mRNA_H-elongata_contig194470.5404.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194470.5404.1
Unique NamemRNA_H-elongata_contig194470.5404.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig194470.5404.1 vs. uniprot
Match: A0A6H5KBY9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.190e-11
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   22 KVHNAWAHENKDLSGSTAILSTFQDGILVMAGVGDSGG 135
            KVHN WA E  DLSGSTAILSTFQDG+LVMAGVGDS G
Sbjct:  251 KVHNTWADEIGDLSGSTAILSTFQDGVLVMAGVGDSAG 288
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BLAST of mRNA_H-elongata_contig194470.5404.1 vs. uniprot
Match: D8LEW5_ECTSI (GJ12915 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW5_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-11
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   22 KVHNAWAHENKDLSGSTAILSTFQDGILVMAGVGDSGG 135
            KVHN WA E  DLSGSTAILSTFQDG+LVMAGVGDS G
Sbjct:  133 KVHNKWADEIGDLSGSTAILSTFQDGVLVMAGVGDSAG 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194470.5404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBY9_9PHAE2.190e-1184.21PPM-type phosphatase domain-containing protein n=1... [more]
D8LEW5_ECTSI3.000e-1184.21GJ12915 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194470contigH-elongata_contig194470:541..675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930106.1110811-CDS-H-elongata_contig194470:540..6751622930106.1110811-CDS-H-elongata_contig194470:540..675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194470 541..675 +
1691679282.4511693-CDS-H-elongata_contig194470:540..6751691679282.4511693-CDS-H-elongata_contig194470:540..675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194470 541..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194470.5404.1prot_H-elongata_contig194470.5404.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194470 541..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194470.5404.1

>prot_H-elongata_contig194470.5404.1 ID=prot_H-elongata_contig194470.5404.1|Name=mRNA_H-elongata_contig194470.5404.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
MYLAGYWKVHNAWAHENKDLSGSTAILSTFQDGILVMAGVGDSGG
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mRNA from alignment at H-elongata_contig194470:541..675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194470.5404.1 ID=mRNA_H-elongata_contig194470.5404.1|Name=mRNA_H-elongata_contig194470.5404.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig194470:541..675+ (Himanthalia elongata Himel1 dioecious)
ATGTATCTGGCTGGCTACTGGAAGGTGCATAATGCGTGGGCCCACGAGAA
CAAGGATCTGAGCGGGTCGACGGCCATCCTCAGCACCTTTCAGGATGGGA
TCTTGGTCATGGCTGGCGTGGGGGATTCTGGTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig194470:541..675+

>mRNA_H-elongata_contig194470.5404.1 ID=mRNA_H-elongata_contig194470.5404.1|Name=mRNA_H-elongata_contig194470.5404.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig194470:541..675+ (Himanthalia elongata Himel1 dioecious)
ATGTATCTGGCTGGCTACTGGAAGGTGCATAATGCGTGGGCCCACGAGAA
CAAGGATCTGAGCGGGTCGACGGCCATCCTCAGCACCTTTCAGGATGGGA
TCTTGGTCATGGCTGGCGTGGGGGATTCTGGTGGGATGTATCTGGCTGGC
TACTGGAAGGTGCATAATGCGTGGGCCCACGAGAACAAGGATCTGAGCGG
GTCGACGGCCATCCTCAGCACCTTTCAGGATGGGATCTTGGTCATGGCTG
GCGTGGGGGATTCTGGTGGG
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