mRNA_H-elongata_contig1895.5210.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1895.5210.1
Unique NamemRNA_H-elongata_contig1895.5210.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Match: D8LR67_ECTSI (Uroporphyrinogen-III C-methyltransferase, putative chloroplast n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR67_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 9.630e-158
Identity = 240/288 (83.33%), Postives = 259/288 (89.93%), Query Frame = 1 
Query:  334 TDDMDGWNPRDGIETGTVSLVGGGPGDPDLLTIAGLRELQSADLVIADRLISEEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFGRGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQRSFPRDCPIAIVENASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVLHGSKQGLISDAANGMFFGVDAARVAKAAKTAADKIDKINKG 1197
            TD  DGW PRDG+E GT SLVG GPGDPDLLT+AGLRELQSADLVIADRL+S+EILGLV+GELRVARKYPGCAEQAQREIYRWMREGLS+GKHVVRLKIGDP+IFGRGGEEVL MR+LGVEP VVPGISSVFSAPLLGGVPVTHRGVATQV LGTGYGQDYARPDICDYHPQKTAVFLMAIGRLE LC DLV+RS+P D P+AI+ENASTPRQRVI GTVDTIS +ARGL VKAPATIVVGEVV VLHG +QGL+SDAA GMF GVD  RVA AA+  A+K + +  G
Sbjct:  103 TDHTDGWEPRDGVEIGTCSLVGSGPGDPDLLTVAGLRELQSADLVIADRLVSKEILGLVEGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLVMRELGVEPKVVPGISSVFSAPLLGGVPVTHRGVATQVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCADLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMFAGVDKERVASAAERVAEKKEGLFSG 390
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BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Match: A0A835ZDP8_9STRA (Tetrapyrrole methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP8_9STRA)

HSP 1 Score: 344 bits (883), Expect = 5.880e-105
Identity = 166/245 (67.76%), Postives = 207/245 (84.49%), Query Frame = 1 
Query:  376 TGTVSLVGGGPGDPDLLTIAGLRELQSADLVIADRLISEEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFGRGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQRSFPRDCPIAIVENASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVLHGSKQGLISDAA 1110
            +GT++LVG GPGDPDLLT+  +R L +ADLVIADRL+S+EIL LV+G+LRVARK+PGCAE+AQ+EIYRW++EG+ +GK+VVRLKIGDP++FGRGGEE+LE RK G+E  VVPGISSVF APLL G+PVTHRGVA QV LGTGY +DY  PDI DYHP++TAVFLMA+GRL+ LC DL++R +P   P+AIVE+ASTP QR +  TV+TI+ +A    V+APATI+VG+VV+VLHG  QGLI D A
Sbjct:  299 SGTLTLVGAGPGDPDLLTVKAVRVLATADLVIADRLVSKEILDLVEGDLRVARKHPGCAEEAQQEIYRWVKEGVDAGKNVVRLKIGDPFVFGRGGEEILEARKWGLECSVVPGISSVFGAPLLAGIPVTHRGVANQVVLGTGYAKDYGTPDISDYHPEQTAVFLMAVGRLKELCADLMRRGYPAATPVAIVESASTPTQRTVKATVETITAVATEHAVRAPATIIVGDVVRVLHGDAQGLIQDVA 543
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BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Match: A0A6T5QQD2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QQD2_HETAK)

HSP 1 Score: 305 bits (782), Expect = 3.730e-93
Identity = 143/243 (58.85%), Postives = 186/243 (76.54%), Query Frame = 1 
Query:  373 ETGTVSLVGGGPGDPDLLTIAGLRELQSADLVIADRLISEEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFGRGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQRSFPRDCPIAIVENASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVLHGSKQGLIS 1101
            + G +SLVG GPGDP+LLT+A +R LQ ADLV++DRL+S+EIL  VK EL++ARK PGCAE+AQ EIY W +EGL++GK VVRLKIGDP IFGRGGEE+L  R+ G +P +V G+SS FSAPLLG +P+THRG A Q+ +GTGYGQ+  +  I  YHP++TAVFLMA+GRL  LC DL    +P DCP+AI+E ASTP QR++ G + +I  +A    VK P+ +V G VV  LHG+K+GL++
Sbjct:   84 KAGHISLVGAGPGDPELLTVAAIRRLQGADLVVSDRLVSQEILDFVKCELKIARKRPGCAEEAQEEIYDWCKEGLAAGKRVVRLKIGDPLIFGRGGEEILRFREWGYKPELVAGVSSAFSAPLLGNIPLTHRGFANQLVIGTGYGQNCTKTGITPYHPERTAVFLMAVGRLPTLCADLAAEGYPADCPVAIIEKASTPEQRLVLGKISSIVALAEEHRVKPPSIVVFGAVVAALHGAKEGLVA 326
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BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Match: A0A7S2LDV1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDV1_9STRA)

HSP 1 Score: 294 bits (753), Expect = 3.960e-89
Identity = 143/249 (57.43%), Postives = 187/249 (75.10%), Query Frame = 1 
Query:  379 GTVSLVGGGPGDPDLLTIAGLRELQSAD-LVIADRLISEEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFGRGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQ-RSFPRDCPIAIVENASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVLHGSKQGLISDAANGM 1119
            G VS+VG GPGDPDLLTIA  + ++  D L+IADRL+S EI+ L KGE+R ARK PGCA++AQ+EIY W REGL  GKHVVRLKIGDP++FGRGGEEVLE RK+GVEP V+PG+S+ F+APLLGG+PVTHRG++ QV + TGYG++   PD+  YH ++T VFLMA+GRL  LC++L    ++PRD P+A+VE A  P QR + G ++TI+      ++K P+TIVVGEVV VL     G + +   G+
Sbjct:   72 GRVSMVGSGPGDPDLLTIAAAKVIEDPDALIIADRLVSPEIIALCKGEVRTARKLPGCADKAQQEIYDWCREGLMDGKHVVRLKIGDPFVFGRGGEEVLEFRKMGVEPKVIPGVSAAFAAPLLGGIPVTHRGISNQVVMCTGYGRNGTSPDLIQYHKEQTVVFLMAVGRLRELCDNLCNLANYPRDTPVAVVEKAGCPEQRTVVGDLNTIADYCIRYDIKPPSTIVVGEVVDVLLNEGVGSMEERVQGL 320
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BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Match: A0A1E7FE26_9STRA (Uroporphyrin-III C-m n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE26_9STRA)

HSP 1 Score: 288 bits (737), Expect = 2.100e-86
Identity = 145/261 (55.56%), Postives = 192/261 (73.56%), Query Frame = 1 
Query:  358 PRDGIETG-TVSLVGGGPGDPDLLTIAGLRELQSAD-LVIADRLISEEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFGRGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQRS-FPRDCPIAIVENASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVLHGSK------QGLISDAAN 1113
            P+D +  G  ++LVG GPGDPDLLT+   + LQ  D L+I+DRL+S+EIL +VKGE+++ARK PGCAE AQ EIY W  EGL++GKHV+RLKIGDP++FGRGGEEV++ RK GVE  VVPG+SS FSAPLL  +PVTHRGV+ QV + TGYG++   PD+  YH ++T VFLMA+GRL  LC+ LV  + +P+D P+ I+E A  P QR + G + TI+ IA   N++AP+TIVVG+VV VL          QGLI +A++
Sbjct:   99 PKDALGNGGRITLVGSGPGDPDLLTVKAYKLLQDPDALIISDRLVSQEILDIVKGEIKIARKMPGCAEFAQEEIYFWTHEGLAAGKHVIRLKIGDPFVFGRGGEEVIQFRKFGVESKVVPGVSSAFSAPLLANIPVTHRGVSNQVVMCTGYGREGTSPDLIQYHEEQTIVFLMAVGRLRQLCDRLVNLAGYPKDTPVGIIERAGCPNQRTVVGNMQTIADIAEKYNIQAPSTIVVGKVVDVLLEKDDDGMVMQGLIQNASD 359
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BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Match: A0A7S4AWV6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWV6_9STRA)

HSP 1 Score: 286 bits (732), Expect = 9.640e-86
Identity = 142/242 (58.68%), Postives = 184/242 (76.03%), Query Frame = 1 
Query:  358 PRDGIETG-TVSLVGGGPGDPDLLTIAGLRELQSAD-LVIADRLISEEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFGRGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQRS-FPRDCPIAIVENASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVL 1074
            P + +E G  ++LVG GPGDPDLLT+   + LQ  D LVIADRL+S+EIL +V GE++VARK PGCAE AQ EIY W  +GLS+GKHV+RLKIGDPY+FGRGGEEVL+ RK GVE  VVPG+S+ FSAPLL  +PVTHRG + QV + TGYG++ + PD+  YH ++T VFLMA+GRL  LCE L++ + +P+D P+ I+E A  P QR + G + TI+ IA   N++AP+TIVVG+VV VL
Sbjct:   96 PLEQLENGGRITLVGSGPGDPDLLTVKAYKLLQDPDALVIADRLVSQEILDMVGGEIKVARKLPGCAENAQAEIYWWTHQGLSAGKHVIRLKIGDPYVFGRGGEEVLQFRKFGVESKVVPGVSAAFSAPLLANIPVTHRGYSNQVVMCTGYGREGSSPDLIQYHEEQTIVFLMAVGRLRVLCERLIKLAGYPKDTPVGIIERAGCPNQRTVIGNMQTIADIAEKHNIQAPSTIVVGKVVNVL 337
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BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Match: A0A7S0HSB0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HSB0_9CRYP)

HSP 1 Score: 286 bits (733), Expect = 1.070e-85
Identity = 133/232 (57.33%), Postives = 177/232 (76.29%), Query Frame = 1 
Query:  379 GTVSLVGGGPGDPDLLTIAGLRELQSADLVIADRLISEEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFGRGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQRSFPRDCPIAIVENASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVL 1074
            G+++LVG GPGDPDLLT+   + +Q+AD+VIADRL+S+EIL L+K EL++A+KYPGCA  AQ EIYRW  EGL+ GK++VRLKIGDP++FGRGGEEVLE+RK GVE  V+PGISS  + PL  G+PVTHRGVA +V   TG G++ + PD+  YHP++T VFLMA+GRLE L +DL +  +P+  P+ I+E A+TP +R I GT+  I  +A    ++ P+ IVVGE V VL
Sbjct:  105 GSITLVGAGPGDPDLLTLGAFKAIQAADVVIADRLVSKEILSLIKCELKIAQKYPGCAHDAQNEIYRWCAEGLAEGKNIVRLKIGDPFVFGRGGEEVLELRKFGVEAKVIPGISSALAGPLAAGIPVTHRGVANRVVFCTGMGKEESVPDVPAYHPEQTCVFLMAVGRLEALTDDLTREGYPQSTPVGIIERATTPHERTIRGTISDIVNLAHEEQIRPPSVIVVGEAVNVL 336
[Close]
BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Match: L1J6F0_GUITC (TP_methylase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J6F0_GUITC)

HSP 1 Score: 283 bits (723), Expect = 1.720e-85
Identity = 137/237 (57.81%), Postives = 178/237 (75.11%), Query Frame = 1 
Query:  379 GTVSLVGGGPGDPDLLTIAGLRELQSADLVIADRLISEEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFGRGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQRSFPRDCPIAIVENASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVLHGSKQ 1089
            G+++LVG GPGDPDLLT+  L+ + +ADLVIADRL+S+EIL L+K EL++A+KYPGCA  AQ EIYRW  EGL  GK +VRLKIGDP++FGRGGEEVLE+RK GVE  V+PGISS  + PL  G+PVTHRGVA +V   TG G++ + PDI  YHP++T VFLMA+GRL+ L +DL +  +P   P+ I+E A+TP +R I GT++ I  +A    ++ P+ IVVGE V VL  SKQ
Sbjct:   16 GSITLVGAGPGDPDLLTLGALKAIHAADLVIADRLVSKEILALIKSELKIAQKYPGCAHDAQNEIYRWCAEGLVEGKKIVRLKIGDPFVFGRGGEEVLELRKFGVEAKVIPGISSALAGPLAAGIPVTHRGVANRVVFCTGMGKEESIPDIPAYHPEQTCVFLMAVGRLKALTDDLTKGGYPSTTPVGIIERATTPHERTIRGTIEDIVILASEEKIRPPSVIVVGEAVNVL--SKQ 250
[Close]
BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Match: B8C0W2_THAPS (TP_methylase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0W2_THAPS)

HSP 1 Score: 278 bits (712), Expect = 1.310e-84
Identity = 134/233 (57.51%), Postives = 180/233 (77.25%), Query Frame = 1 
Query:  382 TVSLVGGGPGDPDLLTIAGLRELQS-ADLVIADRLISEEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFGRGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQRS-FPRDCPIAIVENASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVL 1074
            T++L+G GPG PDLLT++  R L   ++LVI DRL+S+EI+ L++GE+R+A K+PGC E AQREIY W  +GL  G+ VVRLKIGDP++FGRGGEEVLE RK GVEP V+PG+S+ FSAPLL  +PVTHRG++ QV + TGYG++   P++  YH ++T VFLMA+GRL  LCE+LV+ + +P + P+ IVE A  P QRV+ GT++TI+ +A   +VK P+TIVVGEVV VL
Sbjct:    1 TITLLGSGPGSPDLLTLSAYRILSDPSNLVIVDRLVSDEIVELIQGEVRIANKHPGCQESAQREIYEWCVQGLRDGRKVVRLKIGDPFVFGRGGEEVLEFRKFGVEPTVIPGVSAAFSAPLLANIPVTHRGISNQVVMCTGYGRNNTSPELIQYHKEQTVVFLMAVGRLRTLCENLVKMAGYPIETPVGIVERAGCPDQRVVVGTMETIADLAEEYDVKPPSTIVVGEVVNVL 233
[Close]
BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Match: A0A7S4NG18_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NG18_GUITH)

HSP 1 Score: 283 bits (723), Expect = 2.460e-84
Identity = 137/237 (57.81%), Postives = 178/237 (75.11%), Query Frame = 1 
Query:  379 GTVSLVGGGPGDPDLLTIAGLRELQSADLVIADRLISEEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFGRGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQRSFPRDCPIAIVENASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVLHGSKQ 1089
            G+++LVG GPGDPDLLT+  L+ + +ADLVIADRL+S+EIL L+K EL++A+KYPGCA  AQ EIYRW  EGL  GK +VRLKIGDP++FGRGGEEVLE+RK GVE  V+PGISS  + PL  G+PVTHRGVA +V   TG G++ + PDI  YHP++T VFLMA+GRL+ L +DL +  +P   P+ I+E A+TP +R I GT++ I  +A    ++ P+ IVVGE V VL  SKQ
Sbjct:  103 GSITLVGAGPGDPDLLTLGALKAIHAADLVIADRLVSKEILALIKSELKIAQKYPGCAHDAQNEIYRWCAEGLVEGKKIVRLKIGDPFVFGRGGEEVLELRKFGVEAKVIPGISSALAGPLAAGIPVTHRGVANRVVFCTGMGKEESIPDIPAYHPEQTCVFLMAVGRLKALTDDLTKGGYPSTTPVGIIERATTPHERTIRGTIEDIVILASEEKIRPPSVIVVGEAVNVL--SKQ 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1895.5210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR67_ECTSI9.630e-15883.33Uroporphyrinogen-III C-methyltransferase, putative... [more]
A0A835ZDP8_9STRA5.880e-10567.76Tetrapyrrole methylase n=1 Tax=Tribonema minus Tax... [more]
A0A6T5QQD2_HETAK3.730e-9358.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2LDV1_9STRA3.960e-8957.43Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A1E7FE26_9STRA2.100e-8655.56Uroporphyrin-III C-m n=1 Tax=Fragilariopsis cylind... [more]
A0A7S4AWV6_9STRA9.640e-8658.68Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S0HSB0_9CRYP1.070e-8557.33Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1J6F0_GUITC1.720e-8557.81TP_methylase domain-containing protein n=1 Tax=Gui... [more]
B8C0W2_THAPS1.310e-8457.51TP_methylase domain-containing protein (Fragment) ... [more]
A0A7S4NG18_GUITH2.460e-8457.81Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1895contigH-elongata_contig1895:6022..11257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score477.2
Seed ortholog evalue7.3e-132
Seed eggNOG ortholog2880.D8LR67
KEGG rclassRC00003,RC00871
KEGG koko:K00589
KEGG ReactionR03194
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
EggNOG free text desc.uroporphyrin-III C-methyltransferase activity
EggNOG OGsCOG0007@1,KOG1527@2759
EC2.1.1.107
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionuroporphyrinogen-III C-methyltransferase, putative chloroplast precursor
Ec32 orthologEc-06_004170.1
Exons4
Model size2483
Cds size1200
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1895.5210.1prot_H-elongata_contig1895.5210.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1895 7254..11206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.8121488-UTR-H-elongata_contig1895:6021..72531622930082.8121488-UTR-H-elongata_contig1895:6021..7253Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1895 6022..7253 -
1691679274.1343436-UTR-H-elongata_contig1895:6021..72531691679274.1343436-UTR-H-elongata_contig1895:6021..7253Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1895 6022..7253 -
1622930082.9015214-UTR-H-elongata_contig1895:11206..112571622930082.9015214-UTR-H-elongata_contig1895:11206..11257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1895 11207..11257 -
1691679274.1944392-UTR-H-elongata_contig1895:11206..112571691679274.1944392-UTR-H-elongata_contig1895:11206..11257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1895 11207..11257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.8326879-CDS-H-elongata_contig1895:7253..75301622930082.8326879-CDS-H-elongata_contig1895:7253..7530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1895 7254..7530 -
1691679274.1475086-CDS-H-elongata_contig1895:7253..75301691679274.1475086-CDS-H-elongata_contig1895:7253..7530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1895 7254..7530 -
1622930082.8454638-CDS-H-elongata_contig1895:7751..79421622930082.8454638-CDS-H-elongata_contig1895:7751..7942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1895 7752..7942 -
1691679274.1571789-CDS-H-elongata_contig1895:7751..79421691679274.1571789-CDS-H-elongata_contig1895:7751..7942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1895 7752..7942 -
1622930082.8632154-CDS-H-elongata_contig1895:8471..87471622930082.8632154-CDS-H-elongata_contig1895:8471..8747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1895 8472..8747 -
1691679274.1672094-CDS-H-elongata_contig1895:8471..87471691679274.1672094-CDS-H-elongata_contig1895:8471..8747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1895 8472..8747 -
1622930082.8874583-CDS-H-elongata_contig1895:10750..112061622930082.8874583-CDS-H-elongata_contig1895:10750..11206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1895 10751..11206 -
1691679274.1820612-CDS-H-elongata_contig1895:10750..112061691679274.1820612-CDS-H-elongata_contig1895:10750..11206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1895 10751..11206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1895.5210.1

>prot_H-elongata_contig1895.5210.1 ID=prot_H-elongata_contig1895.5210.1|Name=mRNA_H-elongata_contig1895.5210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=400bp
MTEPLKRRETRSLMALALAVLTVSRGAVAFVVGDVFALRQRSAPSSGVDT
PLAQRHMAQRRQPDQAKIPITFFTSCTPRKSKALASALSEDSASTDDMDG
WNPRDGIETGTVSLVGGGPGDPDLLTIAGLRELQSADLVIADRLISEEIL
GLVKGELRVARKYPGCAEQAQREIYRWMREGLSSGKHVVRLKIGDPYIFG
RGGEEVLEMRKLGVEPYVVPGISSVFSAPLLGGVPVTHRGVATQVALGTG
YGQDYARPDICDYHPQKTAVFLMAIGRLEGLCEDLVQRSFPRDCPIAIVE
NASTPRQRVITGTVDTISGIARGLNVKAPATIVVGEVVKVLHGSKQGLIS
DAANGMFFGVDAARVAKAAKTAADKIDKINKGLGSAEKNITSSGVSIGA*
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mRNA from alignment at H-elongata_contig1895:6022..11257-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1895.5210.1 ID=mRNA_H-elongata_contig1895.5210.1|Name=mRNA_H-elongata_contig1895.5210.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5236bp|location=Sequence derived from alignment at H-elongata_contig1895:6022..11257- (Himanthalia elongata Himel1 dioecious)
AGAAGCACTCCGTGTGCCAGTGCTTCCCCCCTCTTCCGCACACGCTCGTC
CATGACGGAACCATTGAAACGAAGAGAGACGCGATCTTTGATGGCTCTGG
CCCTTGCAGTGTTGACCGTCAGTCGAGGTGCAGTGGCGTTTGTGGTCGGT
GACGTGTTCGCGTTGCGGCAGCGATCGGCGCCCTCATCCGGTGTCGACAC
ACCATTAGCACAGCGACACATGGCTCAGCGGCGTCAGCCCGACCAAGCGA
AAATACCCATCACGTTTTTCACGTCTTGTACTCCTCGCAAATCGAAGGCA
CTGGCTAGTGCGCTCTCGGAGGACAGTGCATCCACGGATGACATGGACGG
TTGGAACCCAAGAGATGGCATTGAGACGGGAACAGTATCTCTTGTTGGGG
GAGGGCCTGGTGACCCCGACCTTCTTACAATCGCGGGCTTGAGGGAGCTG
CAATCGGCCGACCTCGTCATCGCGGATCGACTCATCTCTGAAGAAATACT
AGGATTGGTGAGATTGATGACTACTCTCATTGGCGTGAGTGGCTGTCTTC
CCTGGAGCGATGGCGAAAACTTTTTCTTCTACTGCGTAGAATTAACCGCC
GAAAGTTGCAGTCGGGCTTCTCTCCTTCTCGATAAAATAACCTTATTTTT
GTATTGTTAATATATTCTTGTCAAGAACAAAGTCGATTCTACACATGTAT
AGTAAATAGAAGGGAAGGTTGAGCCTGAAGGAAGCATAAAGGCACCAGGT
AACCAGAATATGTGGAGGGACTAGTAATAATCAATATTAATACTGTAGTG
AGCTCCGAAAAAAAGCGCCTCGCGCTCCGCGATGTTTACAGACTGCGTCA
TAAAGCCGACGTGTGAGTGTTCAACTGATGGCGTCGTGGATCTGTGAGCA
TGAACGAACTCCGTTTGTACCCCAGCAGAGCAGCAGCAACGGGCCCATCG
CGGACAGGGATCGTGGGGGTGTAGGGAGCACGAACTGTCCGTTTATAACG
CTGCTGATAATGGGCCGTCGATCACGTTTTTCCGTAAATACAGTAAAACC
CCACCCTTGCCCCACCCCCGGGGGCACGCGGATTGCAGAAAGTATACGCA
TATGTACTTCGCCCCCCCCCACTTATTTTTTTGGTTATCTAAGGCTTGTT
TTTACTTCGAGGCTTGTACTGATTTGACCCCAGGAGACCCGCTCGCGAGT
GATTTTAAGGCGAAGGGACGTCGGCCATCGAATGGGAGCAAGCTATACGA
GAGTAGATATAGAGTAACGATTCCGGGTTGTTGGGCATCAGAGCGGAAGA
ATGTTTGACGTCCTGACACAATAACTTAGAGTGCGCTAATAAGTTTAGAT
TTCTAGAAAGTAATTCCTAGTAGTACTATATATAGTCCAAAATTAATCGA
GATATATGTACAATGCAACCATGTGCTTTACTCACCTATAATTTTAAAAA
TATATACTCACGTGTGACGATTTTGTTCTCAAAGGTAATAATGTGCACAT
TCGAACCTGACGATAGTTGGTCCCCTGGATTGCACCTCAAGGCGCTAAGA
AGGTGTGGATGTTCGGAGGGTTGGAATGAGTTCAAAGTATTTTTATAATA
TTTGAAATAATATTCATGATGTGTGCGCCGTTTTATTTTTATGTATTTTT
TGTTCGCGAGGAAGTGCGCGCAAAACGCGCGATCGCTCGTTTTCACGCTA
TCTTCGTGGGCTCTATGTAATGCTTATAAAAATGGTACGTACGAGTATTG
AACTTCGGGGAGAGTGGACTAATGTGTTACTACACGGCACTAATGTGTTA
CTACACGGCTGTTGGGGATACATACTAAGTACACTAATATAAAATACATT
TCGTCGGTAGATGCAGTCGTCTATCTTGTTGGTGTGTGTATTTCACACTC
CACCCGATAAACTTACTTTTGGGGAATTTGCGCTCAAGGGTAGCAATATA
TACATTCAATGGATTACACCTAAAAGGGTGCTATGAAGGCGTGGATGTTC
GGAGGGTAGAAATTAGTTCATATGTTTTTTAAGAAAAAACGAATGACGAT
CTCGCTGTTCGGTTCGTTCTGCATGCGCTTCTCCAAAAACAAAAATGTGT
GGTGTAAAATAAAGAGTTTCTGCATTTGAGAGCAAGGATGTACATGAGGA
TGGAATTCTATTTTTTAATAAAAAATAAAAAAGCTACTGTCTGCTGTATC
GCATTTCAAGGTATAAAGTGAAGTAAAAAAATGCAAGTACCAATTTTCCC
TCCGACAATTTGCAGACTCAGAAAAACCAGAGTCTCCCCAGTTGTGTACC
AGTGGATACCAGCAGCAGCAGCCACAGAAAAAATTAGCCGAAAAAGCGGA
AAAGCGTACAGATGGGGACTTTCCCCTATCGACCCCCCCCTCCCCCCCCG
GGCCCCACTTCTTACTTTTTATTTGTTGGGTGATTTTTTTGCTAATTCAA
CACATATCCTTCCAAGATCCCCCTCTCGCCCAAATTTCCCGTACCTGAAC
TAAATAACAGGTTAAAGGAGAACTCCGTGTGGCGAGGAAATATCCAGGCT
GCGCGGAGCAAGCCCAGCGGGAGATCTATCGCTGGATGCGCGAGGGACTC
TCTTCCGGAAAGCACGTAGTCCGCCTCAAGATCGGTGATCCCTATATTTT
TGGCCGGGGCGGTGAAGAGGTGTTGGAAATGCGTAAGCTCGGGGTGGAGC
CCTACGTTGTCCCCGGGATATCATCGGTTTTCTCGGCGCCGCTTCTAGGA
GGCGTTCCCGTGACCCACAGGGGCGTTGCCACGCAGGTTGGTACCGTATG
TATGGTGGACACACGGGGCTGTTGTTGCAGGCGCAATCTGTCAGGCTTAG
GAGTTTTCTTCGCACACCGCAACCGTCTCTAAAATAGCATTGTCCTGTTA
TTCCCAAATGATTATTTTTCTTTCGCGCGCACTTGGGGATGGGGTAGGGT
GGGGGGGGCTGATGATTAATGAGATTGGTTAGTTGTTTCCACGGCTGACG
TGCTGTGTATGCGTGTGTGCTCCGGCCGCTCGTGGCTGATTTGGAGTTTC
GCGCGCGTGAGCTCAACTTTTCCAGAGGCTTTGCTACCGAATCCTCTTTT
TCAGTGCGTGGGCAACCTGTGATCAATTCAACGTACTTGATGCCTGAGAA
AAAAAATCCTAGTGGATATCTGCATCAGGCATCATGGCGCGATCGCGCCC
AGCGACGGCCAGGGGCGGACAATGATCGCAGATGTTTCATTCGCAGAGAT
CGCTGGGTCCTCCGTTATGTCTGGCATCAAAATGCGCCCGTTTACATGCT
ATGTTCGGGCAACAGGTGGCCTTGGGCACGGGGTACGGACAGGACTACGC
GCGCCCAGACATCTGTGATTACCACCCGCAAAAGACTGCGGTGTTCCTGA
TGGCGATCGGCCGCCTCGAGGGGCTGTGCGAAGACCTCGTGCAGCGCTCG
TTCCCAAGGGATTGCCCGATCGCCATTGTCGAGAACGCTTCCACTCCTAG
ACAGAGGTCAGTGCTGAACGGGGCGGTGGTTTGGGCTACCGAAATGCGCC
CTTGGTCATGATGAAAAGCATCTGTTACAAAGGGGGTATATTTTCACGCA
AAACCGCGCCAGATATGAGGTTTCGGCTCGCTGGTCTGATTGATTTATGC
GTAGGTTTCACTGTACATCCGGTCGTCCGCGTTTCTCGCGTCTTACCTCC
GGACCTCGCCTCGCTCACCCCGAACAGAGTCATCACGGGCACCGTGGACA
CGATATCGGGGATCGCCCGTGGACTGAACGTCAAGGCCCCGGCCACAATC
GTCGTGGGGGAGGTGGTTAAGGTGCTGCACGGTTCCAAGCAAGGCTTGAT
CAGCGACGCCGCGAATGGGATGTTCTTTGGGGTCGATGCGGCGAGGGTTG
CGAAAGCGGCGAAGACGGCGGCAGACAAAATAGACAAGATCAACAAGGGG
CTAGGGTCGGCCGAAAAGAACATAACCTCGTCCGGAGTGAGCATCGGCGC
ATGAAGGACGACGGCTCCGTCGATATTTAAACAAATGTTATGATTTCTCA
GGCGGGTGATGTGGCGCCTGTGCTTGATCATCCCCTGGTGCGTATTACGA
TAGGGTTAGGCTTTGTTGGAATTAGGAAGGACACACACAAACACACGTGC
ACACACACATACATCTAGGGCGCAGTGCTGTTCGGATTCAGGTTCTGGTG
TAATTCTTATTGCCTCGTAAGATGTTTTGCGTTCTTGCTGTGTTTCGTGC
GAGGATGTATCAGCCGCAACACAGCAAGCAACGGTGTCGAGCGTCATTGG
AATAGAGCAGCCGCTCGCGAAAGACTGCCGCCACATAGCCTCCAGCTGTA
GGTTTTATTTCGCGGGCGTTCGGCGATGCTTCTCCTGTTACCTCGATTTT
TTGTGGATTGTGGTTGGTAAGCAGTCGTTGAAGGGCTTCACATGGCATCG
CTCCGATCGGCATCGTAACTGCGATCGAAGCGAGGACCCGGGGGCGGTCC
TCTGCAGCCTCCTCCTATCACGTGTTCGTATCGCGCAGGACGCTTTAGTG
GCTTGACTAAGCCCTTGCCGCGACTACTGGGTAATATTTGGTTCGTGTGG
GTGCCGGTCATGGGACCCTTGGCGTCGGACAGAGAACGTGTCGTTACAGG
GCGCGCTTGGCCGATTATATGCTTGCTTGGGGAAGGGGGGGGTCTCTTAT
CGATTCGGGAGGGGGCGTGATAAATTACTCACAGGTTTTCTAGTATGGCG
AGGGATGCACACGTCGAACAGCTAATGGATAATATCGCTCACGGGCTTTT
GGCGGCCAAGTGATGAGTATTTTCGTAGATTTTCGACCTAGACATTACCT
GCGAGTGAACAGTTGTACAGATTGTTTTCTTCGCTTTTTCAGTTGCAGAT
GAGTAAGCATCTTCTCAGGCTCCAGAATTCGTTTATATTTTCGTGTTAGG
ACTGTGCTTGCGTAGATTTTGGACCTCTATTTTTATTTGCGGCTGAAAGC
GGTAGTTGCGCGGGATTACGTCCTCTTGCTCGTTCTCAGGTGAACGCTCT
CACAGGCTTTTTCGTTTTTCTATGAATATCTGCCTCCTCGGCTTATCAAC
ATTTACGGATGAGGCAATTATTCAGACTAACTACAACTTTGTAAGAGAGC
GAAACTGATTTTGAAGTTAATAACGCGCTTTGTTGGGGCGTCGATTTTGT
TTTGGCAACTCTTGATTTGGTTCAAGTTGGGTGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig1895:6022..11257-

>mRNA_H-elongata_contig1895.5210.1 ID=mRNA_H-elongata_contig1895.5210.1|Name=mRNA_H-elongata_contig1895.5210.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2400bp|location=Sequence derived from alignment at H-elongata_contig1895:6022..11257- (Himanthalia elongata Himel1 dioecious)
ATGACGGAACCATTGAAACGAAGAGAGACGCGATCTTTGATGGCTCTGGC
CCTTGCAGTGTTGACCGTCAGTCGAGGTGCAGTGGCGTTTGTGGTCGGTG
ACGTGTTCGCGTTGCGGCAGCGATCGGCGCCCTCATCCGGTGTCGACACA
CCATTAGCACAGCGACACATGGCTCAGCGGCGTCAGCCCGACCAAGCGAA
AATACCCATCACGTTTTTCACGTCTTGTACTCCTCGCAAATCGAAGGCAC
TGGCTAGTGCGCTCTCGGAGGACAGTGCATCCACGGATGACATGGACGGT
TGGAACCCAAGAGATGGCATTGAGACGGGAACAGTATCTCTTGTTGGGGG
AGGGCCTGGTGACCCCGACCTTCTTACAATCGCGGGCTTGAGGGAGCTGC
AATCGGCCGACCTCGTCATCGCGGATCGACTCATCTCTGAAGAAATACTA
GGATTGATGACGGAACCATTGAAACGAAGAGAGACGCGATCTTTGATGGC
TCTGGCCCTTGCAGTGTTGACCGTCAGTCGAGGTGCAGTGGCGTTTGTGG
TCGGTGACGTGTTCGCGTTGCGGCAGCGATCGGCGCCCTCATCCGGTGTC
GACACACCATTAGCACAGCGACACATGGCTCAGCGGCGTCAGCCCGACCA
AGCGAAAATACCCATCACGTTTTTCACGTCTTGTACTCCTCGCAAATCGA
AGGCACTGGCTAGTGCGCTCTCGGAGGACAGTGCATCCACGGATGACATG
GACGGTTGGAACCCAAGAGATGGCATTGAGACGGGAACAGTATCTCTTGT
TGGGGGAGGGCCTGGTGACCCCGACCTTCTTACAATCGCGGGCTTGAGGG
AGCTGCAATCGGCCGACCTCGTCATCGCGGATCGACTCATCTCTGAAGAA
ATACTAGGATTGGTTAAAGGAGAACTCCGTGTGGCGAGGAAATATCCAGG
CTGCGCGGAGCAAGCCCAGCGGGAGATCTATCGCTGGATGCGCGAGGGAC
TCTCTTCCGGAAAGCACGTAGTCCGCCTCAAGATCGGTGATCCCTATATT
TTTGGCCGGGGCGGTGAAGAGGTGTTGGAAATGCGTAAGCTCGGGGTGGA
GCCCTACGTTGTCCCCGGGATATCATCGGTTTTCTCGGCGCCGCTTCTAG
GAGGCGTTCCCGTGACCCACAGGGGCGTTGCCACGCAGGTTAAAGGAGAA
CTCCGTGTGGCGAGGAAATATCCAGGCTGCGCGGAGCAAGCCCAGCGGGA
GATCTATCGCTGGATGCGCGAGGGACTCTCTTCCGGAAAGCACGTAGTCC
GCCTCAAGATCGGTGATCCCTATATTTTTGGCCGGGGCGGTGAAGAGGTG
TTGGAAATGCGTAAGCTCGGGGTGGAGCCCTACGTTGTCCCCGGGATATC
ATCGGTTTTCTCGGCGCCGCTTCTAGGAGGCGTTCCCGTGACCCACAGGG
GCGTTGCCACGCAGGTGGCCTTGGGCACGGGGTACGGACAGGACTACGCG
CGCCCAGACATCTGTGATTACCACCCGCAAAAGACTGCGGTGTTCCTGAT
GGCGATCGGCCGCCTCGAGGGGCTGTGCGAAGACCTCGTGCAGCGCTCGT
TCCCAAGGGATTGCCCGATCGCCATTGTCGAGAACGCTTCCACTCCTAGA
CAGAGGTGGCCTTGGGCACGGGGTACGGACAGGACTACGCGCGCCCAGAC
ATCTGTGATTACCACCCGCAAAAGACTGCGGTGTTCCTGATGGCGATCGG
CCGCCTCGAGGGGCTGTGCGAAGACCTCGTGCAGCGCTCGTTCCCAAGGG
ATTGCCCGATCGCCATTGTCGAGAACGCTTCCACTCCTAGACAGAGAGTC
ATCACGGGCACCGTGGACACGATATCGGGGATCGCCCGTGGACTGAACGT
CAAGGCCCCGGCCACAATCGTCGTGGGGGAGGTGGTTAAGGTGCTGCACG
GTTCCAAGCAAGGCTTGATCAGCGACGCCGCGAATGGGATGTTCTTTGGG
GTCGATGCGGCGAGGGTTGCGAAAGCGGCGAAGACGGCGGCAGACAAAAT
AGACAAGATCAACAAGGGGCTAGGGTCGGCCGAAAAGAACATAACCTCGT
CCGGAGTGAGCATCGGCGCATGAAGTCATCACGGGCACCGTGGACACGAT
ATCGGGGATCGCCCGTGGACTGAACGTCAAGGCCCCGGCCACAATCGTCG
TGGGGGAGGTGGTTAAGGTGCTGCACGGTTCCAAGCAAGGCTTGATCAGC
GACGCCGCGAATGGGATGTTCTTTGGGGTCGATGCGGCGAGGGTTGCGAA
AGCGGCGAAGACGGCGGCAGACAAAATAGACAAGATCAACAAGGGGCTAG
GGTCGGCCGAAAAGAACATAACCTCGTCCGGAGTGAGCATCGGCGCATGA
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