mRNA_H-elongata_contig193228.5356.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193228.5356.1
Unique NamemRNA_H-elongata_contig193228.5356.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: D7FIE7_ECTSI (DEP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE7_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.230e-28
Identity = 53/73 (72.60%), Postives = 65/73 (89.04%), Query Frame = 1
Query:    1 GEQESWTKLASRLFPTTAGAETFFQSNLDAVVSRDADMISTLVDIGVSPFDEHNAELLDNVHPAKWKDAEPDG 219
            G+++SWT LASRLFPTT+G E+  Q++L+AVVSRDADMI+TLV+IGVSP D++N ELLDNVHPA W DAEPDG
Sbjct:  116 GKKDSWTALASRLFPTTSGQESR-QADLEAVVSRDADMINTLVEIGVSPIDQYNTELLDNVHPANWVDAEPDG 187          
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: A0A836CF07_9STRA (Mercuric reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF07_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.350e-10
Identity = 34/73 (46.58%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    1 GEQESWTKLASRLFPTTAGAETFFQSNLDAVVSRDADMISTLVDIGVSPFDEHNAELLDNVHPAKWKDAEPDG 219
            G   SW  L   LFP  AG     Q++L  +V+RDA   +T + +GVSP DE+N  LLDNVHP  W D   DG
Sbjct:   99 GTAVSWRHLTQSLFP--AGDGDTMQTDLSGIVNRDASFEATELAVGVSPLDEYNTTLLDNVHPPAWIDPPGDG 169          
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: UPI001E28D820 (FAD-containing oxidoreductase n=1 Tax=Desulfosediminicola ganghwensis TaxID=2569540 RepID=UPI001E28D820)

HSP 1 Score: 55.8 bits (133), Expect = 2.450e-7
Identity = 33/72 (45.83%), Postives = 39/72 (54.17%), Query Frame = 1
Query:    7 QESWTKLASRLFPTTAG--AETFFQSNLDAVVSRDADMIST-LVDIGVSPFDEHNAELLDNVHPAKWKDAEP 213
            QESW K A  L    AG   E   Q  L       A M    L ++G+SP DE+NA+LLDNVHP  W+D EP
Sbjct:  108 QESWVKWADFLSSGGAGRRGEKVLQPTLPEPDVNLASMDQVCLEEVGISPLDEYNAQLLDNVHPRAWRDPEP 179          
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: A0A353NF73_9DELT (FAD-containing oxidoreductase n=2 Tax=Bacteria TaxID=2 RepID=A0A353NF73_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 3.000e-6
Identity = 32/75 (42.67%), Postives = 39/75 (52.00%), Query Frame = 1
Query:    1 GEQESWTKLASRLFPTTAGAETFFQSNLDAVVSRDADMIST----LVDIGVSPFDEHNAELLDNVHPAKWKDAEP 213
            G    W    + +  +T GA+   Q  L      DAD+ +     L  IGVSP DEHNA LLDNVHP +W D EP
Sbjct:  115 GSSVKWADFLT-ILTSTNGADGSLQPTLP---EPDADLANMDQIDLEAIGVSPLDEHNAMLLDNVHPKRWLDPEP 185          
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: A0A7Y3AFA7_9DELT (FAD-containing oxidoreductase n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7Y3AFA7_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 2.690e-5
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 1
Query:  124 LVDIGVSPFDEHNAELLDNVHPAKWKDAEP 213
            L  IG+ P D+HNA+LLDNVHP KW D EP
Sbjct:  156 LAQIGLYPLDQHNAQLLDNVHPKKWTDPEP 185          
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: A0A525D6D9_9DELT (FAD-containing oxidoreductase (Fragment) n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A525D6D9_9DELT)

HSP 1 Score: 49.7 bits (117), Expect = 3.660e-5
Identity = 31/75 (41.33%), Postives = 39/75 (52.00%), Query Frame = 1
Query:    1 GEQESWTKLASRLFPTTAGAETFFQSNLDAVVSRDADMISTLVD----IGVSPFDEHNAELLDNVHPAKWKDAEP 213
            GEQ S  + A  L   T+      +S    +   DAD+     D    +GV+P DEHNA LLDNVHP KW D +P
Sbjct:   50 GEQGSLVRWADFLGKITSPPGD--ESLQPGIPGPDADLGDMAQDDLAAVGVTPLDEHNATLLDNVHPKKWLDPDP 122          
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: A0A7S4E0S5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E0S5_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 3.680e-5
Identity = 27/70 (38.57%), Postives = 38/70 (54.29%), Query Frame = 1
Query:   13 SWTKLASRLFPTTAGAETFFQSNLDAVV--SRDADMISTLVDIGVSPFDEHNAELLDNVHPAKWKDAEPD 216
            +WTKL   +   T+G  +   S + A+     D D    L  + +SP D+ N ELL+NVHP KWKD + D
Sbjct:  119 TWTKLFQGIGGNTSGEASHQPSMVSALALGEIDPDARDKLQKLEISPLDKWNTELLENVHPLKWKDPKGD 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FIE7_ECTSI1.230e-2872.60DEP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CF07_9STRA1.350e-1046.58Mercuric reductase n=1 Tax=Tribonema minus TaxID=3... [more]
UPI001E28D8202.450e-745.83FAD-containing oxidoreductase n=1 Tax=Desulfosedim... [more]
A0A353NF73_9DELT3.000e-642.67FAD-containing oxidoreductase n=2 Tax=Bacteria Tax... [more]
A0A7Y3AFA7_9DELT2.690e-566.67FAD-containing oxidoreductase n=1 Tax=Desulfobacte... [more]
A0A525D6D9_9DELT3.660e-541.33FAD-containing oxidoreductase (Fragment) n=1 Tax=D... [more]
A0A7S4E0S5_9EUKA3.680e-538.57Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193228contigH-elongata_contig193228:129..347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue3.3e-22
Seed eggNOG ortholog2880.D7FIE7
KEGG koko:K04351
KEGG Pathwayko04015,ko04024,ko04072,ko04261,ko04670,ko04911,map04015,map04024,map04072,map04261,map04670,map04911
EggNOG free text desc.positive regulation of potassium:proton exchanging ATPase activity
EggNOG OGsKOG2378@2759,KOG3629@1
Ec32 ortholog descriptionDEP domain
Ec32 orthologEc-28_000010.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930101.2252765-CDS-H-elongata_contig193228:128..3471622930101.2252765-CDS-H-elongata_contig193228:128..347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193228 129..347 -
1691679280.3863196-CDS-H-elongata_contig193228:128..3471691679280.3863196-CDS-H-elongata_contig193228:128..347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193228 129..347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193228.5356.1prot_H-elongata_contig193228.5356.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193228 129..347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193228.5356.1

>prot_H-elongata_contig193228.5356.1 ID=prot_H-elongata_contig193228.5356.1|Name=mRNA_H-elongata_contig193228.5356.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
GEQESWTKLASRLFPTTAGAETFFQSNLDAVVSRDADMISTLVDIGVSPF
DEHNAELLDNVHPAKWKDAEPDG
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mRNA from alignment at H-elongata_contig193228:129..347-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193228.5356.1 ID=mRNA_H-elongata_contig193228.5356.1|Name=mRNA_H-elongata_contig193228.5356.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig193228:129..347- (Himanthalia elongata Himel1 dioecious)
GGCGAACAGGAATCCTGGACGAAGCTCGCCTCGCGGCTGTTTCCTACCAC CGCCGGGGCCGAGACGTTCTTCCAAAGCAACCTCGATGCGGTGGTCTCGC GCGACGCTGACATGATCAGCACCCTGGTGGACATCGGGGTATCGCCCTTC GACGAGCACAACGCCGAGCTCCTGGATAACGTGCACCCCGCCAAGTGGAA GGACGCCGAGCCTGATGGG
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Coding sequence (CDS) from alignment at H-elongata_contig193228:129..347-

>mRNA_H-elongata_contig193228.5356.1 ID=mRNA_H-elongata_contig193228.5356.1|Name=mRNA_H-elongata_contig193228.5356.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig193228:129..347- (Himanthalia elongata Himel1 dioecious)
GGCGAACAGGAATCCTGGACGAAGCTCGCCTCGCGGCTGTTTCCTACCAC
CGCCGGGGCCGAGACGTTCTTCCAAAGCAACCTCGATGCGGTGGTCTCGC
GCGACGCTGACATGATCAGCACCCTGGTGGACATCGGGGTATCGCCCTTC
GACGAGCACAACGCCGAGCTCCTGGATAACGTGCACCCCGCCAAGTGGAA
GGACGCCGAGCCTGATGGGGGCGAACAGGAATCCTGGACGAAGCTCGCCT
CGCGGCTGTTTCCTACCACCGCCGGGGCCGAGACGTTCTTCCAAAGCAAC
CTCGATGCGGTGGTCTCGCGCGACGCTGACATGATCAGCACCCTGGTGGA
CATCGGGGTATCGCCCTTCGACGAGCACAACGCCGAGCTCCTGGATAACG
TGCACCCCGCCAAGTGGAAGGACGCCGAGCCTGATGGG
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