mRNA_H-elongata_contig1964.5477.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Match: A0A6H5JZG3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE) HSP 1 Score: 114 bits (286), Expect = 3.480e-26 Identity = 63/114 (55.26%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 223 SLERCNLKASPATGLVGMQENNFLRDFFGCLGFCPLTTRSEIHETIVRMMTTTPTPNVVLFPRDCGEEDDRNVLTVANDTAPRKAPRLDKDQGAKGPSTCVFWSAVALGALVTG 564
+L+RC KASPATGLVGM EN FL DFF C+GF PLTT+S I ET+V+MM T+ F RDC E+D VL D A ++Q GPSTC FW AVALGALV G
Sbjct: 93 ALKRCKFKASPATGLVGMPENTFLGDFFACVGFVPLTTQSHIRETMVKMMVTSTPSQKSAFGRDCDEDD---VLAKEGDIRILSA----ENQLDAGPSTCTFWCAVALGALVKG 199
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE) HSP 1 Score: 102 bits (255), Expect = 5.130e-22 Identity = 74/195 (37.95%), Postives = 92/195 (47.18%), Query Frame = 1
Query: 1 SRCLVSNEGHVCTYQKRKSHKV-----HXXXXXXXXRTSSSKPTRASELGMVSEAGMIRSEGTYASFVWPRRSRFELRSSLERCNLKASPATGLVGMQENNFLRDFFGCLGFCPLTTRSEIHETIVRMMTTTPTPNVVLFPRDCGEEDDRNVLTVANDTAPRKAPRLDKDQGAKGPSTCVFWSAVALGALVTGWP 570
SRCL S G CTY KRK H+ H S++ R S G + +GM+ L+R L ASPATGLVGMQEN FL DFFGC+GF PLTT S I +VRMMT + P+ + D E+ + + + Q + GPS C FW AV +GALV G P
Sbjct: 39 SRCLRS--GVQCTYSKRKPHQPQTQHQHQRRPRGPACMPSTELLRHSSSGALQASGML---------------------PLKRFRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHQLGASYDSPEQCQFDAILTEDGIT-------TGSQLSTGPSACTFWCAVGVGALVNGSP 203
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 2.080e-21 Identity = 56/115 (48.70%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 229 ERCNLKASPATGLVGMQENNFLRDFFGCLGFCPLTTRSEIHETIVRMMTTTPTPNVVLFPRDCGEEDDR-NVLTVANDTAPRKAPRLDKDQGAKGPSTCVFWSAVALGALVTGWP 570
+RC L ASPATGLVGMQEN FL DFFGC+GF PLTT S I ET+V +M + +F DC E + D + A ++Q PS C FW AVALGAL G P
Sbjct: 9 KRCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIMLPRASSQQSVFGDDCDEGGHYFEAVAPGGDLSKTSA----RNQFPMDPSACTFWCAVALGALAKGSP 119
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Match: D8LU08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU08_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 1.320e-20 Identity = 53/112 (47.32%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 226 LERCNLKASPATGLVGMQENNFLRDFFGCLGFCPLTTRSEIHETIVRMMTTTPTPNVVLFPRDCGEEDDRNVLTVANDTAPRKAPRLDKDQGAKGPSTCVFWSAVALGALVT 561
++R L ASPA GLVGMQEN FL DFFGC+GF PLTT+ I ET+V+MM + + DC E + N+L GPSTC+FW AVALGALV+
Sbjct: 105 MKRFRLSASPAIGLVGMQENTFLTDFFGCVGFLPLTTQRHIRETMVKMMASPASRRQSAAGTDCDEAPELNLLM--------------------GPSTCIFWCAVALGALVS 196
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 3.000e-20 Identity = 52/115 (45.22%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 226 LERCNLKASPATGLVGMQENNFLRDFFGCLGFCPLTTRSEIHETIVRMMTTTPTPNVVLFPRDCGEEDDRNVLTVANDTAPRKAPRLDKDQGAKGPSTCVFWSAVALGALVTGWP 570
L+RC L ASPATGLVGMQEN FL DFFGC+GF PLTTRS + +VRMM + + + D ++ + + +Q + GPS C FW AV +GALV G P
Sbjct: 93 LKRCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTRSHVRGAMVRMMAHSAAQHQLRARHDTPDQGQFGAIFSEDGIT-------TGNQLSTGPSACTFWCAVGVGALVKGRP 200
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 1.300e-19 Identity = 53/114 (46.49%), Postives = 64/114 (56.14%), Query Frame = 1
Query: 229 ERCNLKASPATGLVGMQENNFLRDFFGCLGFCPLTTRSEIHETIVRMMTTTPTPNVVLFPRDCGEEDDRNVLTVANDTAPRKAPRLDKDQGAKGPSTCVFWSAVALGALVTGWP 570
+R ASPATGLVGMQEN L DFFGC+GF PLTTRS I +VRMMT++ + P D + + + P +Q + GPS C FW AV LGALV G P
Sbjct: 24 KRFRWSASPATGLVGMQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTSSTPHHQPGAPHDSPAQGHFGSIFTEDGITPG-------NQLSTGPSACTFWCAVGLGALVKGSP 130
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 1.570e-19 Identity = 56/120 (46.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 229 ERCNLKASPATGLVGMQENNFLRDFFGCLGFCPLTTRSEIHETIVRMMTTTPTPNVVLFPRDCGEEDDRN-----VLTVANDTAPRKA-PRLDKDQGAKGPSTCVFWSAVALGALVTGWP 570
+RC L ASPATGLV MQEN FL DFFGC+GF PLTT S+I ET+V++M + +F G+ D+ + D + A +L D PS C FW AVALGALV G P
Sbjct: 5 KRCRLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMVPPASSQQSVF----GDGSDKRGHYFEAVAPGGDLSKISAGSQLPMD-----PSACTFWCAVALGALVKGSP 115
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 3.130e-19 Identity = 68/189 (35.98%), Postives = 84/189 (44.44%), Query Frame = 1
Query: 4 RCLVSNEGHVCTYQKRKSHKVHXXXXXXXXRTSSSKPTRASELGMVSEAGMIRSEGTYASFVWPRRSRFELRSSLERCNLKASPATGLVGMQENNFLRDFFGCLGFCPLTTRSEIHETIVRMMTTTPTPNVVLFPRDCGEEDDRNVLTVANDTAPRKAPRLDKDQGAKGPSTCVFWSAVALGALVTGWP 570
RC+ + G CTY KR+ H R S T E+ + S P R L+R L ASPA GLVGMQE+ FL DFFGC+GF PLTTRS I E +V++M T T C EE + + D + Q P +C FW A+ALGAL G P
Sbjct: 45 RCVRT--GSNCTYSKRRWHLPQPHGQQHQPRPSRRDRTHRKEVLLQSSP--------------PEALVSSARLPLKRLRLSASPAVGLVGMQESAFLSDFFGCVGFLPLTTRSTIREAMVQIMATPATLQRPAVGGGCDEEALFDAIARGEDLINAS----EGHQHPMNPRSCTFWCAIALGALAKGSP 213
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Match: A0A6H5JUG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG6_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 4.420e-19 Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = 1
Query: 223 SLERCNLKASPATGLVGMQENNFLRDFFGCLGFCPLTTRSEIHETIVRMMTTTPTPNVVLFPRDCGEEDDRNVLTVANDTAPRKAPRLDKDQGAKGPSTCVFWSAVALGALVTGWP 570
+++R L ASPATGLVGMQEN+FL FF +GF PLTTR ++ ET+V +M + T + DC E++ + L + N + +G P TC FW AVA+GAL G P
Sbjct: 45 AIKRFRLSASPATGLVGMQENSFLTSFFSSVGFLPLTTRRDVRETMVTLMMSA-TRQQSIATEDCDVEENSHALVLENKVC-------NTSEGDDFPKTCTFWCAVAIGALAKGHP 152
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.130e-18 Identity = 53/115 (46.09%), Postives = 63/115 (54.78%), Query Frame = 1
Query: 226 LERCNLKASPATGLVGMQENNFLRDFFGCLGFCPLTTRSEIHETIVRMMTTTPTPNVVLFPRDCGEEDDRNVLTVANDTAPRKAPRLDKDQGAKGPSTCVFWSAVALGALVTGWP 570
L+R L ASPATGLVGMQEN FL DFFGC+GF PLT+ S I ET+VR+M + C E N+ + R +D STC FW A+ALGAL G P
Sbjct: 108 LKRFRLSASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVRIMASPAPLQQSAIGGACSEVGTMVRAPCWNEASERNQLPMDA-------STCTFWCAIALGALAKGSP 215 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1964.5477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1964.5477.1 >prot_H-elongata_contig1964.5477.1 ID=prot_H-elongata_contig1964.5477.1|Name=mRNA_H-elongata_contig1964.5477.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp SRCLVSNEGHVCTYQKRKSHKVHKVHNIHKSRTSSSKPTRASELGMVSEAback to top mRNA from alignment at H-elongata_contig1964:9982..11976- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1964.5477.1 ID=mRNA_H-elongata_contig1964.5477.1|Name=mRNA_H-elongata_contig1964.5477.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1995bp|location=Sequence derived from alignment at H-elongata_contig1964:9982..11976- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1964:9982..11976- >mRNA_H-elongata_contig1964.5477.1 ID=mRNA_H-elongata_contig1964.5477.1|Name=mRNA_H-elongata_contig1964.5477.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig1964:9982..11976- (Himanthalia elongata Himel1 dioecious)back to top |