mRNA_H-elongata_contig194509.5406.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194509.5406.1
Unique NamemRNA_H-elongata_contig194509.5406.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: D7FP68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP68_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.090e-46
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
            IVGDKFLRE GG+P+ GWQ RGEKCVAEFWGKNRAKELERFRTDP+C VLLL K+GAHGLDLSFVTHMFLM+QIWDRSLETQV
Sbjct:   46 IVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAKELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQV 128          
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A6H5JNK1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK1_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 8.430e-45
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
            IVGDKFLRE GG+P+ GWQ RGEKCVAEFWGKNRAKELERFRTDP+C VLLL K+GAHGLDLSFVTHMFLM+QIWDRSLETQV
Sbjct:  371 IVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAKELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQV 453          
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A835Z414_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z414_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.380e-22
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
            +VGDK  R +G  P+ GW  RG + VAEF+G  R  EL +F+T  DC VLLL+  G+ GLDLSFVTH++L+E+IW+++LE QV
Sbjct: 1102 MVGDKMYRYYGRCPEAGWLERGSEQVAEFFGARRNDELTKFKTSADCFVLLLNMDGSTGLDLSFVTHIYLLEEIWNKALERQV 1184          
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A7S2UJZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJZ7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.170e-21
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
            ++GD+ +R+FG           +  ++E+WG  +AKEL++F   PDC ++LLS+ G+HGLDLSFVTHMF ME+IWD+SLE QV
Sbjct:  444 LIGDRLIRKFG-----------DDNISEYWGYAKAKELDKFIYSPDCFIMLLSRDGSHGLDLSFVTHMFFMEEIWDKSLEQQV 515          
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A7S3L006_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L006_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.950e-20
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQ 246
            +VGD+ L  FG             CV+E+WG+ R +EL +F +DP+C  +LL K G+ GLDLSFVTH+F +E+IWD+SL  Q
Sbjct:   12 LVGDRLLGRFG-----------SACVSEYWGRYRTQELHKFTSDPECFCMLLGKDGSEGLDLSFVTHIFFLEEIWDKSLAEQ 82          
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A7S0B0U2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B0U2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.570e-20
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    4 VGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
            VGD+ +R FGG             VAE+WG  R+KELE+F + P C  +LL K+G+HGLDLSFVT++ L+++++DRSL+ QV
Sbjct:    1 VGDRLIRRFGG-----------ASVAEYWGSTRSKELEKFVSSPSCFCMLLGKEGSHGLDLSFVTNIILLDEMYDRSLQDQV 71          
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A448ZGK3_9STRA (RING-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGK3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.950e-20
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
            I GD+ LR FG             C+AE+WGK R KEL++F  D  C+ +LL K G+ GLDLSFVTH+  +EQ+WD+SLE QV
Sbjct: 1387 ITGDRLLRRFG-----------SGCIAEYWGKYRKKELQKFVRDEKCLCMLLGKDGSEGLDLSFVTHIVFLEQVWDKSLENQV 1458          
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A1Z5KNI5_FISSO (Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNI5_FISSO)

HSP 1 Score: 90.1 bits (222), Expect = 3.290e-19
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
            +VGD+  R FG             CVAE+WG+ R +EL +F    DC+ LLL+K G+ GLDLSFVTH+FL+E+IWD++LE QV
Sbjct: 1075 VVGDRLYRRFG-----------SACVAEYWGRYRKEELSKFIHRNDCVCLLLTKDGSEGLDLSFVTHIFLLEEIWDKALEDQV 1146          
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A1Z5KLC0_FISSO (Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLC0_FISSO)

HSP 1 Score: 89.4 bits (220), Expect = 6.140e-19
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
            +VGD+  R FG             CVAE+WG+ R +EL +F    +C+ LLL+K G+ GLDLSFVTH+FL+E+IWD++LE QV
Sbjct: 1078 VVGDRLYRRFG-----------SACVAEYWGRYRKEELSKFIHHSECVCLLLTKDGSEGLDLSFVTHIFLLEEIWDKALEDQV 1149          
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A7S0C464_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C464_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.110e-18
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
            +VGD+ +R FG             C+AE+WG +R  EL +F    +C  +LL K G+HGLDLSFVTH+F +E+IWD+SL+ QV
Sbjct:  444 VVGDRLIRRFG-----------NDCIAEYWGGHRKSELAKFILSENCFCMLLGKDGSHGLDLSFVTHIFFVEEIWDKSLKDQV 515          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP68_ECTSI1.090e-4687.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNK1_9PHAE8.430e-4587.95SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A835Z414_9STRA1.380e-2254.22SNF2 family N-terminal domain-containing protein n... [more]
A0A7S2UJZ7_9STRA1.170e-2150.60Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3L006_9STRA1.950e-2047.56Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S0B0U2_9STRA3.570e-2048.78Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A448ZGK3_9STRA6.950e-2050.60RING-type domain-containing protein n=1 Tax=Pseudo... [more]
A0A1Z5KNI5_FISSO3.290e-1950.60Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fist... [more]
A0A1Z5KLC0_FISSO6.140e-1949.40Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fist... [more]
A0A7S0C464_9STRA1.110e-1846.99Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194509contigH-elongata_contig194509:53..1037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.1e-37
Seed eggNOG ortholog2880.D7FP68
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,KOG1002@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930106.347301-CDS-H-elongata_contig194509:52..1531622930106.347301-CDS-H-elongata_contig194509:52..153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194509 53..153 +
1691679282.5592933-CDS-H-elongata_contig194509:52..1531691679282.5592933-CDS-H-elongata_contig194509:52..153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194509 53..153 +
1622930106.3711007-CDS-H-elongata_contig194509:889..10371622930106.3711007-CDS-H-elongata_contig194509:889..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194509 890..1037 +
1691679282.5726767-CDS-H-elongata_contig194509:889..10371691679282.5726767-CDS-H-elongata_contig194509:889..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194509 890..1037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194509.5406.1prot_H-elongata_contig194509.5406.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194509 53..1037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194509.5406.1

>prot_H-elongata_contig194509.5406.1 ID=prot_H-elongata_contig194509.5406.1|Name=mRNA_H-elongata_contig194509.5406.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVL
LLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV
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mRNA from alignment at H-elongata_contig194509:53..1037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194509.5406.1 ID=mRNA_H-elongata_contig194509.5406.1|Name=mRNA_H-elongata_contig194509.5406.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=985bp|location=Sequence derived from alignment at H-elongata_contig194509:53..1037+ (Himanthalia elongata Himel1 dioecious)
ATCGTGGGGGACAAATTCCTCCGTGAGTTTGGCGGTTACCCGGACATGGG ATGGCAAGGCAGAGGTGAAAAATGCGTCGCCGAGTTTTGGGGGAAAAACA GGTGAGAATACAGAAGATGCACAAACAATAAAAAAAATAAGTCTTTTAAA TAAAAATAATAATAATAATAATCTTAGTAATAGTAATCGTAATATTTAAC CTCTCATGGTGTAAAGAAGGTATAGATGTTTGAAGGTATAATATCAATAA AAGTAATAACAATAGTAAATAGAAGTAATTAAAATTCGTGTTAAAAAGGG CAGAGAAAAAATAGTCGTTAGGGTGGTGTGTGCTTTTAGGACGCCCGGCG ATGTGCAAAAATATGTCGCATTTTCCTTTAGGAGTTGTGTGCAGTTTTCA GTAGTTTTTTCACAACAGCCTTCCCACTCACGGTTTTCATCGTTTCTGAT ATTTCAAGAAAATGCGCACTTTTGCACGTACACCTTTTTTTCAGCCAACA CCTCAAAAATTCCACGCTACGTTCTCTTTCTCCTAAAATCATAAGTTATT TAGAACATTTTTGTTTTTACTTTCATTCACATATTTCTCCTATTCTTAGT GCGAAAAAAAGTGAAAAATCACTTCCATGATGACTTTTTCTCCTAGTTCT TTAAAAATCGTAAGTTAGTTACAGGAGAACATTTTTTGGTCACTCACATT ATAATTTTTCTCCTATTCTTAGTACCCTAAAAAACATAAATTTTATTCTT AGAAAATTTTAAGTGCACTAAAAAAAGTGAAAATATTTTTCTCGGCCCTA TAATTTTTCTTTTTTTTCTTGTTATCCCCTATCCCAGGGCGAAAGAGCTC GAGAGGTTTAGAACGGATCCGGACTGTATGGTTCTACTTCTAAGTAAGAA GGGAGCCCATGGCCTCGACCTTAGCTTCGTGACACACATGTTCCTCATGG AGCAGATCTGGGACCGTTCCTTGGAAACCCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig194509:53..1037+

>mRNA_H-elongata_contig194509.5406.1 ID=mRNA_H-elongata_contig194509.5406.1|Name=mRNA_H-elongata_contig194509.5406.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig194509:53..1037+ (Himanthalia elongata Himel1 dioecious)
ATCGTGGGGGACAAATTCCTCCGTGAGTTTGGCGGTTACCCGGACATGGG
ATGGCAAGGCAGAGGTGAAAAATGCGTCGCCGAGTTTTGGGGGAAAAACA
GATCGTGGGGGACAAATTCCTCCGTGAGTTTGGCGGTTACCCGGACATGG
GATGGCAAGGCAGAGGTGAAAAATGCGTCGCCGAGTTTTGGGGGAAAAAC
AGGGCGAAAGAGCTCGAGAGGTTTAGAACGGATCCGGACTGTATGGTTCT
ACTTCTAAGTAAGAAGGGAGCCCATGGCCTCGACCTTAGCTTCGTGACAC
ACATGTTCCTCATGGAGCAGATCTGGGACCGTTCCTTGGAAACCCAGGTG
GGCGAAAGAGCTCGAGAGGTTTAGAACGGATCCGGACTGTATGGTTCTAC
TTCTAAGTAAGAAGGGAGCCCATGGCCTCGACCTTAGCTTCGTGACACAC
ATGTTCCTCATGGAGCAGATCTGGGACCGTTCCTTGGAAACCCAGGTG
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