mRNA_H-elongata_contig193215.5355.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193215.5355.1
Unique NamemRNA_H-elongata_contig193215.5355.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193215.5355.1 vs. uniprot
Match: D8LCK1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK1_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 9.790e-25
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:   31 QAALEDALDSTTLGDLWFERGELEEAKYEHQRALRIRTAKLRPGHPDIAESLESLGNVAIR 213
            + AL DALDST LGDLWFERGEL+EA+YEH RALRIR+A+L PGHPDIAESLESLGNVAIR
Sbjct:  120 KTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIR 180
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BLAST of mRNA_H-elongata_contig193215.5355.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 8.660e-23
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:   31 QAALEDALDSTTLGDLWFERGELEEAKYEHQRALRIRTAKLRPGHPDIAESLESLGNVAIRE 216
            + AL DALDST  GD WFERGEL+EA+YEH RALRIR+A+L PGHPDIAESLESLGNVAIRE
Sbjct: 1565 KTALADALDSTIRGDQWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRE 1626
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193215.5355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCK1_ECTSI9.790e-2583.61Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5JQC7_9PHAE8.660e-2380.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193215contigH-elongata_contig193215:418..633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog2880.D8LCK1
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-03_002600.1
Exons1
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930101.1828284-CDS-H-elongata_contig193215:417..6331622930101.1828284-CDS-H-elongata_contig193215:417..633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193215 418..633 -
1691679280.3733163-CDS-H-elongata_contig193215:417..6331691679280.3733163-CDS-H-elongata_contig193215:417..633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193215 418..633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193215.5355.1prot_H-elongata_contig193215.5355.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193215 418..633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193215.5355.1

>prot_H-elongata_contig193215.5355.1 ID=prot_H-elongata_contig193215.5355.1|Name=mRNA_H-elongata_contig193215.5355.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MPPSPTRLLEQAALEDALDSTTLGDLWFERGELEEAKYEHQRALRIRTAK
LRPGHPDIAESLESLGNVAIRE
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mRNA from alignment at H-elongata_contig193215:418..633-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193215.5355.1 ID=mRNA_H-elongata_contig193215.5355.1|Name=mRNA_H-elongata_contig193215.5355.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig193215:418..633- (Himanthalia elongata Himel1 dioecious)
ATGCCCCCCTCCCCCACCCGCCTCCTGGAGCAGGCCGCCTTAGAAGATGC
CCTCGATAGTACCACCCTCGGAGATCTCTGGTTCGAGCGGGGGGAGCTGG
AGGAAGCCAAATACGAGCACCAGCGAGCGCTCAGAATCCGAACAGCCAAG
CTGCGACCCGGACACCCGGACATCGCGGAAAGCCTCGAGAGTCTTGGCAA
TGTCGCCATCCGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig193215:418..633-

>mRNA_H-elongata_contig193215.5355.1 ID=mRNA_H-elongata_contig193215.5355.1|Name=mRNA_H-elongata_contig193215.5355.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig193215:418..633- (Himanthalia elongata Himel1 dioecious)
ATGCCCCCCTCCCCCACCCGCCTCCTGGAGCAGGCCGCCTTAGAAGATGC
CCTCGATAGTACCACCCTCGGAGATCTCTGGTTCGAGCGGGGGGAGCTGG
AGGAAGCCAAATACGAGCACCAGCGAGCGCTCAGAATCCGAACAGCCAAG
CTGCGACCCGGACACCCGGACATCGCGGAAAGCCTCGAGAGTCTTGGCAA
TGTCGCCATCCGGGAGATGCCCCCCTCCCCCACCCGCCTCCTGGAGCAGG
CCGCCTTAGAAGATGCCCTCGATAGTACCACCCTCGGAGATCTCTGGTTC
GAGCGGGGGGAGCTGGAGGAAGCCAAATACGAGCACCAGCGAGCGCTCAG
AATCCGAACAGCCAAGCTGCGACCCGGACACCCGGACATCGCGGAAAGCC
TCGAGAGTCTTGGCAATGTCGCCATCCGGGAG
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