prot_H-elongata_contig19448.5405.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19448.5405.1
Unique Nameprot_H-elongata_contig19448.5405.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length190
Homology
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BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: R7QRG3_CHOCR (Cellulase n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QRG3_CHOCR)

HSP 1 Score: 168 bits (425), Expect = 2.420e-48
Identity = 87/190 (45.79%), Postives = 112/190 (58.95%), Query Frame = 0 
Query:    1 MQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEANWGERCGGQKYVEDCSYLPEYPTTL----REDGVQHEEPSLIELCETAFDWNVRKPGHSPIITEGHQVPCPDALVDVTNFKRDDDDSEETMGTPGLLTSTMDCCAPAGSYSYHTLRNGALSDYIRLVPCTQDGYTR 186
            MQMGGGGFGVWNAC+ P       +D T + + PC  +   DI+V   + +G++ WG RCGG  Y   C  LP++P TL    R  G    EP+L  LC+ +FDW  R    +  IT G +VPCP   V++TN KR DD   E M   G LTSTMDCC+PA +Y   T+ N  L +  R+ PCT+DGYTR
Sbjct:  113 MQMGGGGFGVWNACSGP-------TDKTASDNRPCNTNDYLDIAVRPQFVSGKSEWGRRCGGHIYRTGCRSLPKWPATLEYRPRPAGSSTNEPNLRTLCKRSFDWGARINNGNKQITGGQRVPCPQQFVEITNLKRRDDSRYEQMPR-GTLTSTMDCCSPASAYPSVTMGNKLLPNRNRIRPCTRDGYTR 294
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BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Match: A0A2V3ID67_9FLOR (Cellulase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID67_9FLOR)

HSP 1 Score: 152 bits (385), Expect = 2.840e-42
Identity = 84/199 (42.21%), Postives = 119/199 (59.80%), Query Frame = 0 
Query:    1 MQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYSNGEAN--WGERCGGQKYVEDCSYLPEYPTTLREDG-VQHE-------EPSLIELCETAFDWNVRKPGHSPIITEGHQVPCPDALVDVTNFKRDDDDSEETM---GTPGLLTSTMDCCAPAGSYSYHTLRNGALSDYIRLVPCTQDGYTR 186
            MQMG GGFG++N CA P      T+   G++   C +    D  V+    +G  +  +GERCGGQK  E CSY+PE P+ + + G +Q         EPSL+ +C+ AFDW VRKP  +  IT G ++PCP+ +V++TN +R DD+++ETM   G  G LTSTMDCCAP+     +   N     + R++PC +DGYTR
Sbjct:  111 MQMGAGGFGIFNVCAGP------TNKNNGDA---CARDVVTDNIVAYPQFDGTPHDAFGERCGGQKTREQCSYVPEQPSQIGQPGEIQQRPVFQNVREPSLVTMCQRAFDWQVRKPNGNARITRGERIPCPNEMVEITNLRRTDDNAKETMNFGGGTGELTSTMDCCAPSAIVFGNI--NFPDPKHPRVIPCKRDGYTR 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19448.5405.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QRG3_CHOCR2.420e-4845.79Cellulase n=2 Tax=Chondrus crispus TaxID=2769 RepI... [more]
A0A2V3ID67_9FLOR2.840e-4242.21Cellulase n=1 Tax=Gracilariopsis chorda TaxID=4483... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036908RlpA-like domain superfamilyGENE3D2.40.40.10coord: 1..143
e-value: 6.4E-7
score: 31.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19448contigH-elongata_contig19448:569..6085 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19448.5405.1mRNA_H-elongata_contig19448.5405.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19448 69..7067 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19448.5405.1 ID=prot_H-elongata_contig19448.5405.1|Name=mRNA_H-elongata_contig19448.5405.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
MQMGGGGFGVWNACADPAYHVVSTSDYTGNSDWPCTQSATDDISVSALYS
NGEANWGERCGGQKYVEDCSYLPEYPTTLREDGVQHEEPSLIELCETAFD
WNVRKPGHSPIITEGHQVPCPDALVDVTNFKRDDDDSEETMGTPGLLTST
MDCCAPAGSYSYHTLRNGALSDYIRLVPCTQDGYTRSTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036908RlpA-like_sf