mRNA_H-elongata_contig197043.5496.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197043.5496.1
Unique NamemRNA_H-elongata_contig197043.5496.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Match: D8LIP8_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP8_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 9.470e-11
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   22 SGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR 126
            +GRS+CV+WNGVHHKTN +GGS+ FGYPD  YF R
Sbjct:  372 TGRSNCVIWNGVHHKTNTTGGSSSFGYPDPGYFGR 406
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BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Match: A0A2A9MLR5_9APIC (RING-type E3 ubiquitin transferase n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MLR5_9APIC)

HSP 1 Score: 61.2 bits (147), Expect = 8.520e-10
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   22 SGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR 126
            +GRSD VVWNG+HHKTN SGG  ++GYPD  YF R
Sbjct:  440 TGRSDVVVWNGIHHKTNRSGGPTVYGYPDDSYFDR 474
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BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Match: B9PZT1_TOXGV (RING-type E3 ubiquitin transferase n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=B9PZT1_TOXGV)

HSP 1 Score: 58.9 bits (141), Expect = 5.560e-9
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   22 SGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR 126
            +GRSD VVWNG+HHKTN SGG   +GYPD  YF R
Sbjct:  424 TGRSDVVVWNGIHHKTNRSGGPTGYGYPDASYFDR 458
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BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Match: A0A7S1CPA8_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPA8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.590e-9
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   22 SGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR 126
            +GRSDCV+WNGVHHKT+ +GG   FGYPD  Y  R
Sbjct:  358 TGRSDCVIWNGVHHKTSKTGGPQSFGYPDPAYLAR 392
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BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Match: A0A3P7JJE5_STRVU (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7JJE5_STRVU)

HSP 1 Score: 53.9 bits (128), Expect = 1.490e-8
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:   22 SGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR 126
            +G  + VVWN +HHKTN+SGG   FGYPD DY  R
Sbjct:    7 TGARNTVVWNNIHHKTNISGGPQKFGYPDPDYLNR 41
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BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Match: A0A7R9WB62_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB62_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.560e-8
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   22 SGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR 126
            +G+ DCVVWNG+HHKT+VSGG   +GYPD  Y  R
Sbjct:   70 TGKDDCVVWNGIHHKTSVSGGP--YGYPDETYLAR 102
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BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Match: A0A0V0QH40_PSEPJ (RING-type E3 ubiquitin transferase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QH40_PSEPJ)

HSP 1 Score: 57.4 bits (137), Expect = 1.940e-8
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   22 SGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR 126
            +G+ +  VWNGVHHKTN SGG A FGYPD  YF R
Sbjct:  300 TGQDNTTVWNGVHHKTNTSGGPAYFGYPDPTYFNR 334
[Close]
BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Match: F0Y4T2_AURAN (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4T2_AURAN)

HSP 1 Score: 54.7 bits (130), Expect = 4.120e-8
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   22 SGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR 126
            +GRSDCVVW G+HHKT  +GG+A  GYPD  Y  R
Sbjct:  101 TGRSDCVVWAGIHHKTQRTGGAAEHGYPDATYLDR 135
[Close]
BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Match: A0A078BBQ5_STYLE (RING-type E3 ubiquitin transferase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078BBQ5_STYLE)

HSP 1 Score: 55.8 bits (133), Expect = 5.700e-8
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   22 SGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR 126
            +G S+CVVW G+HHKT+ +GG++ FGYPD  YF R
Sbjct:  212 TGASNCVVWQGIHHKTSPTGGTSSFGYPDPTYFER 246
[Close]
BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Match: A0A835ZAV4_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.800e-8
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:   22 SGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR 126
            +G  +CV+WNGVHHKT  +GG   FGYPD  YF R
Sbjct:  101 TGIPNCVIWNGVHHKTRTNGGVQAFGYPDPTYFER 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197043.5496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIP8_ECTSI9.470e-1171.43RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A2A9MLR5_9APIC8.520e-1068.57RING-type E3 ubiquitin transferase n=1 Tax=Besnoit... [more]
B9PZT1_TOXGV5.560e-968.57RING-type E3 ubiquitin transferase n=15 Tax=Toxopl... [more]
A0A7S1CPA8_9STRA7.590e-965.71RING-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
A0A3P7JJE5_STRVU1.490e-860.00E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Str... [more]
A0A7R9WB62_9STRA1.560e-862.86RING-type E3 ubiquitin transferase n=1 Tax=Pseudic... [more]
A0A0V0QH40_PSEPJ1.940e-865.71RING-type E3 ubiquitin transferase n=1 Tax=Pseudoc... [more]
F0Y4T2_AURAN4.120e-862.86RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A078BBQ5_STYLE5.700e-860.00RING-type E3 ubiquitin transferase n=1 Tax=Stylony... [more]
A0A835ZAV4_9STRA5.800e-860.00RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197043contigH-elongata_contig197043:455..583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue9.2e-09
Seed eggNOG ortholog2880.D8LIP8
Preferred nameDTX3L
KEGG koko:K06058
KEGG Pathwayko04330,map04330
GOsGO:0000209,GO:0000323,GO:0002230,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004842,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006325,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006996,GO:0007034,GO:0007041,GO:0008047,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010390,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0016043,GO:0016192,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032268,GO:0032269,GO:0032446,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033523,GO:0033554,GO:0034641,GO:0035561,GO:0035563,GO:0036211,GO:0042393,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0043900,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045739,GO:0045893,GO:0045935,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050688,GO:0050691,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051338,GO:0051340,GO:0051347,GO:0051348,GO:0051352,GO:0051438,GO:0051444,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0051865,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097677,GO:0098772,GO:0140096,GO:1900180,GO:1900182,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901664,GO:1901666,GO:1902680,GO:1902965,GO:1902966,GO:1903320,GO:1903321,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1905666,GO:1905668,GO:2000112,GO:2000644,GO:2000646,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001032,GO:2001034,GO:2001141
EggNOG free text desc.regulation of NAD ADP-ribosyltransferase activity
EggNOG OGs2CTH7@1,2RGAW@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930115.415615-CDS-H-elongata_contig197043:454..5831622930115.415615-CDS-H-elongata_contig197043:454..583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197043 455..583 +
1691679286.4579654-CDS-H-elongata_contig197043:454..5831691679286.4579654-CDS-H-elongata_contig197043:454..583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197043 455..583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197043.5496.1prot_H-elongata_contig197043.5496.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197043 455..583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197043.5496.1

>prot_H-elongata_contig197043.5496.1 ID=prot_H-elongata_contig197043.5496.1|Name=mRNA_H-elongata_contig197043.5496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MFRLEWRSGRSDCVVWNGVHHKTNVSGGSAIFGYPDRDYFTR*
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mRNA from alignment at H-elongata_contig197043:455..583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197043.5496.1 ID=mRNA_H-elongata_contig197043.5496.1|Name=mRNA_H-elongata_contig197043.5496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig197043:455..583+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCGTCTGGAATGGCGTTCAGGCCGCTCTGACTGTGTCGTCTGGAA
TGGCGTCCATCATAAGACCAATGTTTCCGGGGGCAGCGCGATTTTCGGCT
ATCCCGACAGAGACTACTTCACCCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig197043:455..583+

>mRNA_H-elongata_contig197043.5496.1 ID=mRNA_H-elongata_contig197043.5496.1|Name=mRNA_H-elongata_contig197043.5496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig197043:455..583+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCGTCTGGAATGGCGTTCAGGCCGCTCTGACTGTGTCGTCTGGAA
TGGCGTCCATCATAAGACCAATGTTTCCGGGGGCAGCGCGATTTTCGGCT
ATCCCGACAGAGACTACTTCACCCGGTGAATGTTTCGTCTGGAATGGCGT
TCAGGCCGCTCTGACTGTGTCGTCTGGAATGGCGTCCATCATAAGACCAA
TGTTTCCGGGGGCAGCGCGATTTTCGGCTATCCCGACAGAGACTACTTCA
CCCGGTGA
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