prot_H-elongata_contig106471.528.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig106471.528.1
Unique Nameprot_H-elongata_contig106471.528.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length226
Homology
BLAST of mRNA_H-elongata_contig106471.528.1 vs. uniprot
Match: A0A177TP70_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TP70_9BASI)

HSP 1 Score: 57.8 bits (138), Expect = 4.580e-6
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 0
Query:   49 DSGATEHITQDPAGLEDYTPAPAGDRVESAGGTLLPMAGYGHLRLLMDQGNGNFTDSMRQLTLKHVAHVPN-LGQHNLLSTKRLTQ 133
            D+G++ HI  DP+ L DY  A     +E A G L+P+AGYG+LR+    G         ++ LK VAH P+ +G  NL+  KRLT+
Sbjct:  754 DTGSSRHIVADPSSLTDYRNAAPETGIECANGGLMPVAGYGNLRVTTQAG--------LKIELKDVAHCPSAIG--NLIGGKRLTK 829          
BLAST of mRNA_H-elongata_contig106471.528.1 vs. uniprot
Match: A0A540NPQ2_MALBA (gag_pre-integrs domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NPQ2_MALBA)

HSP 1 Score: 54.7 bits (130), Expect = 2.630e-5
Identity = 47/170 (27.65%), Postives = 73/170 (42.94%), Query Frame = 0
Query:   46 WANDSGATEHITQDPAGLEDYTPAPAGDRVESAGGTLLPMAGYGHLRLLMDQGNGNFTDSMRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAALIRPRREGMPLFFRPLRPENGLLEIKVRRHVAAKSLLKPPTATALAATQRGPRDIMKFHQVLGHPAEQI 215
            W  DSGA+ H+T   A L++       ++V    G  LP         ++  G+ +   S     LKHV HVP L Q NL+S  +        M +YP    ++    G  LF  P+  ++G             S     ++ AL A  + P+ +  +HQ LGHP+ +I
Sbjct:   25 WIVDSGASSHMTNSYANLQNPEAYTGPEQVYIGDGKGLP---------ILHSGSSSLHTSTNSFALKHVLHVPALKQ-NLISANQFLLDNSCFMHLYPFHFTVKDLSSGRMLFKGPV--QHGFYPFH-------SSFSPANSSQALTAYVKAPQHL--WHQRLGHPSVKI 173          
BLAST of mRNA_H-elongata_contig106471.528.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH)

HSP 1 Score: 52.4 bits (124), Expect = 3.210e-5
Identity = 34/100 (34.00%), Postives = 51/100 (51.00%), Query Frame = 0
Query:   44 EFWANDSGATEHITQDPAGLEDYTPAPAGDRVESAGGTLLPMAGYGHLRLLMDQGNGNFTDSMRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYP 143
            + W  DSGAT+H+T +P+ +   TP      V +A G   P+ G G + L             + +TL  V  VP+L  HNLLS K++T+ F   + +YP
Sbjct:   21 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTLT------------KSITLDTVLLVPSLS-HNLLSVKQITKQFYCCVILYP 106          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106471.528.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A177TP70_9BASI4.580e-640.70Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A540NPQ2_MALBA2.630e-527.65gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A2P6P2V5_ROSCH3.210e-534.00Uncharacterized protein n=1 Tax=Rosa chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106471contigH-elongata_contig106471:194..871 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106471.528.1mRNA_H-elongata_contig106471.528.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig106471 194..871 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig106471.528.1 ID=prot_H-elongata_contig106471.528.1|Name=mRNA_H-elongata_contig106471.528.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
ELCELYWHSRRRWPQTRRVCWKFARQPRGWIXXXXRPKERRGSEFWANDS
GATEHITQDPAGLEDYTPAPAGDRVESAGGTLLPMAGYGHLRLLMDQGNG
NFTDSMRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAALIRP
RREGMPLFFRPLRPENGLLEIKVRRHVAAKSLLKPPTATALAATQRGPRD
IMKFHQVLGHPAEQITRNTAHMVGM*
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