mRNA_H-elongata_contig1938.5378.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1938.5378.1
Unique NamemRNA_H-elongata_contig1938.5378.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1938.5378.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.050e-11
Identity = 31/41 (75.61%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  442 LPHLALLARLYHGVKATSCQAERNFSLLSFLIGTLRASMSP 564
            LPHLAL+ARL+HG+++TSCQAERNFS L+FLIG+LR+SM P
Sbjct:  411 LPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLP 451
[Close]
BLAST of mRNA_H-elongata_contig1938.5378.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.550e-11
Identity = 31/41 (75.61%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  442 LPHLALLARLYHGVKATSCQAERNFSLLSFLIGTLRASMSP 564
            LPHLAL+ARL+HG+++TSCQAERNFS L+FLIG+LR+SM P
Sbjct:  739 LPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLP 779
[Close]
BLAST of mRNA_H-elongata_contig1938.5378.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.210e-7
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:  439 DLPHLALLARLYHGVKATSCQAERNFSLLSFLIGTLRASMSP 564
            ++P+LA +ARLY G++ATSCQAERNFS L+ LIG LR +M P
Sbjct:  554 EMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLP 595
[Close]
BLAST of mRNA_H-elongata_contig1938.5378.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.270e-7
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:  439 DLPHLALLARLYHGVKATSCQAERNFSLLSFLIGTLRASMSP 564
            ++P+LA +ARLY G++ATSCQAERNFS L+ LIG LR +M P
Sbjct:  749 EMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLP 790
[Close]
BLAST of mRNA_H-elongata_contig1938.5378.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.240e-7
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  439 DLPHLALLARLYHGVKATSCQAERNFSLLSFLIGTLRASM 558
            ++P+LA +ARL+ G++ATSCQAERNFS L+ LIGTLR +M
Sbjct:  432 EMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNM 471
[Close]
BLAST of mRNA_H-elongata_contig1938.5378.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.230e-6
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  439 DLPHLALLARLYHGVKATSCQAERNFSLLSFLIGTLRASMSP 564
            ++P+LA +ARLY G++ATSCQAERNFS  S LIG LR  + P
Sbjct:  343 EMPYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILP 384
[Close]
BLAST of mRNA_H-elongata_contig1938.5378.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.780e-6
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  439 DLPHLALLARLYHGVKATSCQAERNFSLLSFLIGTLRASM 558
            ++P+LA +ARL+ G++A+SCQAERNFS LS LIG LR +M
Sbjct:  172 EMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNM 211
[Close]
BLAST of mRNA_H-elongata_contig1938.5378.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 4.820e-6
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  439 DLPHLALLARLYHGVKATSCQAERNFSLLSFLIGTLRASM 558
            ++P+LA +ARL+ G++A+SCQAERNFS LS LIG LR +M
Sbjct:  737 EMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNM 776
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1938.5378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE4.050e-1175.61Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE4.550e-1175.61Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JTB8_9PHAE1.210e-764.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.270e-764.29Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE5.240e-765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE1.230e-661.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJT6_9PHAE2.780e-662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE4.820e-662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1938contigH-elongata_contig1938:5620..8577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size569
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1938.5378.1prot_H-elongata_contig1938.5378.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1938 5620..8545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930103.3815904-CDS-H-elongata_contig1938:5619..57481622930103.3815904-CDS-H-elongata_contig1938:5619..5748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1938 5620..5748 -
1691679281.294661-CDS-H-elongata_contig1938:5619..57481691679281.294661-CDS-H-elongata_contig1938:5619..5748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1938 5620..5748 -
1622930103.397964-CDS-H-elongata_contig1938:7516..76861622930103.397964-CDS-H-elongata_contig1938:7516..7686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1938 7517..7686 -
1691679281.3034613-CDS-H-elongata_contig1938:7516..76861691679281.3034613-CDS-H-elongata_contig1938:7516..7686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1938 7517..7686 -
1622930103.413753-CDS-H-elongata_contig1938:8307..85451622930103.413753-CDS-H-elongata_contig1938:8307..8545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1938 8308..8545 -
1691679281.3123474-CDS-H-elongata_contig1938:8307..85451691679281.3123474-CDS-H-elongata_contig1938:8307..8545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1938 8308..8545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930103.429357-UTR-H-elongata_contig1938:8545..85771622930103.429357-UTR-H-elongata_contig1938:8545..8577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1938 8546..8577 -
1691679281.32154-UTR-H-elongata_contig1938:8545..85771691679281.32154-UTR-H-elongata_contig1938:8545..8577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1938 8546..8577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1938.5378.1

>prot_H-elongata_contig1938.5378.1 ID=prot_H-elongata_contig1938.5378.1|Name=mRNA_H-elongata_contig1938.5378.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MQQLEPPIRKCSVRCSVEISKYGKTQPCGALLAWSGSSRTSTLASHIKRA
HPSVHSELMVAGASSRKSRDERKDAVMITACEKRSQATSPRKGKGKQREH
TNVEVTIQSYMHHKLPNNVREIADRRFVAWSAVNFRSAPSSTPCSSLPRG
QSDQLPSGAQLFFAVVFDWHLACKHESV*
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mRNA from alignment at H-elongata_contig1938:5620..8577-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1938.5378.1 ID=mRNA_H-elongata_contig1938.5378.1|Name=mRNA_H-elongata_contig1938.5378.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2958bp|location=Sequence derived from alignment at H-elongata_contig1938:5620..8577- (Himanthalia elongata Himel1 dioecious)
AAAGGAAGAGGAACTCATGGGTGTGGAAAGTGATGCAGCAACTCGAACCA
CCCATTAGGAAATGCTCCGTGCGGTGTTCAGTAGAGATCTCGAAATATGG
GAAAACACAGCCATGCGGTGCCTTGCTCGCATGGAGTGGTTCATCGAGAA
CGTCAACACTCGCAAGCCACATAAAAAGGGCACACCCCAGCGTCCATTCC
GAACTCATGGTGGCGGGTGCCTCCTCGCGGAAATCAAGGGACGAAAGGAA
GGATGCAGTCATGATCACAGGTGAGGGTTGGGGGTTGTGTCCGTTGCAGC
CTGTTCTCTGTTTTCACGTACAGGTTCGAACAGCAGCAACCCCTGCGCTG
CCATGGAAGTACTGACCGAGCTTTACGCGCGTACAGTAGTTGAAAATATA
TACCCTAAATTCAAAATTGTACTTCGTACCAAATACAAAAAAAACGTTTG
TACCAGTACTTCATACGAAGTACAAAATACCAAACACTATATGCACTGTT
ATTGCTGTGTAGTTGGTTTCTTGTACTAATAATAAATTATGCAGCAGTTG
CTCCACCCGTACCTACTTGTAGCTGATTTGACATTTTGCAACCCACTGAT
AGTTTTAGCTTACTAAATACTTTATGAAAATCGAAATCCAAGCTCTGAAA
AGGGTTAGTGGGATACGTTTCATAGGTCAAAGTGCCACTTGAACAGTACT
ATGTTATGATTCATGTTATAATGTTGTTAACTATAGTAGTATAAATTAAA
CACTAGTGATACAGTACCTCGGGTACGTATATGTTATGTACTTCTATGAA
ATATTACCCAACCATTCATGGTCCCTGTCCTGATATACTCCTGGTCGCAC
GTTGTCTCGTCCTTTTGGCGCGCTCGCTCTATGCCATGAAGCATGTGAGA
AGCGCTCTCAGGCTACAAGCCCGAGAAAGGGCAAAGGAAAGCAACGAGAG
CACACGAACGTAGAGGTCACCATCCAATCGTACATGCATCACAAACTACC
AAACAACGTTCGCGAAATCGCAGACCGTCGCTTCGTAGCCTGGAGTGCCG
TGAATTTTCGACCACAAAACATGATACATGACATCGGCTTCAAGTTTTTC
CTGGGTGTTTGGGATCCTGACTACACCTCTCGAACGATGAGCGCCGAGAG
GTACGACGACATCTTGCTGAATCTGTACGGGGAGGTATGGGAAACATTGC
TCGCGGAAATCCATGAGCACCGAGACTCATGCTTGGTGCTCGGGTACAAG
GAGCCTTTTTTTTCGGGACTGGTACACTTGACAACACTGGCCGGCGCTGA
CTACATAACATTTTCGGCGTCATACATTCCTCCCGGCGAGGTAAACATAA
AGCGCATTGGACTCGCTACAAGGGCATTCCCCGGCTCGCACACCGCGAAC
GATGTGGAATACTGGTTGAAGAAGGTGAGGAACGCGTCCGATCGAGTGTC
AAGTAAAATATAAAATTTAAATCTAGATGGCGATGTGGGTATCGTTTGTG
GATGCTTTCACGTGCTTAAAAGAAAAAGAAAAAAGTGGGATATTCCGCGT
TCACCTCATTGAAGCCACGCTTACTTGGTATGCAACGCACACCGCTTGAA
CATGGTGGTTTACTGGATGCTCGGTTCTGCCGGGACTGGCAAGACATGCA
AGAACCCCGTCTTGGAAAAACAAAGGAAGAGGCTCGCTGTGTGTGTGGGA
AAGTTCAGTCATTCCGCGGTGAACAACAGCGAGCTCAAAACGATTCAAGA
GTTCTCCCCAGTTTTCAGCAAGGTCTACGAGCTCATCAGACGTACTGACA
CCAGGTAACAAGTCTTTAATACCCAGGTGCTGTCCTCCCATAAATGTTCA
CGCGAAACACGAAATATACACTGAAGATATGTTCGAGTTGGTCAGCTTAG
ATTGTGTTCCGCCCTTTCTTCACTCAACGCAGATGGACCACCCAGAGGAA
TATGATGGAACGTCTTCTTCAACTTAAGAATTCTGTCGTCGAGTACTTCA
GGTGAAACTCGAACGACAAAAGACGGCTAACCAGTCATGACCGGAATGTC
ACGAACCAAGTCTGCAGCATCCTCGATCCTATCACCGAAGTGACCATAAA
AATTCAAGGAGCTGAGGACACGTACATCAGCCAGGCGACCTTCCTAATGA
AGGAACTGATGGAGATCGTGAACTCTGAGTGTCTTTAGATCCTGGTTCCA
GACAATCCAGGCATGGATCTCGTACCATACGAGCAAGTAAACAAATCTGA
GCTTTTTCCGGAGGTTGAAACGGCGGTCAAGGTGTATAGAGAAATAATGG
AGGAAAAGGACCTGGGTAGGGCTTTGAACCCAACTGAGCGCATCAGCGTA
TTTCTCGATCCGAGAAGGAAAATTATGTCCGAGGACAATTGCATTGGCGG
TGGCAATGCGCTTCAGACGATGGCAATTTCGGACGTTGAAGAGCTCGGAC
ATCACTTCGTCGGGAACGTCGCGCAAAAATCTAGCAGGACACCAGCCCCT
GCACCAGCTCCAGCTCTTGCGCCAGCTCCAGCCTCTGCGCCAGCTCCCAG
TTTGGCGACTCCAGCCATACCTTTGCCACGGATGCCTTCAGTAATGGAGC
AAAGACGCCTGGCCCGATTGGCTGCAGCTGGACATGGAAGTAGTTCACAT
GGGGCACAGGGGGGGGTACAAACAATAACACACCACGTCGCCCTTCGACA
GGAACTAACTAACTCTCGAGGGAAAAACGTCGAGGCAGACGTGTGCAGTT
TTTCGCTGCCAGGTATTTGGCTCCGCAAGAGCGAGTCGACGCTTGCTCAG
GGCACGGACAAGCTTGTGGCGCCACCGGATCTGCCCCATCTAGCACTCCT
TGCTCGTCTTTACCACGGGGTCAAAGCGACCAGTTGCCAAGCGGAGCGCA
ACTTTTCTTTGCTGTCGTTTTTGATTGGCACCTTGCGTGCAAGCATGAGT
CCGTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig1938:5620..8577-

>mRNA_H-elongata_contig1938.5378.1 ID=mRNA_H-elongata_contig1938.5378.1|Name=mRNA_H-elongata_contig1938.5378.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig1938:5620..8577- (Himanthalia elongata Himel1 dioecious)
ATGCAGCAACTCGAACCACCCATTAGGAAATGCTCCGTGCGGTGTTCAGT
AGAGATCTCGAAATATGGGAAAACACAGCCATGCGGTGCCTTGCTCGCAT
GGAGTGGTTCATCGAGAACGTCAACACTCGCAAGCCACATAAAAAGGGCA
CACCCCAGCGTCCATTCCGAACTCATGGTGGCGGGTGCCTCCTCGCGGAA
ATCAAGGGACGAAAGGAAGGATGCAGTCATGATCACAGATGCAGCAACTC
GAACCACCCATTAGGAAATGCTCCGTGCGGTGTTCAGTAGAGATCTCGAA
ATATGGGAAAACACAGCCATGCGGTGCCTTGCTCGCATGGAGTGGTTCAT
CGAGAACGTCAACACTCGCAAGCCACATAAAAAGGGCACACCCCAGCGTC
CATTCCGAACTCATGGTGGCGGGTGCCTCCTCGCGGAAATCAAGGGACGA
AAGGAAGGATGCAGTCATGATCACAGCATGTGAGAAGCGCTCTCAGGCTA
CAAGCCCGAGAAAGGGCAAAGGAAAGCAACGAGAGCACACGAACGTAGAG
GTCACCATCCAATCGTACATGCATCACAAACTACCAAACAACGTTCGCGA
AATCGCAGACCGTCGCTTCGTAGCCTGGAGTGCCGTGAATTTTCGACATG
TGAGAAGCGCTCTCAGGCTACAAGCCCGAGAAAGGGCAAAGGAAAGCAAC
GAGAGCACACGAACGTAGAGGTCACCATCCAATCGTACATGCATCACAAA
CTACCAAACAACGTTCGCGAAATCGCAGACCGTCGCTTCGTAGCCTGGAG
TGCCGTGAATTTTCGATCTGCCCCATCTAGCACTCCTTGCTCGTCTTTAC
CACGGGGTCAAAGCGACCAGTTGCCAAGCGGAGCGCAACTTTTCTTTGCT
GTCGTTTTTGATTGGCACCTTGCGTGCAAGCATGAGTCCGTTTAATCTGC
CCCATCTAGCACTCCTTGCTCGTCTTTACCACGGGGTCAAAGCGACCAGT
TGCCAAGCGGAGCGCAACTTTTCTTTGCTGTCGTTTTTGATTGGCACCTT
GCGTGCAAGCATGAGTCCGTTTAA
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