prot_H-elongata_contig194406.5401.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig194406.5401.1
Unique Nameprot_H-elongata_contig194406.5401.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length163
Homology
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 6.830e-43
Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = 0
Query:    1 MHTRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 163
            + T  L A +  +VFV+  PG+E+ DK     VM+L+KSLYGL QSP NWF T+D  L  IGF PLKSD CVY+Y+ + V V LTLYVD +L    +   ++ +K KL  RF+M+DMG V  +LGM + RD  +G +TISQ+ YT+ +++R+GM  C P  TP
Sbjct:  680 LSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGALTISQEAYTKSILERFGMSECKPTSTP 842          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 9.250e-43
Identity = 79/161 (49.07%), Postives = 108/161 (67.08%), Query Frame = 0
Query:    3 TRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 163
            T  L A +  +VFV+  PG+E+ DK     VM+L+KSLYGL QSP NWF T+D  L  IGF PLKSD CVY+Y+ + V V LTLYVD +L    +   ++ +K KL  RF+M+DMG V  +LGM + RD  +GT+TISQ+ Y++ +++R+GM  C P  TP
Sbjct:  571 TAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTP 731          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.290e-40
Identity = 75/162 (46.30%), Postives = 103/162 (63.58%), Query Frame = 0
Query:    3 TRRLNAVVERDVFVKMAPGYEINDKSEV-PFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 163
            T  L A ++ +VFV+  PG+E+ DK +    VMKL KSLYGL QSP NWF T+D  +  IGF  LKSDPCVY+Y+     + LTLYVD +L        ++ +K KL  RF+M+D+G  S +LGM + RD E  T+TISQ+ Y + +++R+GM    P  TP
Sbjct:   33 TAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTP 194          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.690e-40
Identity = 76/161 (47.20%), Postives = 102/161 (63.35%), Query Frame = 0
Query:    3 TRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 163
            T  L A ++ +VFV+  PG+E+ DK     VMKL KSLYGL QSP NWF T+D  L  IGF  LKSDPCVY+Y+     + LTLYVD +L        ++ +K KL  RF+M+D+G  S +LGM + RD E  T+TISQ+ Y + +++R+GM    P  TP
Sbjct: 1428 TAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTP 1588          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 5.810e-40
Identity = 75/161 (46.58%), Postives = 102/161 (63.35%), Query Frame = 0
Query:    3 TRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 163
            T  L A ++ +VFV+  PG+E+ DK     VMKL KSLYGL QSP NWF T+D  L  IGF  LKSDPCVY+Y+     + LTLYVD +L        ++ +K KL  RF+M+D+G  S +LGM + RD E  T+TISQ+ Y + +++R+G+    P  TP
Sbjct: 1263 TAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTP 1423          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.750e-39
Identity = 76/159 (47.80%), Postives = 107/159 (67.30%), Query Frame = 0
Query:    6 LNAVVERDVFVKMAPGYEI-NDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 163
            LNA+ +RDV+V+ APG    N  +  P V KL +SLYGL QSP  W  T+D +L V G++  +SDPCVY+Y    + VILT+YVD IL     + L+++ K +L  RFEM+DMG V RILG++V RD+E+GT+ ISQ+ Y   +++R+GM+   P  TP
Sbjct:  457 LNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 615          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.010e-38
Identity = 75/159 (47.17%), Postives = 107/159 (67.30%), Query Frame = 0
Query:    6 LNAVVERDVFVKMAPGYEI-NDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 163
            LNA+ +RDV+V+ APG    N  +  P V KL +SLYGL QS   W  T+D +L V+G++  +SDPCVY+Y    + VILT+YVD IL     + L+++ K +L  RFEM+DMG V RILG++V RD+E+GT+ ISQ+ Y   +++R+GM+   P  TP
Sbjct:  301 LNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 459          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KCG4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG4_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.450e-38
Identity = 73/159 (45.91%), Postives = 99/159 (62.26%), Query Frame = 0
Query:    6 LNAVVERDVFVKMAPGYEINDKSEVPF-VMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 163
            LNA  +RDV+V+ APG E  D +     V KL KSLYGL QSP  W   ++  L + G++   SDPCVYI+       IL +YVD IL    +K ++++ K +LM  FEM+DMG V R++G+ V RD+E GT+ ISQ  Y  D++QRYGM+   P  TP
Sbjct:   23 LNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILITEGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTP 181          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.710e-38
Identity = 75/163 (46.01%), Postives = 106/163 (65.03%), Query Frame = 0
Query:    1 MHTRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 163
            + T  L A +  +V V+  PG+E+N K     VM+L+KSLYGL QSP NWF T+D  L  IGF PL+SD CVY+Y+ + V V LTLYVD +L    +  ++  +KNKL  R +M+DMG V  +LGM + RD  +GT+T SQ+ Y++ +++R+GM    P  TP
Sbjct:  868 LSTAFLCADILENVLVEQPPGFEVNGKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTP 1030          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.180e-38
Identity = 75/169 (44.38%), Postives = 106/169 (62.72%), Query Frame = 0
Query:    6 LNAVVERDVFVKMAPGYEI-----------NDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 163
            LNA+ +RDV+V+ APG              N  +  P V KL +SLYGL QSP     T+D +L V G++  +SDPCVY+Y    + VILT+YVD IL     + L+++ K +L  RFEM+DMG V RILG++V RD+E+GT+ ISQ+ Y   +++R+GM+   P  TP
Sbjct:   93 LNALCDRDVYVRPAPGTXXXXXXXXXXSAKNSATGEPMVYKLERSLYGLSQSPALLNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXM1_9PHAE6.830e-4348.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE9.250e-4349.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE1.290e-4046.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J842_9PHAE1.690e-4047.20Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE5.810e-4046.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE92_9PHAE1.750e-3947.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.010e-3847.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCG4_9PHAE1.450e-3845.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL30_9PHAE1.710e-3846.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KG29_9PHAE2.180e-3844.38Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 5..163
e-value: 9.3E-35
score: 120.4
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 28..158
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 102..163
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 80..101
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194406contigH-elongata_contig194406:4..492 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194406.5401.1mRNA_H-elongata_contig194406.5401.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig194406 4..492 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig194406.5401.1 ID=prot_H-elongata_contig194406.5401.1|Name=mRNA_H-elongata_contig194406.5401.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MHTRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNW
FGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTL
LNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQ
RYGMKSCYPAYTP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2