mRNA_H-elongata_contig19358.5372.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19358.5372.1
Unique NamemRNA_H-elongata_contig19358.5372.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19358.5372.1 vs. uniprot
Match: D8LLD7_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD7_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 9.270e-29
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 MKVSQDMQLSWLEQWHSMDLDGSNL-DYPAFIGGCGLDDNMWSRRIFNLLDQNSSGIVMAFRMCSRRGITCELENAVLDEKDIRLFVEDR 267
            M VS DM+LSWL++W SMD DGSNL DYP F+  C L DNMWS R+FNLLD+N   + +AFRMCSRRG T + + +VLDEKDIRLFVE+R
Sbjct:    1 MNVSPDMRLSWLQRWQSMDEDGSNLLDYPEFLQACELRDNMWSWRMFNLLDKNF--VEVAFRMCSRRGSTWDPDKSVLDEKDIRLFVEER 88
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BLAST of mRNA_H-elongata_contig19358.5372.1 vs. uniprot
Match: A0A6H5JXQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.940e-16
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 MKVSQDMQLSWLEQWHSMDLDGSNL-DYPAFIGGCGLDDNMWSRRIFNLLDQNSSGIVMAF 180
            MKVS DM+LSWL++W SMD DGSNL DY  F+  CGL DN+WS R+FNLLD+N  G++ A+
Sbjct:    1 MKVSSDMRLSWLQRWQSMDEDGSNLLDYTEFLQACGLRDNIWSWRMFNLLDKNFVGVMEAY 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19358.5372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLD7_ECTSI9.270e-2965.56EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JXQ3_9PHAE2.940e-1662.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19358contigH-elongata_contig19358:474..1033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930102.836066-CDS-H-elongata_contig19358:473..5711622930102.836066-CDS-H-elongata_contig19358:473..571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19358 474..571 -
1691679281.0241308-CDS-H-elongata_contig19358:473..5711691679281.0241308-CDS-H-elongata_contig19358:473..571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19358 474..571 -
1622930102.8525803-CDS-H-elongata_contig19358:861..10331622930102.8525803-CDS-H-elongata_contig19358:861..1033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19358 862..1033 -
1691679281.0333526-CDS-H-elongata_contig19358:861..10331691679281.0333526-CDS-H-elongata_contig19358:861..1033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19358 862..1033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19358.5372.1prot_H-elongata_contig19358.5372.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19358 474..1033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19358.5372.1

>prot_H-elongata_contig19358.5372.1 ID=prot_H-elongata_contig19358.5372.1|Name=mRNA_H-elongata_contig19358.5372.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MKVSQDMQLSWLEQWHSMDLDGSNLDYPAFIGGCGLDDNMWSRRIFNLLD
QNSSGIVMAFRMCSRRGITCELENAVLDEKDIRLFVEDRF
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mRNA from alignment at H-elongata_contig19358:474..1033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19358.5372.1 ID=mRNA_H-elongata_contig19358.5372.1|Name=mRNA_H-elongata_contig19358.5372.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=560bp|location=Sequence derived from alignment at H-elongata_contig19358:474..1033- (Himanthalia elongata Himel1 dioecious)
ATGAAGGTTTCTCAAGACATGCAACTGTCATGGCTCGAACAATGGCATTC
AATGGACCTGGACGGATCCAACCTTGATTATCCAGCATTCATTGGGGGAT
GTGGCCTCGATGACAACATGTGGAGCAGGCGGATATTCAATCTTCTAGAC
CAAAATTCTTCAGGTATCGTGAGTGCTGAACTGTGCCATTACGCTCTAAT
TTTGTATCATGTGATACTGGCCCCATGACCAATGTCACTTGAACTATGTG
CTCCTACATTTTTATGATACCGCACTACTCGTGTGCTGTATTCGATTTAG
GTTCGAGGTGCTTAGCTCTCATACATTTAACCCCAGCGAGATAGTTCATT
GACGTATGCGTTTATTTTCCTGAACATATATAAACAGGGCACGTGGACTT
CTTCAACTTCTTTCGTTCACTGCCAAAACTCCTGGTGTTTGACCGTTCGA
ATGCCATTGAAGTGGCCTTCCGAATGTGCAGTAGAAGGGGGATAACCTGT
GAACTCGAGAACGCCGTCTTGGATGAAAAAGACATACGCCTTTTCGTTGA
AGACAGGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig19358:474..1033-

>mRNA_H-elongata_contig19358.5372.1 ID=mRNA_H-elongata_contig19358.5372.1|Name=mRNA_H-elongata_contig19358.5372.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig19358:474..1033- (Himanthalia elongata Himel1 dioecious)
ATGAAGGTTTCTCAAGACATGCAACTGTCATGGCTCGAACAATGGCATTC
AATGGACCTGGACGGATCCAACCTTGATTATCCAGCATTCATTGGGGGAT
GTGGCCTCGATGACAACATGTGGAGCAGGCGGATATTCAATCTTCTAGAC
CAAAATTCTTCAGGTATCGTGAATGAAGGTTTCTCAAGACATGCAACTGT
CATGGCTCGAACAATGGCATTCAATGGACCTGGACGGATCCAACCTTGAT
TATCCAGCATTCATTGGGGGATGTGGCCTCGATGACAACATGTGGAGCAG
GCGGATATTCAATCTTCTAGACCAAAATTCTTCAGGTATCGTGATGGCCT
TCCGAATGTGCAGTAGAAGGGGGATAACCTGTGAACTCGAGAACGCCGTC
TTGGATGAAAAAGACATACGCCTTTTCGTTGAAGACAGGTTTTGGCCTTC
CGAATGTGCAGTAGAAGGGGGATAACCTGTGAACTCGAGAACGCCGTCTT
GGATGAAAAAGACATACGCCTTTTCGTTGAAGACAGGTTT
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