mRNA_H-elongata_contig10650.531.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10650.531.1
Unique NamemRNA_H-elongata_contig10650.531.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10650.531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10650contigH-elongata_contig10650:3176..4242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size397
Cds size201
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10650.531.1prot_H-elongata_contig10650.531.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10650 3370..4242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.5915856-UTR-H-elongata_contig10650:3175..33691622929595.5915856-UTR-H-elongata_contig10650:3175..3369Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10650 3176..3369 -
1691679084.076455-UTR-H-elongata_contig10650:3175..33691691679084.076455-UTR-H-elongata_contig10650:3175..3369Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10650 3176..3369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.6050124-CDS-H-elongata_contig10650:3369..33831622929595.6050124-CDS-H-elongata_contig10650:3369..3383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10650 3370..3383 -
1691679084.0889766-CDS-H-elongata_contig10650:3369..33831691679084.0889766-CDS-H-elongata_contig10650:3369..3383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10650 3370..3383 -
1622929595.6193314-CDS-H-elongata_contig10650:4055..42421622929595.6193314-CDS-H-elongata_contig10650:4055..4242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10650 4056..4242 -
1691679084.099987-CDS-H-elongata_contig10650:4055..42421691679084.099987-CDS-H-elongata_contig10650:4055..4242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10650 4056..4242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10650.531.1

>prot_H-elongata_contig10650.531.1 ID=prot_H-elongata_contig10650.531.1|Name=mRNA_H-elongata_contig10650.531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
GGGGRDRGSSTHCYSGECGGADNDGRIRHIGNGMESSTELEIKGCGAVAA
FETPAPRSVGPRGRRD*
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mRNA from alignment at H-elongata_contig10650:3176..4242-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10650.531.1 ID=mRNA_H-elongata_contig10650.531.1|Name=mRNA_H-elongata_contig10650.531.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1067bp|location=Sequence derived from alignment at H-elongata_contig10650:3176..4242- (Himanthalia elongata Himel1 dioecious)
GGAGGGGGTGGGAGGGATCGAGGCTCGAGCACCCACTGCTACAGTGGCGA
ATGCGGCGGCGCTGATAACGACGGAAGAATCCGACATATTGGAAACGGGA
TGGAGTCCTCAACCGAGCTGGAGATAAAGGGGTGTGGGGCCGTGGCGGCA
TTCGAAACGCCAGCGCCACGGAGTGTGGGGCCCAGAGGTAGGCCACCGGG
AACAGGAAGGAAGTATGTAACGGTAGTCCAGCGTGATTGCGTAACCAACG
CGAGCAGGATAGGCCAATCCAACGTCTTCAGGGATAGCTCCCCATAGGGG
AGGGGGGGATTCGCAAACCCGCGAGGCGCTCCCGTACGTGTCATGCAGGT
TGGCGCGGTATTATAACGCAAATTGTTAAAAAGGGAAAAGAGAGAACGCG
CCCTGATTATAGTCTCGGACCTACATTTTTTCGCAGGCTTGCATAACGTG
AACAATGGAACCCTGGGGGTTGTCATGCTCATCCTAAGCTACTGTTCATG
ACCGACAAACTCGTTGGTCAGCGACTCTCAGCGCTTGAAGGTCTCCTTGA
TGCGATTCTCGCTCCTCGACTGGGTTGCCGTTGTGGCGCTGGTGTGAACG
CTGTAGTGGAGGCGCGGATGGCGGCAGACATGAAGGCGAAGTCCGCGGTC
GTGAAGTTCACGAAGGAGGACTGCTCTTTCGATGTCAGCGTCGTTGCCTG
CTTCCCCGCGTTGCCAGGGGATTACCACAAAGTACGCGGTATATATAACC
ACTGAGCTTTCCTCGCATTACCTGTTCTCACTCCCTCACCCCCCGTGTGC
TTTATGCTCAGATTAGTGTTCTGAAGATTGTGTAATGCTAACCATTCTCG
TCTGTCCAGGACGAAGGGATTAAACAGCGGTATCACACCAAGCGGCTGCT
AGAAAGGGCTGACGCGATGGCTCGCGAGCAAGAAGCGACCAAGAGAACTC
ATAAGGGATTGTTATCTGGAGGCGGCAATGGTCCGGGATCTGGAGACGGC
AAGGCCTCGGGAGCAGAAGTCCTTTAACCCTTTAGGAACTGGATTTCAGT
TTTTGTATTGAACTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig10650:3176..4242-

>mRNA_H-elongata_contig10650.531.1 ID=mRNA_H-elongata_contig10650.531.1|Name=mRNA_H-elongata_contig10650.531.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig10650:3176..4242- (Himanthalia elongata Himel1 dioecious)
GGAGGGGGTGGGAGGGATCGAGGCTCGAGCACCCACTGCTACAGTGGCGA
ATGCGGCGGCGCTGATAACGACGGAAGAATCCGACATATTGGAAACGGGA
TGGAGTCCTCAACCGAGCTGGAGATAAAGGGGTGTGGGGCCGTGGCGGCA
TTCGAAACGCCAGCGCCACGGAGTGTGGGGCCCAGAGGGAGGGGGTGGGA
GGGATCGAGGCTCGAGCACCCACTGCTACAGTGGCGAATGCGGCGGCGCT
GATAACGACGGAAGAATCCGACATATTGGAAACGGGATGGAGTCCTCAAC
CGAGCTGGAGATAAAGGGGTGTGGGGCCGTGGCGGCATTCGAAACGCCAG
CGCCACGGAGTGTGGGGCCCAGAGGACGAAGGGATTAAGACGAAGGGATT
AA
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