mRNA_H-elongata_contig197728.5526.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197728.5526.1
Unique NamemRNA_H-elongata_contig197728.5526.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197728.5526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197728contigH-elongata_contig197728:563..673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_001350.1
Exons1
Model size111
Cds size108
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.643346-CDS-H-elongata_contig197728:562..6701622930117.643346-CDS-H-elongata_contig197728:562..670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197728 563..670 -
1691679287.4280567-CDS-H-elongata_contig197728:562..6701691679287.4280567-CDS-H-elongata_contig197728:562..670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197728 563..670 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.6581426-UTR-H-elongata_contig197728:670..6731622930117.6581426-UTR-H-elongata_contig197728:670..673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197728 671..673 -
1691679287.4377537-UTR-H-elongata_contig197728:670..6731691679287.4377537-UTR-H-elongata_contig197728:670..673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197728 671..673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197728.5526.1prot_H-elongata_contig197728.5526.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197728 563..670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197728.5526.1

>prot_H-elongata_contig197728.5526.1 ID=prot_H-elongata_contig197728.5526.1|Name=mRNA_H-elongata_contig197728.5526.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MFQVNQQTKSGKWKCRMVSHHLLVVVVVGHQSHYI*
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mRNA from alignment at H-elongata_contig197728:563..673-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197728.5526.1 ID=mRNA_H-elongata_contig197728.5526.1|Name=mRNA_H-elongata_contig197728.5526.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig197728:563..673- (Himanthalia elongata Himel1 dioecious)
CAGATGTTTCAGGTGAATCAGCAGACCAAGTCGGGCAAGTGGAAGTGCCG
GATGGTGAGCCATCATCTCTTAGTTGTTGTTGTTGTTGGTCATCAATCAC
ATTACATTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig197728:563..673-

>mRNA_H-elongata_contig197728.5526.1 ID=mRNA_H-elongata_contig197728.5526.1|Name=mRNA_H-elongata_contig197728.5526.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig197728:563..673- (Himanthalia elongata Himel1 dioecious)
ATGTTTCAGGTGAATCAGCAGACCAAGTCGGGCAAGTGGAAGTGCCGGAT
GGTGAGCCATCATCTCTTAGTTGTTGTTGTTGTTGGTCATCAATCACATT
ACATTTAGATGTTTCAGGTGAATCAGCAGACCAAGTCGGGCAAGTGGAAG
TGCCGGATGGTGAGCCATCATCTCTTAGTTGTTGTTGTTGTTGGTCATCA
ATCACATTACATTTAG
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