mRNA_H-elongata_contig18959.5215.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18959.5215.1
Unique NamemRNA_H-elongata_contig18959.5215.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18959.5215.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.970e-12
Identity = 34/53 (64.15%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:  145 DAQGMDEIR--RFYRVVFETRQLGLVLVKQDGVAVVEDVTAYNGVGGRSAGPF 297
            + +G ++I+  RFY VVFET QLG+VL++Q+GVAVVE+V++YNGVGGR+AGPF
Sbjct: 3378 EEEGGEQIQDGRFYEVVFETAQLGIVLLRQNGVAVVEEVSSYNGVGGRAAGPF 3430
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18959.5215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYL2_9PHAE1.970e-1264.15FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18959contigH-elongata_contig18959:1272..4167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size298
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18959.5215.1prot_H-elongata_contig18959.5215.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18959 1272..4167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.5134883-CDS-H-elongata_contig18959:1271..13401622930083.5134883-CDS-H-elongata_contig18959:1271..1340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18959 1272..1340 -
1691679274.3917632-CDS-H-elongata_contig18959:1271..13401691679274.3917632-CDS-H-elongata_contig18959:1271..1340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18959 1272..1340 -
1622930083.5291648-CDS-H-elongata_contig18959:2219..22881622930083.5291648-CDS-H-elongata_contig18959:2219..2288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18959 2220..2288 -
1691679274.3997655-CDS-H-elongata_contig18959:2219..22881691679274.3997655-CDS-H-elongata_contig18959:2219..2288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18959 2220..2288 -
1622930083.5439677-CDS-H-elongata_contig18959:4008..41671622930083.5439677-CDS-H-elongata_contig18959:4008..4167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18959 4009..4167 -
1691679274.430451-CDS-H-elongata_contig18959:4008..41671691679274.430451-CDS-H-elongata_contig18959:4008..4167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18959 4009..4167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18959.5215.1

>prot_H-elongata_contig18959.5215.1 ID=prot_H-elongata_contig18959.5215.1|Name=mRNA_H-elongata_contig18959.5215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MGREASTGTRLQPRGEREALESAASMDEPSLGSGEDEGGSSRSTKEGLDA
QGMDEIRRFYRVVFETRQLGLVLVKQDGVAVVEDVTAYNGVGGRSAGPF
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mRNA from alignment at H-elongata_contig18959:1272..4167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18959.5215.1 ID=mRNA_H-elongata_contig18959.5215.1|Name=mRNA_H-elongata_contig18959.5215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2896bp|location=Sequence derived from alignment at H-elongata_contig18959:1272..4167- (Himanthalia elongata Himel1 dioecious)
ATGGGTCGAGAGGCATCGACCGGCACCCGCCTGCAGCCGCGTGGGGAGCG
GGAGGCACTAGAGTCTGCAGCGTCGATGGACGAGCCTTCCTTGGGAAGCG
GTGAAGACGAAGGAGGAAGCTCGAGATCTACTAAGGAGGGGTTGGATGCC
CAAGGAATGGTTAGTAGGTCCCTGTTGTGTCTCTACTGCACGAACGCCGT
CCTTCCATTGGAAACCCTTGAGAAAGGCGGTGTATAGGGGGGGGGGTAGG
CCTCCGACAGGACAGGTAGCCATCGGGACTGTTAAAGAATGTGGGCAGGG
CATTGTTGTACAAATAATTGTTGTTGCTCTTGAGTCATGCTTTTCAGGAT
GTCTTCCTTGCCACTCAACAACTGAGGTGATACCGTTAACTCGTTCAGCC
GTCGACCTATTAAATGTCGCTCGCCCGAGTGAACCCAAGGAAATCTACGA
GTTGTCAAGGTAGGACCACGTGTTTTCTGTCTTACTTACGTCATGCCCTA
CTTGGTTGATGTTATTGTTGTTGGTGCTCTCCCATTTTTGTTATTTTGGT
TGATGCTATGAATGCCGATTGGCCCTTAATTTCCAACCCTCGCTGCATGT
AATTCGCTGAAAAAAACTAAAATAACCATAAAGCAAAACATATATAAAAT
AAAAAATAAAAATCCCCTTTAAAAAACGGAAAACTAATTAAAAAAAACAC
ATTTACTCGTAAAGAGGGGGGGGGGACAAGATTTGTGCGAATTTTACCGT
AGTAAAGGGTAACGTAGGGCAAAATGAGGCAAAGGGTCGTGGAAGAAGCT
GGTTGGAATTGAAGAGACCGCTACACGATGAAGTATTTCGGAAGACTAGC
GCTGTTTCCCTCGTATTGCGTTTCCCTCCGCTCTAACCCTCGAAGAGGGA
GTCCGTGCAGTGTGTGCCCTGCGAGCTAGCTCATCGGCCTCGGTCGAAGA
GCCTTATCTTGACTCTCTCTCCCCAAAGACGTGAAACGCATAACATTCTA
TTGGATGCCTACTGAACAAAGGATTATTATAATCCCTGCAGCAACCATAT
ACTTAAAGAGAGAGTAGTCCGCCAGGGGTATTATTGGGGACATTATTGAG
GCTTTTATTGAGGGTATTATTGATATATTAATGCGTTCGCGGGGAGATAT
CAAAGCCCATTTGCGGTACTTGGAGGACAGTATAGTATAGTATAGTACAT
TATAGTATAGTATAGTACAGTATAGCATAGCATAGTATAGTATAGTATAG
TATAGTATAGTACAGTAGAGTATAGTATAGTATAGTATAGTAAAGTATAG
TACAGTATAGTACAGTATAGTACAGTATAATATAGTATAGTATAGCATAG
CATAGTTTTAAAAACCCTTTAAACTCATTCCAACCCTCCTAACATCCACG
CCTTCTTAGCACCATGAGAGGTGCAGTCCAGAGGACCAGCTATCGCCAGG
TTCGAATGTGGACAGTACTAACCTTGATTACAAAATCTTAGTACATTACA
TTATCGTATAGTGTATATAGTATAGTCGTACCCGGTGTGGCATAACTCAT
AGAGCATGTCATGACATGTCCGTCCGGTTCGGCGTAGCAAACGCCAGGGT
GATGACCAAAAGCTGGTGTCATGCTTATGAAACACAGCCTGGCTTCCGAA
AACCCGGCATATCTCTCCACAGTCCCGTCCAGGTATTATCGTTGTTGGGA
TGTGTGATATTGATGATGTGTCATTGTTGCTGTTCTCCCAGTATTAATTA
ATTTAGGCTGATTGAGGCTACCCCCAAACTAAGTTTTGGTACATTTGGTC
GTGGTCGATGGTGCTGCCGTTAGGACATCACATCAACCTTGTCCCTCCTC
TGCCCCTCTGCTGCAATCGTTGTTCGCAGGACGAAATCCGCCGATTTTAC
CGGGTGGTGTTTGAGACTCGTCAGCTGGGCCTGGTCCTCGTCAAGCAGGT
ACTTGCGGTGTTTCGTAGGCAAGTATGTGTGATCGGCGACCTAGGAGGGG
TGGTCGACCGGAGCACGCGCCCTGACAAACTGCGTAGCACAGATAATGTC
CCTGTCTTCCCGTCCCCCGTCCCCCCCATCTTCCACTTAAGGATTTTAGT
TGCAGGGGTCAGTCTGAGTAAACCCCTGCTCATACTTTCGTTAAGTGGTT
CTTAACTTACTCACGGGACGGGGTCGAACATATAACACGAGACTGTCAGT
TTCTTATCTCGGATGTTTGGCGATTATGTTCGCAAGCAATTCAGTTAATC
GCAACGGTTCCGTTGTGTGCATATCATTGATATTAAAAATAAATTTTGAT
AGATGCGGTGATTAAATTATTGAATTACCAGGAGAGTGAAAATCTTTTGC
TTGAGATATCAACGGATTTATGAACGGATTTTATCAGTCAACCCATACAG
ATATACATGGTATTTGTTTCGGGCGGGGGGGGGGAGAAAGATGGTTTTAG
AAAACCAAAAACTATTCTCCACATCTTGAAAATATTATGTTGCTTTTGTA
AGAAGAGGTAGCGTCGGAAATATCTCGCGAATACAGTGCAATTATGTCAC
GAAAATAATACATTATTTGTAAAAAAATAATATAAACTAATGCAATAGTC
GTAGCTAGTTTTTGTAGTCTGCACACCTTGGCCGCTTTGGGTAATCCGAG
AGAAGAGGTGAAGGAAAGGAGGGGAAGGAGGGGACGGAGCATTTCCTTTC
AGCCGGGGGGAGGGGGGACGTTCTCCTGATGCTGGTCGAACACACGGCCG
CGTCAAGATCGGTCGAACACCCTGTTTGTCTTTATTTCGGTCCGCATCGG
ACTCAACTTGGGGCTTCCTTATTCCAGGATGGCGTTGCTGTGGTAGAGGA
CGTGACAGCCTACAATGGGGTCGGGGGTCGATCGGCTGGCCCGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig18959:1272..4167-

>mRNA_H-elongata_contig18959.5215.1 ID=mRNA_H-elongata_contig18959.5215.1|Name=mRNA_H-elongata_contig18959.5215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig18959:1272..4167- (Himanthalia elongata Himel1 dioecious)
ATGGGTCGAGAGGCATCGACCGGCACCCGCCTGCAGCCGCGTGGGGAGCG
GGAGGCACTAGAGTCTGCAGCGTCGATGGACGAGCCTTCCTTGGGAAGCG
GTGAAGACGAAGGAGGAAGCTCGAGATCTACTAAGGAGGGGTTGGATGCC
CAAGGAATGATGGGTCGAGAGGCATCGACCGGCACCCGCCTGCAGCCGCG
TGGGGAGCGGGAGGCACTAGAGTCTGCAGCGTCGATGGACGAGCCTTCCT
TGGGAAGCGGTGAAGACGAAGGAGGAAGCTCGAGATCTACTAAGGAGGGG
TTGGATGCCCAAGGAATGGACGAAATCCGCCGATTTTACCGGGTGGTGTT
TGAGACTCGTCAGCTGGGCCTGGTCCTCGTCAAGCAGGACGAAATCCGCC
GATTTTACCGGGTGGTGTTTGAGACTCGTCAGCTGGGCCTGGTCCTCGTC
AAGCAGGATGGCGTTGCTGTGGTAGAGGACGTGACAGCCTACAATGGGGT
CGGGGGTCGATCGGCTGGCCCGTTTGATGGCGTTGCTGTGGTAGAGGACG
TGACAGCCTACAATGGGGTCGGGGGTCGATCGGCTGGCCCGTTT
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