPISDGNSASLRVEENKGVLTRSLVSP
WGQVGEHAPLATTTSRDSVFTRRHRRQDQQQENPPTQRYTLELQQQQQRL
EERAQLTGLPPPPPSTGKGGRGKLMLFPESDSHRFVLHVKDLTKQGNLAG
VLAALTIAERRPEGVDVRGYRACIDGMAKVRRWGDALELLSRMRAAGVAP
DSRCYASAIEACCRSRQHRHASVLRREMASLGVQATPSCFRLELEHVGNS
GRWRSALNLLSELKTVGLTPDAKMYNSVLDAFARSSEWQRAAEVMREMER
EGHELHARSYRGVVVAASNAGDWRAAWGFFKRMVSRGVQKSSRSPVIFSS
VTVTCGAAGRWEEALETLRLTTQQGMAPTRIAYNATLGALGKAGEWRQAQ
RLLDEMGRSSERSRPSTAPDVYSYTSVIDAFAKAGELEHALRVRGDMRRA
RVRPSAVTLNALVSACRPGGQWRRALSIVEEMRD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf