mRNA_H-elongata_contig19035.5250.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19035.5250.1
Unique NamemRNA_H-elongata_contig19035.5250.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19035.5250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19035contigH-elongata_contig19035:5730..6258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size529
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19035.5250.1prot_H-elongata_contig19035.5250.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19035 5797..6153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.1543365-UTR-H-elongata_contig19035:5729..57961622930088.1543365-UTR-H-elongata_contig19035:5729..5796Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19035 5730..5796 +
1691679275.9905849-UTR-H-elongata_contig19035:5729..57961691679275.9905849-UTR-H-elongata_contig19035:5729..5796Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19035 5730..5796 +
1622930088.193877-UTR-H-elongata_contig19035:6153..62581622930088.193877-UTR-H-elongata_contig19035:6153..6258Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19035 6154..6258 +
1691679276.0088704-UTR-H-elongata_contig19035:6153..62581691679276.0088704-UTR-H-elongata_contig19035:6153..6258Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19035 6154..6258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.1735358-CDS-H-elongata_contig19035:5796..61531622930088.1735358-CDS-H-elongata_contig19035:5796..6153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19035 5797..6153 +
1691679275.9999516-CDS-H-elongata_contig19035:5796..61531691679275.9999516-CDS-H-elongata_contig19035:5796..6153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19035 5797..6153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19035.5250.1

>prot_H-elongata_contig19035.5250.1 ID=prot_H-elongata_contig19035.5250.1|Name=mRNA_H-elongata_contig19035.5250.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MVECSPCRYLLSRYTVAECSLPPVPELYVLIPRPRRQLLLGPLGCRLLIA
LASFWVLLTTAPRSRPLTASRSRALFSFYSRHLPASQSRALPPTDLGPSH
SPVPEPFWLPLHAPKPPR*
back to top

mRNA from alignment at H-elongata_contig19035:5730..6258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19035.5250.1 ID=mRNA_H-elongata_contig19035.5250.1|Name=mRNA_H-elongata_contig19035.5250.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=529bp|location=Sequence derived from alignment at H-elongata_contig19035:5730..6258+ (Himanthalia elongata Himel1 dioecious)
AGGCAATACGCCAATTAGGGTAGTAAGCCCTTAAATTGGCGGGCGGGCCT
CAGAACCCTCATCCGGAATGGTGGAATGTTCTCCTTGCAGGTATCTCCTT
TCTCGCTACACTGTTGCTGAGTGCTCGCTGCCTCCTGTTCCTGAGCTCTA
CGTCTTGATCCCGAGACCTCGCCGGCAACTGCTCCTTGGCCCTCTTGGCT
GTCGCCTTCTCATAGCTCTCGCCTCCTTCTGGGTCCTCTTGACTACCGCT
CCCCGCTCTCGACCCCTTACCGCCTCCCGTTCTCGGGCCCTTTTCTCCTT
CTACTCTCGACACTTACCTGCCTCTCAATCTCGCGCCCTTCCGCCAACCG
ATCTCGGGCCTTCGCATTCTCCTGTTCCTGAACCTTTTTGGCTACCGCTT
CATGCTCCTAAGCCACCACGTTAGTCCGTTCAATCGGCCACTCCTCGAAC
TCCAGCCGCTCGGCGTGATCCCGCTTTTCTTCCTCTTTACCCTGGACGAA
TGACGATGCTTAACATTATTAGTGAGGAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19035:5730..6258+

>mRNA_H-elongata_contig19035.5250.1 ID=mRNA_H-elongata_contig19035.5250.1|Name=mRNA_H-elongata_contig19035.5250.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig19035:5730..6258+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGAATGTTCTCCTTGCAGGTATCTCCTTTCTCGCTACACTGTTGC
TGAGTGCTCGCTGCCTCCTGTTCCTGAGCTCTACGTCTTGATCCCGAGAC
CTCGCCGGCAACTGCTCCTTGGCCCTCTTGGCTGTCGCCTTCTCATAGCT
CTCGCCTCCTTCTGGGTCCTCTTGACTACCGCTCCCCGCTCTCGACCCCT
TACCGCCTCCCGTTCTCGGGCCCTTTTCTCCTTCTACTCTCGACACTTAC
CTGCCTCTCAATCTCGCGCCCTTCCGCCAACCGATCTCGGGCCTTCGCAT
TCTCCTGTTCCTGAACCTTTTTGGCTACCGCTTCATGCTCCTAAGCCACC
ACGTTAGATGGTGGAATGTTCTCCTTGCAGGTATCTCCTTTCTCGCTACA
CTGTTGCTGAGTGCTCGCTGCCTCCTGTTCCTGAGCTCTACGTCTTGATC
CCGAGACCTCGCCGGCAACTGCTCCTTGGCCCTCTTGGCTGTCGCCTTCT
CATAGCTCTCGCCTCCTTCTGGGTCCTCTTGACTACCGCTCCCCGCTCTC
GACCCCTTACCGCCTCCCGTTCTCGGGCCCTTTTCTCCTTCTACTCTCGA
CACTTACCTGCCTCTCAATCTCGCGCCCTTCCGCCAACCGATCTCGGGCC
TTCGCATTCTCCTGTTCCTGAACCTTTTTGGCTACCGCTTCATGCTCCTA
AGCCACCACGTTAG
back to top