mRNA_H-elongata_contig193401.5367.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193401.5367.1
Unique NamemRNA_H-elongata_contig193401.5367.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193401.5367.1 vs. uniprot
Match: A0A6H5LEF6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEF6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.950e-12
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 QRNKGKCYYSQKERNKETYIFFTRQ--EQDMRERVQKKRALALERARKEEMVLRLHEDKTIRQEV 189
            Q+ KGK +  ++E  +   I + RQ  E+DMRERVQKKRALALERARKEEMVLRLHED+ IRQE+
Sbjct:   76 QKQKGKLHIIEQEFKQAERIEYWRQKEERDMRERVQKKRALALERARKEEMVLRLHEDRNIRQEI 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193401.5367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LEF6_9PHAE4.950e-1264.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193401contigH-elongata_contig193401:205..393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue3.6e-09
Seed eggNOG ortholog2880.D7G9B4
EggNOG OGs2CXA4@1,2S4K9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_004360.1
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930102.265012-CDS-H-elongata_contig193401:204..3931622930102.265012-CDS-H-elongata_contig193401:204..393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193401 205..393 -
1691679280.783132-CDS-H-elongata_contig193401:204..3931691679280.783132-CDS-H-elongata_contig193401:204..393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193401 205..393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193401.5367.1prot_H-elongata_contig193401.5367.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193401 205..393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193401.5367.1

>prot_H-elongata_contig193401.5367.1 ID=prot_H-elongata_contig193401.5367.1|Name=mRNA_H-elongata_contig193401.5367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
QRNKGKCYYSQKERNKETYIFFTRQEQDMRERVQKKRALALERARKEEMV
LRLHEDKTIRQEV
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mRNA from alignment at H-elongata_contig193401:205..393-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193401.5367.1 ID=mRNA_H-elongata_contig193401.5367.1|Name=mRNA_H-elongata_contig193401.5367.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig193401:205..393- (Himanthalia elongata Himel1 dioecious)
CAAAGAAACAAAGGAAAATGTTATTATTCCCAGAAAGAGAGAAACAAAGA
AACATATATATTTTTTACACGTCAGGAGCAAGATATGCGAGAACGCGTAC
AGAAGAAACGCGCCCTTGCCCTGGAGCGCGCAAGGAAAGAAGAAATGGTG
TTGCGCCTCCACGAGGACAAGACGATTCGCCAAGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig193401:205..393-

>mRNA_H-elongata_contig193401.5367.1 ID=mRNA_H-elongata_contig193401.5367.1|Name=mRNA_H-elongata_contig193401.5367.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig193401:205..393- (Himanthalia elongata Himel1 dioecious)
CAAAGAAACAAAGGAAAATGTTATTATTCCCAGAAAGAGAGAAACAAAGA
AACATATATATTTTTTACACGTCAGGAGCAAGATATGCGAGAACGCGTAC
AGAAGAAACGCGCCCTTGCCCTGGAGCGCGCAAGGAAAGAAGAAATGGTG
TTGCGCCTCCACGAGGACAAGACGATTCGCCAAGAGGTGCAAAGAAACAA
AGGAAAATGTTATTATTCCCAGAAAGAGAGAAACAAAGAAACATATATAT
TTTTTACACGTCAGGAGCAAGATATGCGAGAACGCGTACAGAAGAAACGC
GCCCTTGCCCTGGAGCGCGCAAGGAAAGAAGAAATGGTGTTGCGCCTCCA
CGAGGACAAGACGATTCGCCAAGAGGTG
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