mRNA_H-elongata_contig19063.5261.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19063.5261.1
Unique NamemRNA_H-elongata_contig19063.5261.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19063.5261.1 vs. uniprot
Match: A0A5D3DSP6_CUCME (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DSP6_CUCME)

HSP 1 Score: 51.2 bits (121), Expect = 1.830e-5
Identity = 31/81 (38.27%), Postives = 40/81 (49.38%), Query Frame = 1 
Query:    4 PWILDSGATGHFTHDGSRLACYAECS--RVLRGAGDKAFPIVGTGSLTLCVRSGEGLVRVKLNDVAHAPGLSHRLLSLRRI 240
            PWILDSGAT HFT        Y  C+    ++ A     PI G G + L     +G     L +V H P LS+ LLS+ +I
Sbjct:  261 PWILDSGATDHFTSFSEHFVTYTSCAGNEKIQIADGSLAPIAGKGQIVLF----DGF---SLQNVLHVPKLSYNLLSISKI 334
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19063.5261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5D3DSP6_CUCME1.830e-538.27Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19063contigH-elongata_contig19063:6539..6799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930090.1318114-CDS-H-elongata_contig19063:6538..67991622930090.1318114-CDS-H-elongata_contig19063:6538..6799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19063 6539..6799 +
1691679276.4743948-CDS-H-elongata_contig19063:6538..67991691679276.4743948-CDS-H-elongata_contig19063:6538..6799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19063 6539..6799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19063.5261.1prot_H-elongata_contig19063.5261.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19063 6539..6799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19063.5261.1

>prot_H-elongata_contig19063.5261.1 ID=prot_H-elongata_contig19063.5261.1|Name=mRNA_H-elongata_contig19063.5261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
EPWILDSGATGHFTHDGSRLACYAECSRVLRGAGDKAFPIVGTGSLTLCV
RSGEGLVRVKLNDVAHAPGLSHRLLSLRRIADAGHTY
back to top

mRNA from alignment at H-elongata_contig19063:6539..6799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19063.5261.1 ID=mRNA_H-elongata_contig19063.5261.1|Name=mRNA_H-elongata_contig19063.5261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig19063:6539..6799+ (Himanthalia elongata Himel1 dioecious)
GAACCCTGGATACTGGATTCGGGGGCTACAGGTCATTTTACGCATGACGG
CAGCAGACTTGCCTGCTACGCGGAGTGCAGCAGAGTGTTGCGTGGCGCGG
GAGACAAGGCTTTCCCGATCGTAGGTACTGGCTCTTTGACTTTGTGCGTC
CGATCTGGGGAGGGGCTAGTCCGCGTCAAGCTAAACGACGTTGCGCACGC
GCCAGGCCTCTCCCACCGCCTGTTGTCCTTGCGACGGATTGCCGATGCTG
GCCACACGTAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19063:6539..6799+

>mRNA_H-elongata_contig19063.5261.1 ID=mRNA_H-elongata_contig19063.5261.1|Name=mRNA_H-elongata_contig19063.5261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig19063:6539..6799+ (Himanthalia elongata Himel1 dioecious)
GAACCCTGGATACTGGATTCGGGGGCTACAGGTCATTTTACGCATGACGG
CAGCAGACTTGCCTGCTACGCGGAGTGCAGCAGAGTGTTGCGTGGCGCGG
GAGACAAGGCTTTCCCGATCGTAGGTACTGGCTCTTTGACTTTGTGCGTC
CGATCTGGGGAGGGGCTAGTCCGCGTCAAGCTAAACGACGTTGCGCACGC
GCCAGGCCTCTCCCACCGCCTGTTGTCCTTGCGACGGATTGCCGATGCTG
GCCACACGTACGAACCCTGGATACTGGATTCGGGGGCTACAGGTCATTTT
ACGCATGACGGCAGCAGACTTGCCTGCTACGCGGAGTGCAGCAGAGTGTT
GCGTGGCGCGGGAGACAAGGCTTTCCCGATCGTAGGTACTGGCTCTTTGA
CTTTGTGCGTCCGATCTGGGGAGGGGCTAGTCCGCGTCAAGCTAAACGAC
GTTGCGCACGCGCCAGGCCTCTCCCACCGCCTGTTGTCCTTGCGACGGAT
TGCCGATGCTGGCCACACGTAC
back to top