mRNA_H-elongata_contig19627.5471.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19627.5471.1
Unique NamemRNA_H-elongata_contig19627.5471.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.450e-42
Identity = 105/273 (38.46%), Postives = 154/273 (56.41%), Query Frame = 1
Query:    7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIR 798
            T+NVRT++  G N  GH    ++   A  +CD I +Q TRR G+  I       ++  S    G   K G+ GVG+ ++E++  ++G  G   E I  RL+KV          TF+VGYAPT+TA          K  FW  L + + EV + DHL+++MDANARTG R +G    DA+++G YGRD +++NG ++L  AA+ +L +++T+  TPK G      +    KE HR  LD+IL+RQ DRRLVRN +V       S+H LV  ++R
Sbjct:   94 TFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHDGY--VIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVR 360          
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.580e-42
Identity = 102/274 (37.23%), Postives = 154/274 (56.20%), Query Frame = 1
Query:    7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIRL 801
            T+NVRT++  G N  GH    ++   +   CD I +Q TRR G+  I       ++  S    G   K G+ GVG+V++E++  ++G +G   E I  RL+KV           F+VGYAPT+T  T        K  FW  L + + EV + DHL+++MDANARTG R +G    DA+++G YGRD +++NG ++L  A++ +L + +T+  TPK G      +    KE +R  LD+IL+RQ DRR VRN++V       S+H LV  ++RL
Sbjct:   85 TFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGY--VIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 352          
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.320e-41
Identity = 101/274 (36.86%), Postives = 154/274 (56.20%), Query Frame = 1
Query:    7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIRL 801
            T+NVRT++  G N  GH    ++   +   CD I +Q TRR G+  I       ++  S    G   K G+ GVG+ ++E++  ++G +G   E I  RL+KV          TF+VGYAPT+T  T        K  FW  L + + EV + DHL+++MDANARTG R +G    DA+++G YGRD +++NG ++L  A++ +L + +T+  TPK G      +    KE +R  LD+I +RQ DRR VRN++V       S+H+LV  ++RL
Sbjct:  179 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGY--VIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRL 446          
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.880e-40
Identity = 96/255 (37.65%), Postives = 145/255 (56.86%), Query Frame = 1
Query:    7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITV 750
            T+NVRT++  G N  GH    ++   +   CD I +Q TRR G+  I       ++  S    G   K G+ GVG+ ++E++  ++G +G   E I  RL+KV          TF+VGYAPT+T  T        K  FW  L + + EV + DHL+++MDANARTG R +G    DA+++G YGRD +++NG ++L  A++ +L + +T++ TPK G      +    KE +R  LD IL+RQ DRR VRN++V
Sbjct:   90 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGY--VIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPKGGVQHTFQSSNKGKEKYR--LDLILMRQTDRRFVRNVSV 338          
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 3.070e-39
Identity = 100/274 (36.50%), Postives = 152/274 (55.47%), Query Frame = 1
Query:    7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIRL 801
            T+NV T++  G N  GH    ++   +   CD I +Q TRR G+  I       ++  S    G   K G+ GVG+ ++E++  ++G +G   E I  RL+KV          TF+V YAPT+T  T        K  FW  L + + EV + DHL+++MDANARTG R +G    DA+++G YGRD +++NG ++L  A++ +L + +T+  TPK G      +    KE +R  LD+IL+RQ DRR VRN++V       S+H LV  ++RL
Sbjct:  661 TFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGY--VIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 928          
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.800e-39
Identity = 104/274 (37.96%), Postives = 146/274 (53.28%), Query Frame = 1
Query:    1 VATWNVRTMSERGTNDPGHAEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFK-HRAATTFIVGYAPTKTAATCHKSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHP------KMKSNHRLVSVSIRL 801
            VATWNVRT++  G N  G A  +L  AA+ +   + +Q TRR GRT  +  AA   V C   C  + G  G+ GVG+ V+ES+ +   +     E I E L+ +  +   HR A  F+  YAPT+ +    K  FW +L S V  +P+ + + ++MDANARTG R +G   GD RV+G YGRD ++DNG+ +L  A   +L + +TF  T K G      TY G   +    LDYIL RQ     V N+ V P      K  S+H +V  +I L
Sbjct:  115 VATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRT--EFAAAGFRVFC---CGTETG--GVHGVGIAVKESLCK---TSTFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTEPSTADSKRVFWGKLDSLVRRIPSKECVHVLMDANARTGDRLDG---GDGRVIGMYGRDELNDNGMLLLNFATGNRLALTNTFFETRKGG---IWHTYNGVSGNDCKRLDYILTRQAHHGRVSNVVVIPQPVRPVKADSDHNMVVATINL 372          
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.260e-38
Identity = 90/230 (39.13%), Postives = 136/230 (59.13%), Query Frame = 1
Query:   67 LLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVR 738
            ++   A  +CD I +Q TRR G+  I       ++  S    G   K G+ GVG+ ++E++  ++G  G   E I  RL+KV          TF+VGYAPT+TA          K  FW  L + + EV + DHL+++MDANARTG R +G    DA+++G YGRD +++NG ++L  AA+ +L +++T++ TPK G ++   + +G KE HR  LD+IL+RQ DRRLVR
Sbjct:    3 VMQICAATDCDVIGLQETRRAGQGAITHDGY--VIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYIRTPK-GVHTFQSSNKG-KEKHR--LDFILMRQTDRRLVR 224          
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.760e-38
Identity = 100/274 (36.50%), Postives = 151/274 (55.11%), Query Frame = 1
Query:    7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIRL 801
            T++VRT+   G N  GH    ++  ++   CD I +Q TRR G+  I       ++  S    G   K G  GVG+ ++E++   +G +G   E I  RL+KV          TF+VGYAPT+T           K  FW  L + + EV + DHL+++MDANARTG R +G    DA+++G YGRD +++NG ++L  A++ +L + +T+  TPK GG    F     K   ++ LD+IL+RQ DRR VRN++V       S+H LV  ++RL
Sbjct:  159 TFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGY--VIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQCSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRL 426          
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.450e-38
Identity = 93/244 (38.11%), Postives = 136/244 (55.74%), Query Frame = 1
Query:   94 CDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIRL 801
            CD I +Q TRR G+  I       ++  S    G   K G+ GVG+ ++E++  ++G +G   E I  RL+KV          TF+VGYAPT+T  T        K  FW  L + + EV + DHL+++MDANARTG R    G  DA+VLG YGRD +++NG ++   A++ +  + +T+  TPK G      +    KE +R  LD+IL+RQ DRR VRN++V       S+H LV  ++RL
Sbjct:   12 CDVIGLQETRREGQGSIAHDGY--VIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249          
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 3.630e-38
Identity = 96/252 (38.10%), Postives = 142/252 (56.35%), Query Frame = 1
Query:   67 LLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIR 798
            ++   A  +CD I +Q TRR G+  I       ++  S    G   K G+ GVG+ ++E++  ++G  G   E I  RL+KV          TF+VGYAPT+TA          K  FW  L + + EV + DHL+++MDANARTG R +G    DA+++G YGRD +++NG ++L  AA+ +L +++T+  TPK G      +    KE HR  LD+IL+RQ DRRLVRN +V       S+H LV  ++R
Sbjct:    3 VMQICAATDCDVIGLQETRRAGQGAITHDGY--VIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVR 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQH5_9PHAE1.450e-4238.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KV75_9PHAE5.580e-4237.23Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K3Q1_9PHAE1.320e-4136.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMB4_9PHAE3.880e-4037.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1H7_9PHAE3.070e-3936.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDS6_9PHAE3.800e-3937.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP87_9PHAE1.260e-3839.13Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JVN7_9PHAE1.760e-3836.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBZ6_9PHAE2.450e-3838.11Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KC90_9PHAE3.630e-3838.10Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19627contigH-elongata_contig19627:2722..3522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score87.8
Seed ortholog evalue8e-15
Seed eggNOG ortholog6500.XP_005107471.1
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BKMM@33208,3D1CS@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size801
Cds size777
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.7592514-UTR-H-elongata_contig19627:2721..27451622930112.7592514-UTR-H-elongata_contig19627:2721..2745Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19627 2722..2745 +
1691679285.3847082-UTR-H-elongata_contig19627:2721..27451691679285.3847082-UTR-H-elongata_contig19627:2721..2745Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19627 2722..2745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.772491-CDS-H-elongata_contig19627:2745..35221622930112.772491-CDS-H-elongata_contig19627:2745..3522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19627 2746..3522 +
1691679285.39656-CDS-H-elongata_contig19627:2745..35221691679285.39656-CDS-H-elongata_contig19627:2745..3522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19627 2746..3522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19627.5471.1prot_H-elongata_contig19627.5471.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19627 2746..3522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19627.5471.1

>prot_H-elongata_contig19627.5471.1 ID=prot_H-elongata_contig19627.5471.1|Name=mRNA_H-elongata_contig19627.5471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
MSERGTNDPGHAEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVH
CSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIF
KHRAATTFIVGYAPTKTAATCHKSKFWKELRSTVAEVPASDHLILMMDAN
ARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLS
TPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPKMKSNH
RLVSVSIRL
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mRNA from alignment at H-elongata_contig19627:2722..3522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19627.5471.1 ID=mRNA_H-elongata_contig19627.5471.1|Name=mRNA_H-elongata_contig19627.5471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=801bp|location=Sequence derived from alignment at H-elongata_contig19627:2722..3522+ (Himanthalia elongata Himel1 dioecious)
GTTGCCACATGGAACGTCCGCACCATGTCCGAGAGAGGGACCAATGACCC GGGGCACGCGGAGGATCTTTTGATATTCGCTGCGAAGTACGAGTGCGACT TCATCGCCATACAGGGGACTCGCCGCAATGGAAGGACAATCATCCAAGCA CCAGCCGCTAGTGATATCGTGCACTGCAGTGATCATTGCGATGGTGATGG AGGTAAGTCCGGGATACTCGGAGTTGGTATGGTTGTCAGGGAGTCTATCG CTCGCGCACTTGGCTCAGATGGCATTGTGCCGGAACACATCAGGGAGCGG CTGTTGAAGGTGAGTGGGATTTTCAAACACAGAGCCGCCACAACCTTCAT CGTGGGATACGCTCCGACTAAAACAGCAGCCACCTGTCACAAGTCTAAGT TCTGGAAGGAACTTCGTAGCACTGTTGCTGAGGTACCTGCCAGCGACCAC CTGATTTTGATGATGGATGCTAACGCCCGTACGGGAGGAAGGGGAGAGGG AGCTGGACTAGGGGATGCCCGGGTTTTGGGACCATACGGCAGAGACACTG TCGATGATAACGGGTTGCAAATTCTAGCATGTGCTGCCGAGTACAAGCTG CCGATTGTCAGCACCTTTTTAAGCACGCCGAAGCGTGGGGGAAACTCGGA TGCGTTCACATACGAGGGTCCAAAGGAATCCCACCGCTGGTGCCTGGACT ACATCCTGGTACGACAGCATGACCGCAGGCTCGTCCGGAATATCACTGTC CACCCGAAGATGAAATCAAACCACCGCTTGGTTTCAGTTTCTATCCGCCT C
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Coding sequence (CDS) from alignment at H-elongata_contig19627:2722..3522+

>mRNA_H-elongata_contig19627.5471.1 ID=mRNA_H-elongata_contig19627.5471.1|Name=mRNA_H-elongata_contig19627.5471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig19627:2722..3522+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGAGAGAGGGACCAATGACCCGGGGCACGCGGAGGATCTTTTGAT
ATTCGCTGCGAAGTACGAGTGCGACTTCATCGCCATACAGGGGACTCGCC
GCAATGGAAGGACAATCATCCAAGCACCAGCCGCTAGTGATATCGTGCAC
TGCAGTGATCATTGCGATGGTGATGGAGGTAAGTCCGGGATACTCGGAGT
TGGTATGGTTGTCAGGGAGTCTATCGCTCGCGCACTTGGCTCAGATGGCA
TTGTGCCGGAACACATCAGGGAGCGGCTGTTGAAGGTGAGTGGGATTTTC
AAACACAGAGCCGCCACAACCTTCATCGTGGGATACGCTCCGACTAAAAC
AGCAGCCACCTGTCACAAGTCTAAGTTCTGGAAGGAACTTCGTAGCACTG
TTGCTGAGGTACCTGCCAGCGACCACCTGATTTTGATGATGGATGCTAAC
GCCCGTACGGGAGGAAGGGGAGAGGGAGCTGGACTAGGGGATGCCCGGGT
TTTGGGACCATACGGCAGAGACACTGTCGATGATAACGGGTTGCAAATTC
TAGCATGTGCTGCCGAGTACAAGCTGCCGATTGTCAGCACCTTTTTAAGC
ACGCCGAAGCGTGGGGGAAACTCGGATGCGTTCACATACGAGGGTCCAAA
GGAATCCCACCGCTGGTGCCTGGACTACATCCTGGTACGACAGCATGACC
GCAGGCTCGTCCGGAATATCACTGTCCACCCGAAGATGAAATCAAACCAC
CGCTTGGTTTCAGTTTCTATCCGCCTCATGTCCGAGAGAGGGACCAATGA
CCCGGGGCACGCGGAGGATCTTTTGATATTCGCTGCGAAGTACGAGTGCG
ACTTCATCGCCATACAGGGGACTCGCCGCAATGGAAGGACAATCATCCAA
GCACCAGCCGCTAGTGATATCGTGCACTGCAGTGATCATTGCGATGGTGA
TGGAGGTAAGTCCGGGATACTCGGAGTTGGTATGGTTGTCAGGGAGTCTA
TCGCTCGCGCACTTGGCTCAGATGGCATTGTGCCGGAACACATCAGGGAG
CGGCTGTTGAAGGTGAGTGGGATTTTCAAACACAGAGCCGCCACAACCTT
CATCGTGGGATACGCTCCGACTAAAACAGCAGCCACCTGTCACAAGTCTA
AGTTCTGGAAGGAACTTCGTAGCACTGTTGCTGAGGTACCTGCCAGCGAC
CACCTGATTTTGATGATGGATGCTAACGCCCGTACGGGAGGAAGGGGAGA
GGGAGCTGGACTAGGGGATGCCCGGGTTTTGGGACCATACGGCAGAGACA
CTGTCGATGATAACGGGTTGCAAATTCTAGCATGTGCTGCCGAGTACAAG
CTGCCGATTGTCAGCACCTTTTTAAGCACGCCGAAGCGTGGGGGAAACTC
GGATGCGTTCACATACGAGGGTCCAAAGGAATCCCACCGCTGGTGCCTGG
ACTACATCCTGGTACGACAGCATGACCGCAGGCTCGTCCGGAATATCACT
GTCCACCCGAAGATGAAATCAAACCACCGCTTGGTTTCAGTTTCTATCCG
CCTC
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