mRNA_H-elongata_contig106668.546.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106668.546.1
Unique NamemRNA_H-elongata_contig106668.546.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106668.546.1 vs. uniprot
Match: D7G442_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G442_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 2.010e-104
Identity = 162/234 (69.23%), Postives = 201/234 (85.90%), Query Frame = 1 
Query:    7 DVTEFMQGRVDLAGGRFLFLSKSENLTELFGDPCPGREKCLIIHYEILGEEGKVEALESDGYLTKPISISCMPVLAPLIVVESATYGQTVIGINERLRIVQKELSDLLSLQNRKDMGMPLCRHDNRRLIRLRPLIAELESLQGLTPKHVDITSLVQRRVEELGGGVLEFVVGGDDLNLMFGNPLPRQKKELRVRYLITGHDSEQETSLEETTTSGYPRNFILQRKGQVVVQAND 708
            DVTEFMQGRVDLA G++LF+S+ E LT+LFGDPCPGR+KCL+I YEI+G EG+ EA+ESDG L  PISISC P+LAPLI+VESATYGQT  GI+ERL++VQ+ELSDL ++QNRKD+GMPL R DN+RL+ LRPLI +L+ L+ LTP++VDI + +Q RVEE GGG+LEFV    D+N +FGNP+P ++KELRVRYL+ GHDSE+ TSLEETT+SGYPRNFILQR+GQVVVQ  +
Sbjct:  144 DVTEFMQGRVDLADGKYLFMSRKEPLTDLFGDPCPGRDKCLVIRYEIVGTEGRAEAIESDGRLLTPISISCTPMLAPLILVESATYGQTREGIDERLQLVQRELSDLFAIQNRKDIGMPLSREDNKRLMGLRPLIGDLKYLKKLTPRYVDIRARLQARVEEHGGGLLEFVAAQTDVNQLFGNPMPGKRKELRVRYLVVGHDSERLTSLEETTSSGYPRNFILQRQGQVVVQGGE 377
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BLAST of mRNA_H-elongata_contig106668.546.1 vs. uniprot
Match: A0A7S1UG82_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG82_9STRA)

HSP 1 Score: 165 bits (417), Expect = 6.030e-45
Identity = 92/204 (45.10%), Postives = 126/204 (61.76%), Query Frame = 1 
Query:    7 DVTEFMQGRVDLAGGRFLFLSKSENLTELFGDPCPGREKCLIIHYEILGEEGKVEALESDGYLTKPISISCMPVLAPLIVVESATYGQTVIGINERLRIVQKELSDLLSLQNRKDMGMPLCRHDNRRLIRLRPLIAELESLQGLTPKHVDITSLVQRRVEELGGGVLEFVVGGD-DLNLMFGNPLPRQKKELRVRYLITGHDSE 615
            DV+E +  RV    G++L +  +ENL  LFGDP PGR+K L + YEI G +G+V A+ESDG+L  PI+IS  P +AP+I++E A++G    GI  R+  + K+L  L +   R+  G+ L R +   L +   L  EL  L+  TP   DIT  +Q RV++ GGG   F VG D DLN +FGNP+P   KELR+ Y I GHDSE
Sbjct:  158 DVSEVLNNRVIATEGKYLEIKATENLEPLFGDPQPGRDKELRLDYEITGAQGRVSAIESDGFLQSPIAISSYPQIAPMIIIEHASWGLDAEGIRLRIEALMKQLFKLTTYAARESAGLSLSRKEVLALSKADELQVELMDLENATPHFHDITRDIQARVDKDGGG--RFDVGADEDLNEVFGNPMPGHDKELRITYSIMGHDSE 359
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BLAST of mRNA_H-elongata_contig106668.546.1 vs. uniprot
Match: A0A7S0SUF6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUF6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 5.000e-44
Identity = 102/289 (35.29%), Postives = 165/289 (57.09%), Query Frame = 1 
Query:    7 DVTEFMQGRVDLAGGRFLFLSKSENLTELFGDPCPGREKCLIIHYEILGEEGKVEALESDGYLTKPISISCMPVLAPLIVVESATYGQTVIGINERLRIVQKELSDLLSLQNRKDMGMPLCRHDNRRLIRLRP-LIAELESLQGLTPKHVDITSLVQRRVEELGGGVLEFVVGGDDLNLMFGNPLPRQKKELRVRYLITGHDSEQETSLEETTTSGYPRNFILQRKGQVVVQANDDQM-GRGILEENVLVDSPKVLPVIEILNSSYGHPRNAAKTYDISTKLRSMIERQ 867
            DVTE +QG VDL GG +L LS   +++++FGDPCPG  K L I YE+ G  G +   E  G+L K I I   P +APL++V+ ATYG T     +RLR ++KEL  + +L+++   G+ +   D   L   +  +I ++ + +      +DIT+ +QR  ++ GG  L+      D NL+FGNP+P   K L V     GHDSE+     E T  G+PRN+I  +  + VV   ++++ G+  L E+V+ +S    P+I I+ ++YG   N++   D +T+++  ++ Q
Sbjct:  199 DVTEIVQGFVDLMGGSYLNLSPQSSVSQMFGDPCPGYTKDLRIEYEVSGRNGSIVRDEFRGHLKKRIYIEETPTVAPLLLVDKATYGVTPTSRRDRLRQLEKELIRIKTLEHKIHSGLYVSPDDYNYLNNNKQKIIDDMAATREAPISFLDITTKLQRLADK-GGISLKLDKETFDPNLVFGNPMPGALKFLEVNLTCPGHDSERFADSREVTGGGFPRNYITNKSARFVVPVVENRLNGKARLAESVVFESSFAGPIITIVRATYGDFSNSSHLIDCTTEVQLKVKGQ 486
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BLAST of mRNA_H-elongata_contig106668.546.1 vs. uniprot
Match: A0A024U3R6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3R6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.890e-5
Identity = 37/110 (33.64%), Postives = 53/110 (48.18%), Query Frame = 1 
Query:   19 FMQGRVDLAG--GRFLFLSKSENLTELFGDPCPGREKCLIIHYEILG------------------------EEGKVEA-LESDGYLTKPISISCMPVLAPLIVVESATYG 267
            F+Q R+D A   G  L +   ENL  LFGDPCPG  + L++ Y +LG                        + GK+   + ++G+L KP+SIS   V  P +VV  A +G
Sbjct:  327 FLQARIDRAQVPGSCLSIHTDENLNALFGDPCPGLPRLLVVEYSLLGYGETGSDDEIIKKGGGHSRNFAMAKGGKLRLHVAAEGFLAKPVSISIQEVF-PSLVVSRAYFG 435
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106668.546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G442_ECTSI2.010e-10469.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1UG82_9STRA6.030e-4545.10Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S0SUF6_9STRA5.000e-4435.29Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A024U3R6_9STRA3.890e-533.64Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106668contigH-elongata_contig106668:36..1626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.4
Seed ortholog evalue6.6e-87
Seed eggNOG ortholog2880.D7G442
EggNOG OGs2EP30@1,2SSCD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size867
Cds size846
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106668.546.1prot_H-elongata_contig106668.546.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106668 57..1626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929596.760783-UTR-H-elongata_contig106668:35..561622929596.760783-UTR-H-elongata_contig106668:35..56Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106668 36..56 +
1691679084.6454306-UTR-H-elongata_contig106668:35..561691679084.6454306-UTR-H-elongata_contig106668:35..56Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106668 36..56 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929596.775396-CDS-H-elongata_contig106668:56..2561622929596.775396-CDS-H-elongata_contig106668:56..256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106668 57..256 +
1691679084.6715462-CDS-H-elongata_contig106668:56..2561691679084.6715462-CDS-H-elongata_contig106668:56..256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106668 57..256 +
1622929596.7899582-CDS-H-elongata_contig106668:551..7521622929596.7899582-CDS-H-elongata_contig106668:551..752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106668 552..752 +
1691679084.6852188-CDS-H-elongata_contig106668:551..7521691679084.6852188-CDS-H-elongata_contig106668:551..752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106668 552..752 +
1622929596.8038793-CDS-H-elongata_contig106668:896..10741622929596.8038793-CDS-H-elongata_contig106668:896..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106668 897..1074 +
1691679084.6971579-CDS-H-elongata_contig106668:896..10741691679084.6971579-CDS-H-elongata_contig106668:896..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106668 897..1074 +
1622929596.8144066-CDS-H-elongata_contig106668:1221..13201622929596.8144066-CDS-H-elongata_contig106668:1221..1320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106668 1222..1320 +
1691679084.7159343-CDS-H-elongata_contig106668:1221..13201691679084.7159343-CDS-H-elongata_contig106668:1221..1320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106668 1222..1320 +
1622929596.8257687-CDS-H-elongata_contig106668:1458..16261622929596.8257687-CDS-H-elongata_contig106668:1458..1626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106668 1459..1626 +
1691679084.7274828-CDS-H-elongata_contig106668:1458..16261691679084.7274828-CDS-H-elongata_contig106668:1458..1626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106668 1459..1626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106668.546.1

>prot_H-elongata_contig106668.546.1 ID=prot_H-elongata_contig106668.546.1|Name=mRNA_H-elongata_contig106668.546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp
MQGRVDLAGGRFLFLSKSENLTELFGDPCPGREKCLIIHYEILGEEGKVE
ALESDGYLTKPISISCMPVLAPLIVVESATYGQTVIGINERLRIVQKELS
DLLSLQNRKDMGMPLCRHDNRRLIRLRPLIAELESLQGLTPKHVDITSLV
QRRVEELGGGVLEFVVGGDDLNLMFGNPLPRQKKELRVRYLITGHDSEQE
TSLEETTTSGYPRNFILQRKGQVVVQANDDQMGRGILEENVLVDSPKVLP
VIEILNSSYGHPRNAAKTYDISTKLRSMIERQ
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mRNA from alignment at H-elongata_contig106668:36..1626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106668.546.1 ID=mRNA_H-elongata_contig106668.546.1|Name=mRNA_H-elongata_contig106668.546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1591bp|location=Sequence derived from alignment at H-elongata_contig106668:36..1626+ (Himanthalia elongata Himel1 dioecious)
CAGTTCGATGTGACCGAGTTCATGCAGGGACGAGTCGACCTGGCGGGGGG
ACGTTTTCTCTTTCTCTCCAAGAGCGAAAACTTGACGGAACTTTTCGGAG
ATCCCTGTCCCGGCCGCGAAAAATGTCTGATCATTCACTACGAAATATTG
GGGGAGGAAGGGAAGGTGGAAGCCTTGGAGTCCGATGGTTACCTAACCAA
ACCGATCAGCATTAGCTGCATGTGAGAAATGAGGCATGACTGCAGGGTTT
TCGCGTCGGCATTGTCTCCGGGCGATAAACAGGCCAGGAGGAGCGAAGGG
TATAATTTGGGATGCTTGCTTCGAAGGAACGTCGATTGTACTGACCGATC
AAAACCTTTCCCTTCCCCTATCAAACACTTCAGGTTTTCGTCGGGCAAAA
CATTAAGGGTAGATCCTTCCTTAATACTTGACTAGCGAGGTGTTCTGTCT
GGGGATAGATGCCGCCGGGCCCGATCAAAGTTTCGTGAATACGTTTGGGC
CATTTTGTACGCGCAGGCCTGTTCTGGCTCCCCTAATTGTTGTCGAATCA
GCTACCTACGGACAGACGGTGATCGGCATCAACGAACGCCTGCGTATCGT
ACAAAAGGAACTCTCGGACCTCTTGTCCTTGCAGAACCGCAAGGATATGG
GCATGCCTCTATGCCGCCACGACAACAGGCGCCTCATACGACTCAGACCG
TTGATCGCGGAGCTCGAGTGAGTGATGCTTGTTTAATCGGCGGGTATCTC
GCACTCGCTAGAAGTCGGAGAATGCCGCCAACCGTGCGTGTGGTAAACCC
GTGATCCGTGGTCGGTATCTACCCCAAAATTGAATACACTACAAACAAAC
GAAGTCCGCAGGTCCCTACAGGGATTGACTCCCAAACATGTGGACATCAC
CTCGCTGGTGCAGAGGAGGGTGGAGGAGCTCGGTGGAGGAGTGCTTGAGT
TTGTCGTGGGAGGAGATGACCTCAATCTTATGTTTGGAAACCCGTTGCCC
CGGCAGAAGAAGGAGCTTCGAGTGCGGTACCTCATCACGGTGGGGGACTA
TAAGCAAATATATCGAGTCCCTGAGATGTATTACAATCTAATGTTTACCC
CCTTGTAGTGTAATGCGGAAAAGCATGCGATGAAGAACGTGGTACGTACT
GACCCCGAGATATACGGTTCATGACCCTTGGGATAGGGGCATGACAGCGA
GCAGGAGACGTCTCTAGAGGAAACCACGACGAGCGGTTATCCGAGAAACT
TCATCTTACAGCGAAAGGGACAAGTGGTCGTTCAGGTGTGCACACACGGG
ACGCCTCGTACTTTTCCCCTCTTGCCTCAGACATCATGGAAGATCTAGAT
ACAAGTGCCACCCGACTGAACTCGATCTATAGAGGAAACTCGACATGTCC
CTTTCGCCCGAACACTGCCTCAGGCGAACGATGATCAGATGGGACGAGGA
ATACTCGAGGAGAATGTGCTAGTCGACAGCCCCAAGGTTCTACCGGTGAT
CGAGATCCTCAACTCTAGCTATGGACACCCGAGGAACGCTGCCAAGACAT
ACGATATATCCACCAAGCTCAGATCGATGATTGAGAGGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig106668:36..1626+

>mRNA_H-elongata_contig106668.546.1 ID=mRNA_H-elongata_contig106668.546.1|Name=mRNA_H-elongata_contig106668.546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig106668:36..1626+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGGACGAGTCGACCTGGCGGGGGGACGTTTTCTCTTTCTCTCCAA
GAGCGAAAACTTGACGGAACTTTTCGGAGATCCCTGTCCCGGCCGCGAAA
AATGTCTGATCATTCACTACGAAATATTGGGGGAGGAAGGGAAGGTGGAA
GCCTTGGAGTCCGATGGTTACCTAACCAAACCGATCAGCATTAGCTGCAT
ATGCAGGGACGAGTCGACCTGGCGGGGGGACGTTTTCTCTTTCTCTCCAA
GAGCGAAAACTTGACGGAACTTTTCGGAGATCCCTGTCCCGGCCGCGAAA
AATGTCTGATCATTCACTACGAAATATTGGGGGAGGAAGGGAAGGTGGAA
GCCTTGGAGTCCGATGGTTACCTAACCAAACCGATCAGCATTAGCTGCAT
GCCTGTTCTGGCTCCCCTAATTGTTGTCGAATCAGCTACCTACGGACAGA
CGGTGATCGGCATCAACGAACGCCTGCGTATCGTACAAAAGGAACTCTCG
GACCTCTTGTCCTTGCAGAACCGCAAGGATATGGGCATGCCTCTATGCCG
CCACGACAACAGGCGCCTCATACGACTCAGACCGTTGATCGCGGAGCTCG
AGCCTGTTCTGGCTCCCCTAATTGTTGTCGAATCAGCTACCTACGGACAG
ACGGTGATCGGCATCAACGAACGCCTGCGTATCGTACAAAAGGAACTCTC
GGACCTCTTGTCCTTGCAGAACCGCAAGGATATGGGCATGCCTCTATGCC
GCCACGACAACAGGCGCCTCATACGACTCAGACCGTTGATCGCGGAGCTC
GAGTCCCTACAGGGATTGACTCCCAAACATGTGGACATCACCTCGCTGGT
GCAGAGGAGGGTGGAGGAGCTCGGTGGAGGAGTGCTTGAGTTTGTCGTGG
GAGGAGATGACCTCAATCTTATGTTTGGAAACCCGTTGCCCCGGCAGAAG
AAGGAGCTTCGAGTGCGGTACCTCATCACGGTCCCTACAGGGATTGACTC
CCAAACATGTGGACATCACCTCGCTGGTGCAGAGGAGGGTGGAGGAGCTC
GGTGGAGGAGTGCTTGAGTTTGTCGTGGGAGGAGATGACCTCAATCTTAT
GTTTGGAAACCCGTTGCCCCGGCAGAAGAAGGAGCTTCGAGTGCGGTACC
TCATCACGGGGCATGACAGCGAGCAGGAGACGTCTCTAGAGGAAACCACG
ACGAGCGGTTATCCGAGAAACTTCATCTTACAGCGAAAGGGACAAGTGGT
CGTTCAGGGGCATGACAGCGAGCAGGAGACGTCTCTAGAGGAAACCACGA
CGAGCGGTTATCCGAGAAACTTCATCTTACAGCGAAAGGGACAAGTGGTC
GTTCAGGCGAACGATGATCAGATGGGACGAGGAATACTCGAGGAGAATGT
GCTAGTCGACAGCCCCAAGGTTCTACCGGTGATCGAGATCCTCAACTCTA
GCTATGGACACCCGAGGAACGCTGCCAAGACATACGATATATCCACCAAG
CTCAGATCGATGATTGAGAGGCAGGCGAACGATGATCAGATGGGACGAGG
AATACTCGAGGAGAATGTGCTAGTCGACAGCCCCAAGGTTCTACCGGTGA
TCGAGATCCTCAACTCTAGCTATGGACACCCGAGGAACGCTGCCAAGACA
TACGATATATCCACCAAGCTCAGATCGATGATTGAGAGGCAG
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