mRNA_H-elongata_contig19786.5533.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19786.5533.1
Unique NamemRNA_H-elongata_contig19786.5533.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19786.5533.1 vs. uniprot
Match: A0A6H5JIW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW0_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.530e-35
Identity = 243/368 (66.03%), Postives = 271/368 (73.64%), Query Frame = 1 
Query:  496 TGKGGRGKLMLFPESDSHRFVLHVKDLTKQGNLAGVLAALTIAERRPEGVDVRGYRACIDGMAKVRRWGDALELLSRMRAAGVAPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVSRGVQKSSRSPVIFSSVTVTCGAAGRWEEALETLRLTTQQGMAPTRIAYNATLGALGKAGEWRQAQRLLDEMGRSSERSRPSTAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRPSAVTLNALVSACRPGGQWRRALSIVEEMR 1599
            TGKGG+GKL +FP+SDS+RFVLH++ LT+  NL+GVL+AL+IAER+  GVDV GY ACI GMAK +RW DAL LLSRMRAAGVAP++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +SSRSP IF+SVT  CGAAGRWEEAL  LRLT + GMAPT IAYNA             A+RLL +M      S PST  +                                 P   +  +++ AC   G+  RAL ++E+MR
Sbjct:  175 TGKGGKGKL-IFPQSDSYRFVLHIRQLTQDRNLSGVLSALSIAERKEGGVDVHGYNACIGGMAKAKRWADALSLLSRMRAAGVAPNTHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSRSPAIFNSVTAACGAAGRWEEALVALRLTVRGGMAPTFIAYNAXXXXXXXXXXXXHARRLLKDM--QQRASSPSTRGEDSSDSNPGLRERRARGMARTSPRKERLPP----PDVYSYTSVIDACAKSGERDRALKVLEDMR 535
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BLAST of mRNA_H-elongata_contig19786.5533.1 vs. uniprot
Match: D7FSD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD8_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 6.970e-19
Identity = 63/145 (43.45%), Postives = 78/145 (53.79%), Query Frame = 1 
Query: 1168 KSSRSPVIFSSVTVTCGAAGRWEEALETLRLTTQQGMAPTRIAYNATLGALGKAGEWRQAQRLLDEMGRSSERSRPSTAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRPSAV-TLNALVSACRPGGQWRRALSIVEEMR 1599
            +SSRSP IF+SVT  CGAAGRWEEAL  LRLT + GMAPT IAYNATLGAL     W+ A+RLL +M      S PST                                 R+RP  V +  +++ AC   G+  RAL ++E+MR
Sbjct:  164 RSSRSPAIFNSVTAACGAAGRWEEALVALRLTARGGMAPTFIAYNATLGALXXXXXWKHARRLLKDM--QQRASSPSTG-----GGDSSDSNPGLRERRARGLARTSPREERLRPPDVYSYTSVIDACAKSGERDRALKVLEDMR 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19786.5533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIW0_9PHAE2.530e-3566.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSD8_ECTSI6.970e-1943.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19786contigH-elongata_contig19786:2143..4120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue6.5e-19
Seed eggNOG ortholog2880.D7FSD8
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-25_001000.1
Exons2
Model size1602
Cds size1602
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930118.0830266-CDS-H-elongata_contig19786:2142..24951622930118.0830266-CDS-H-elongata_contig19786:2142..2495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19786 2143..2495 +
1691679287.5785174-CDS-H-elongata_contig19786:2142..24951691679287.5785174-CDS-H-elongata_contig19786:2142..2495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19786 2143..2495 +
1622930118.0968812-CDS-H-elongata_contig19786:2871..41201622930118.0968812-CDS-H-elongata_contig19786:2871..4120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19786 2872..4120 +
1691679287.5909474-CDS-H-elongata_contig19786:2871..41201691679287.5909474-CDS-H-elongata_contig19786:2871..4120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19786 2872..4120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19786.5533.1prot_H-elongata_contig19786.5533.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19786 2143..4120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19786.5533.1

>prot_H-elongata_contig19786.5533.1 ID=prot_H-elongata_contig19786.5533.1|Name=mRNA_H-elongata_contig19786.5533.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=534bp
MLALRIRGGRHCGNVLPLCTISTKGMVPSNMIGIRAVSATTASSLSGPCL
CSVQPTRPAATPRRLTSSLSNGGSPISDGNSASLRVEENKGVLTRSLVSP
WGQVGEHAPLATTTSRDSVFTRRHRRQDQQQENPPTQRYTLELQQQQQRL
EERAQLTGLPPPPPSTGKGGRGKLMLFPESDSHRFVLHVKDLTKQGNLAG
VLAALTIAERRPEGVDVRGYRACIDGMAKVRRWGDALELLSRMRAAGVAP
DSRCYASAIEACCRSRQHRHASVLRREMASLGVQATPSCFRLELEHVGNS
GRWRSALNLLSELKTVGLTPDAKMYNSVLDAFARSSEWQRAAEVMREMER
EGHELHARSYRGVVVAASNAGDWRAAWGFFKRMVSRGVQKSSRSPVIFSS
VTVTCGAAGRWEEALETLRLTTQQGMAPTRIAYNATLGALGKAGEWRQAQ
RLLDEMGRSSERSRPSTAPDVYSYTSVIDAFAKAGELEHALRVRGDMRRA
RVRPSAVTLNALVSACRPGGQWRRALSIVEEMRD
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mRNA from alignment at H-elongata_contig19786:2143..4120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19786.5533.1 ID=mRNA_H-elongata_contig19786.5533.1|Name=mRNA_H-elongata_contig19786.5533.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1978bp|location=Sequence derived from alignment at H-elongata_contig19786:2143..4120+ (Himanthalia elongata Himel1 dioecious)
ATGCTAGCGCTTCGCATAAGAGGTGGCCGCCACTGCGGTAATGTTCTTCC
TCTATGTACAATCTCAACTAAAGGAATGGTCCCAAGTAATATGATTGGAA
TCAGGGCGGTGTCGGCGACGACAGCTTCAAGCCTGAGCGGGCCATGTCTC
TGTTCTGTCCAACCGACTCGACCTGCGGCGACTCCTCGTCGATTGACCAG
CTCTCTATCCAACGGCGGCAGCCCCATCTCCGATGGAAATTCCGCTTCTC
TTCGTGTGGAAGAAAATAAAGGTGTCCTCACGCGCTCTTTGGTATCTCCG
TGGGGTCAGGTCGGTGAACATGCGCCACTAGCAACGACCACGTCGCGGGA
CAGGTCAGTCTCTCACGGAGTCAAATCTTCAATATACTGTTCTTAATTGA
TTTCCCAGGAAGTGCCACTGGTAGGACTATAACAGCAGCTCTACTGAGTC
ACAAGTTCTACTCGTAGAGTAAGACATGTGTACAACCACGCCGCTTCATA
TTATCAATTCACCCCCTGATAAATCCCGTCCGACTCCCACCACCTCCTAT
GGGCGTCCCTGAACAGTCCGTGGCTTGTTTCACTTGCTGCCCCACGCCTG
CTCTCTTCCCCCTCCCATACAACCTTCAACTACTGTATCCTTGTCCTTTC
CCTACCCCTCTTCCCACGACACGCTCTCTTGCGCTCCCGACAAAACCCAT
GTGGGCTCTTGATTCTCCCAACACGTTAGCGTGTTCACCAGAAGGCACCG
ACGGCAAGATCAGCAGCAGGAAAACCCACCAACACAGAGGTACACGCTCG
AGCTACAACAGCAACAGCAGCGGCTGGAGGAGAGGGCGCAACTGACAGGC
CTCCCGCCCCCGCCGCCTTCCACGGGCAAGGGGGGGCGAGGCAAGCTCAT
GCTGTTCCCAGAGTCGGACTCGCATCGGTTCGTCCTCCACGTAAAGGATC
TTACCAAGCAAGGGAACCTGGCAGGGGTGCTGGCCGCGCTGACCATCGCC
GAGAGGAGGCCAGAGGGCGTGGACGTCCGCGGATACCGCGCCTGCATCGA
TGGGATGGCGAAGGTCAGGCGCTGGGGGGACGCCCTCGAGCTGCTCAGCA
GGATGCGGGCGGCGGGGGTCGCACCAGACTCTCGCTGCTACGCGAGTGCG
ATCGAGGCTTGCTGCCGGTCTAGGCAGCACCGCCACGCGTCGGTCCTCCG
GAGAGAAATGGCGAGCCTCGGGGTGCAGGCGACCCCGAGCTGCTTCCGCC
TCGAGCTCGAGCACGTCGGCAACTCGGGAAGGTGGCGCTCAGCGCTCAAC
CTCCTGTCCGAGCTCAAGACGGTGGGTCTGACCCCAGACGCGAAGATGTA
CAACTCCGTCCTGGACGCCTTCGCGAGGTCGTCGGAATGGCAAAGGGCCG
CCGAGGTGATGAGGGAGATGGAGCGGGAGGGGCACGAGCTCCATGCGAGG
AGCTACCGTGGCGTCGTCGTAGCCGCGTCGAACGCGGGGGATTGGCGGGC
GGCGTGGGGGTTCTTCAAGAGGATGGTGTCTCGTGGGGTGCAGAAAAGCT
CCCGAAGCCCGGTCATATTTAGCTCCGTGACCGTCACCTGCGGTGCCGCG
GGGAGGTGGGAGGAAGCCCTCGAGACCTTGCGGCTGACGACGCAGCAGGG
GATGGCCCCGACTCGCATCGCGTACAACGCCACGCTCGGGGCTCTGGGGA
AAGCGGGAGAGTGGCGCCAAGCGCAGCGGCTGTTGGACGAGATGGGCCGA
TCATCCGAACGCTCGCGGCCGTCCACGGCGCCCGACGTGTACAGCTACAC
CTCGGTGATCGATGCGTTCGCGAAGGCGGGGGAGCTCGAGCACGCCCTGC
GAGTCAGGGGGGACATGCGCCGCGCGCGAGTGCGCCCTAGCGCTGTGACG
CTCAACGCGCTCGTCTCCGCGTGCCGGCCGGGTGGACAATGGCGCCGCGC
GCTGTCGATCGTAGAGGAGATGCGCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig19786:2143..4120+

>mRNA_H-elongata_contig19786.5533.1 ID=mRNA_H-elongata_contig19786.5533.1|Name=mRNA_H-elongata_contig19786.5533.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3204bp|location=Sequence derived from alignment at H-elongata_contig19786:2143..4120+ (Himanthalia elongata Himel1 dioecious)
ATGCTAGCGCTTCGCATAAGAGGTGGCCGCCACTGCGGTAATGTTCTTCC
TCTATGTACAATCTCAACTAAAGGAATGGTCCCAAGTAATATGATTGGAA
TCAGGGCGGTGTCGGCGACGACAGCTTCAAGCCTGAGCGGGCCATGTCTC
TGTTCTGTCCAACCGACTCGACCTGCGGCGACTCCTCGTCGATTGACCAG
CTCTCTATCCAACGGCGGCAGCCCCATCTCCGATGGAAATTCCGCTTCTC
TTCGTGTGGAAGAAAATAAAGGTGTCCTCACGCGCTCTTTGGTATCTCCG
TGGGGTCAGGTCGGTGAACATGCGCCACTAGCAACGACCACGTCGCGGGA
CAGATGCTAGCGCTTCGCATAAGAGGTGGCCGCCACTGCGGTAATGTTCT
TCCTCTATGTACAATCTCAACTAAAGGAATGGTCCCAAGTAATATGATTG
GAATCAGGGCGGTGTCGGCGACGACAGCTTCAAGCCTGAGCGGGCCATGT
CTCTGTTCTGTCCAACCGACTCGACCTGCGGCGACTCCTCGTCGATTGAC
CAGCTCTCTATCCAACGGCGGCAGCCCCATCTCCGATGGAAATTCCGCTT
CTCTTCGTGTGGAAGAAAATAAAGGTGTCCTCACGCGCTCTTTGGTATCT
CCGTGGGGTCAGGTCGGTGAACATGCGCCACTAGCAACGACCACGTCGCG
GGACAGCGTGTTCACCAGAAGGCACCGACGGCAAGATCAGCAGCAGGAAA
ACCCACCAACACAGAGGTACACGCTCGAGCTACAACAGCAACAGCAGCGG
CTGGAGGAGAGGGCGCAACTGACAGGCCTCCCGCCCCCGCCGCCTTCCAC
GGGCAAGGGGGGGCGAGGCAAGCTCATGCTGTTCCCAGAGTCGGACTCGC
ATCGGTTCGTCCTCCACGTAAAGGATCTTACCAAGCAAGGGAACCTGGCA
GGGGTGCTGGCCGCGCTGACCATCGCCGAGAGGAGGCCAGAGGGCGTGGA
CGTCCGCGGATACCGCGCCTGCATCGATGGGATGGCGAAGGTCAGGCGCT
GGGGGGACGCCCTCGAGCTGCTCAGCAGGATGCGGGCGGCGGGGGTCGCA
CCAGACTCTCGCTGCTACGCGAGTGCGATCGAGGCTTGCTGCCGGTCTAG
GCAGCACCGCCACGCGTCGGTCCTCCGGAGAGAAATGGCGAGCCTCGGGG
TGCAGGCGACCCCGAGCTGCTTCCGCCTCGAGCTCGAGCACGTCGGCAAC
TCGGGAAGGTGGCGCTCAGCGCTCAACCTCCTGTCCGAGCTCAAGACGGT
GGGTCTGACCCCAGACGCGAAGATGTACAACTCCGTCCTGGACGCCTTCG
CGAGGTCGTCGGAATGGCAAAGGGCCGCCGAGGTGATGAGGGAGATGGAG
CGGGAGGGGCACGAGCTCCATGCGAGGAGCTACCGTGGCGTCGTCGTAGC
CGCGTCGAACGCGGGGGATTGGCGGGCGGCGTGGGGGTTCTTCAAGAGGA
TGGTGTCTCGTGGGGTGCAGAAAAGCTCCCGAAGCCCGGTCATATTTAGC
TCCGTGACCGTCACCTGCGGTGCCGCGGGGAGGTGGGAGGAAGCCCTCGA
GACCTTGCGGCTGACGACGCAGCAGGGGATGGCCCCGACTCGCATCGCGT
ACAACGCCACGCTCGGGGCTCTGGGGAAAGCGGGAGAGTGGCGCCAAGCG
CAGCGGCTGTTGGACGAGATGGGCCGATCATCCGAACGCTCGCGGCCGTC
CACGGCGCCCGACGTGTACAGCTACACCTCGGTGATCGATGCGTTCGCGA
AGGCGGGGGAGCTCGAGCACGCCCTGCGAGTCAGGGGGGACATGCGCCGC
GCGCGAGTGCGCCCTAGCGCTGTGACGCTCAACGCGCTCGTCTCCGCGTG
CCGGCCGGGTGGACAATGGCGCCGCGCGCTGTCGATCGTAGAGGAGATGC
GCGATCGTGTTCACCAGAAGGCACCGACGGCAAGATCAGCAGCAGGAAAA
CCCACCAACACAGAGGTACACGCTCGAGCTACAACAGCAACAGCAGCGGC
TGGAGGAGAGGGCGCAACTGACAGGCCTCCCGCCCCCGCCGCCTTCCACG
GGCAAGGGGGGGCGAGGCAAGCTCATGCTGTTCCCAGAGTCGGACTCGCA
TCGGTTCGTCCTCCACGTAAAGGATCTTACCAAGCAAGGGAACCTGGCAG
GGGTGCTGGCCGCGCTGACCATCGCCGAGAGGAGGCCAGAGGGCGTGGAC
GTCCGCGGATACCGCGCCTGCATCGATGGGATGGCGAAGGTCAGGCGCTG
GGGGGACGCCCTCGAGCTGCTCAGCAGGATGCGGGCGGCGGGGGTCGCAC
CAGACTCTCGCTGCTACGCGAGTGCGATCGAGGCTTGCTGCCGGTCTAGG
CAGCACCGCCACGCGTCGGTCCTCCGGAGAGAAATGGCGAGCCTCGGGGT
GCAGGCGACCCCGAGCTGCTTCCGCCTCGAGCTCGAGCACGTCGGCAACT
CGGGAAGGTGGCGCTCAGCGCTCAACCTCCTGTCCGAGCTCAAGACGGTG
GGTCTGACCCCAGACGCGAAGATGTACAACTCCGTCCTGGACGCCTTCGC
GAGGTCGTCGGAATGGCAAAGGGCCGCCGAGGTGATGAGGGAGATGGAGC
GGGAGGGGCACGAGCTCCATGCGAGGAGCTACCGTGGCGTCGTCGTAGCC
GCGTCGAACGCGGGGGATTGGCGGGCGGCGTGGGGGTTCTTCAAGAGGAT
GGTGTCTCGTGGGGTGCAGAAAAGCTCCCGAAGCCCGGTCATATTTAGCT
CCGTGACCGTCACCTGCGGTGCCGCGGGGAGGTGGGAGGAAGCCCTCGAG
ACCTTGCGGCTGACGACGCAGCAGGGGATGGCCCCGACTCGCATCGCGTA
CAACGCCACGCTCGGGGCTCTGGGGAAAGCGGGAGAGTGGCGCCAAGCGC
AGCGGCTGTTGGACGAGATGGGCCGATCATCCGAACGCTCGCGGCCGTCC
ACGGCGCCCGACGTGTACAGCTACACCTCGGTGATCGATGCGTTCGCGAA
GGCGGGGGAGCTCGAGCACGCCCTGCGAGTCAGGGGGGACATGCGCCGCG
CGCGAGTGCGCCCTAGCGCTGTGACGCTCAACGCGCTCGTCTCCGCGTGC
CGGCCGGGTGGACAATGGCGCCGCGCGCTGTCGATCGTAGAGGAGATGCG
CGAT
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