mRNA_H-elongata_contig19572.5455.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: D7FZY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY0_ECTSI) HSP 1 Score: 182 bits (463), Expect = 5.530e-53 Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 1
Query: 1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLP-ADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
VLTFEPSNSNLMDVRWS+ARPLVF+AVAEDGGIFIYDLLQSPVIPVASA LP D PRS + V ++ A GAAYSV+FNP+QRDLLATGDS+GRVI+W +SWRLANK PGE +ERL
Sbjct: 379 VLTFEPSNSNLMDVRWSRARPLVFAAVAEDGGIFIYDLLQSPVIPVASAQLPRGDALFHPRSRLVDVNDKGAVGAAYSVSFNPRQRDLLATGDSRGRVIVWRMSWRLANKRPGEDAGLERL 499
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A024GFE1_9STRA (Aconitase_C domain-containing protein (Fragment) n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GFE1_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.350e-18 Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = 1
Query: 1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASA--HLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
V+ P++S L V WSK RP VF AEDG ++IYDL+ + PV + H ADG + + ++ FNP+QR+ +A GD+ G++ IW +SWRLAN E +E L
Sbjct: 640 VIEVSPTSSYLYAVAWSKTRPAVFGVTAEDGNVYIYDLMMDKIAPVVTLKKHETADGIVAKSTSPM-----------LALDFNPRQRNFVAAGDAAGKIYIWKLSWRLANLQSDEMTVLEAL 750
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: UPI001B7F1F15 (WD repeat-containing protein 34 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7F1F15) HSP 1 Score: 84.0 bits (206), Expect = 1.780e-16 Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 1
Query: 1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
VL+ + S S L V WS RPLVF+A DG + I+DL QS + PV S A+ + Y +AFNPKQ +LLA G+S+G V IW +S L N+ P E +E+L
Sbjct: 393 VLSLQLSQSYLFSVNWSSIRPLVFAAATGDGTVLIFDLGQSSLCPVVSIEQTAERKPV-----------------YCLAFNPKQPELLAAGNSEGSVKIWRLSAELTNQGPREMTLLEQL 495
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A7S3EYX0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EYX0_9EUKA) HSP 1 Score: 77.4 bits (189), Expect = 1.350e-14 Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1
Query: 13 EPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
EP S++ V WS +RP+VF+A A DG ++IYD+ +S P + + D + A +SV FNP+ DL+ATGD+QG V IW +S L++ P E ++RL
Sbjct: 155 EPCASSIFSVDWSPSRPMVFAAGAADGNLYIYDMKRSKGKPDVTLKVTDDRS-----------------AVHSVVFNPRNPDLVATGDAQGFVKIWRLSHFLSHLAPREQQLLDRL 253
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: B3S2X2_TRIAD (Uncharacterized protein (Fragment) n=2 Tax=Trichoplax TaxID=10227 RepID=B3S2X2_TRIAD) HSP 1 Score: 75.9 bits (185), Expect = 1.150e-13 Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = 1
Query: 1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
+L+FEP N + +++WS RP+VF+ +G + IYDL S + PV + L V + ++ YS+ FN ++R LLATGD G++ IW ++ L N+ E + L
Sbjct: 322 ILSFEPGNGFMFNIKWSPVRPMVFATSTAEGSLLIYDLEISKINPVIN---------------LAVNDNKS--PVYSLQFNKQRRQLLATGDGNGKIQIWRLNDELTNQKTRETHHLAEL 424
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: UPI001CF5A4E0 (cytoplasmic dynein 2 intermediate chain 2-like n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF5A4E0) HSP 1 Score: 75.5 bits (184), Expect = 1.700e-13 Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGE 339
+ + EP L VRWS +RPLVFSAV DG + IYDL + + P S + +D + + YS+ +N ++R ++ATGDSQGR+ IW +S L N+ E
Sbjct: 393 LFSVEPGAGYLFRVRWSPSRPLVFSAVTGDGRLLIYDLKVNRINPSVSLEVTSDKSPV-----------------YSLEYNLQRRQIVATGDSQGRIKIWRLSDDLTNQSARE 488
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A7S4VTD3_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VTD3_9DINO) HSP 1 Score: 74.3 bits (181), Expect = 4.440e-13 Identity = 44/125 (35.20%), Postives = 63/125 (50.40%), Query Frame = 1
Query: 1 VLTFEPSNSNLMD-----VRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
+LT P + +L WS ARP VF+ E GG++IYD+LQS PV L A G+ S+AFNP+QR LLA GD+ GRV ++ + ++L+ + E +I L
Sbjct: 452 LLTLFPPSKHLSTCAVSAASWSSARPCVFAVAMEMGGVYIYDMLQSKQEPVLQLPLAASGSQ----------------KVTSLAFNPRQRGLLACGDAGGRVRVFRLPFKLSEQQKAEMSEISGL 560
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A7S3HF85_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF85_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.020e-12 Identity = 48/143 (33.57%), Postives = 68/143 (47.55%), Query Frame = 1
Query: 7 TFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYS-------------------------VAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
TF P ++ +S RPLVF+A + DG +++YDL +P+ PVAS P LP A + A GA+ S +AFNPKQR L+A D GRV IW +SW+L+N E ++ +
Sbjct: 72 TFSPISA----ASFSPIRPLVFAATSSDGFVYLYDLGANPLSPVASLECPL----LPPVSAEDAAKEAARGASVSTKHKPVAHKKASGGDAAHNRVTVTGLAFNPKQRGLIAACDYLGRVHIWKLSWKLSNIKADEQSTLDAI 206
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A0N8K258_SCLFO (Uncharacterized protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0N8K258_SCLFO) HSP 1 Score: 71.2 bits (173), Expect = 4.060e-12 Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query: 1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
+++ + +S + VRWS RPL+F+A +G + I+DL + PVA+ + G + Y + FNP+Q LLA G++ G V IWH+S L + P E Q+E L
Sbjct: 245 LVSLQVCDSYVFGVRWSPTRPLLFAAATGEGSVHIFDLGGMSLRPVATIEQKSGGRPV-----------------YCLEFNPRQTHLLAMGNADGTVNIWHLSTELTEQGPKEVAQLEHL 347
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A3P8Z053_ESOLU (WD repeat domain 34 n=3 Tax=Esox lucius TaxID=8010 RepID=A0A3P8Z053_ESOLU) HSP 1 Score: 70.9 bits (172), Expect = 7.110e-12 Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query: 1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
+L+ S+S L VRWS RPLVF+A G + I+DL + + P A+ G AY + FNP Q DLLA G++ G V IWH+S L + E Q+E+L
Sbjct: 394 LLSLRVSDSYLFGVRWSPTRPLVFAAATGQGLVQIFDLGRKSLRPAATMDQLTSGQP-----------------AYCMEFNPCQTDLLAVGNADGSVNIWHLSTELTEQGHRETAQLEQL 496 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19572.5455.1 >prot_H-elongata_contig19572.5455.1 ID=prot_H-elongata_contig19572.5455.1|Name=mRNA_H-elongata_contig19572.5455.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHback to top mRNA from alignment at H-elongata_contig19572:321..893+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19572.5455.1 ID=mRNA_H-elongata_contig19572.5455.1|Name=mRNA_H-elongata_contig19572.5455.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at H-elongata_contig19572:321..893+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19572:321..893+ >mRNA_H-elongata_contig19572.5455.1 ID=mRNA_H-elongata_contig19572.5455.1|Name=mRNA_H-elongata_contig19572.5455.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig19572:321..893+ (Himanthalia elongata Himel1 dioecious)back to top |