mRNA_H-elongata_contig188864.5182.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188864.5182.1
Unique NamemRNA_H-elongata_contig188864.5182.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188864.5182.1 vs. uniprot
Match: D7FQP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP3_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 6.680e-50
Identity = 77/95 (81.05%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:    1 EWYKRFRSRLWEDLCHQEHEMLDCPAAVLVVVSSTETSGDPVACFHELSSPRYLPPPFESKQYDPLSPALVYVLLHDWCQGAAKGVDPDLVLSQV 285
            EWYKR+R++LW  LCHQEHEMLDCPAAVLVVVSSTE SGDP+ACF ELS PRYLPPPF+S+QYDP SP LVYVLLHDWC GAA+GVDPD +LSQ+
Sbjct:  122 EWYKRYRAKLWGGLCHQEHEMLDCPAAVLVVVSSTEASGDPIACFDELSLPRYLPPPFQSRQYDPQSPTLVYVLLHDWCLGAARGVDPDRLLSQM 216
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BLAST of mRNA_H-elongata_contig188864.5182.1 vs. uniprot
Match: A0A6H5JPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY7_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 3.190e-49
Identity = 79/95 (83.16%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:    1 EWYKRFRSRLWEDLCHQEHEMLDCPAAVLVVVSSTETSGDPVACFHELSSPRYLPPPFESKQYDPLSPALVYVLLHDWCQGAAKGVDPDLVLSQV 285
            EWYKR+R++LWE LCHQEHEMLDCPAAVLVVVSSTE SGDP+ACF ELSSPRYLPPPF+S+QYDP SP LVYVLLHDWC GAA+GVDPD +LSQ+
Sbjct:  122 EWYKRYRTKLWEGLCHQEHEMLDCPAAVLVVVSSTEASGDPIACFDELSSPRYLPPPFQSRQYDPQSPTLVYVLLHDWCLGAARGVDPDRLLSQM 216
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BLAST of mRNA_H-elongata_contig188864.5182.1 vs. uniprot
Match: A0A835YYI3_9STRA (ER-golgi trafficking TRAPP I complex 85 kDa subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.080e-22
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    4 WYKRFRSRLWEDLCHQEHEMLDCPAAVLVVVSSTETSGDPVACFHELSSPRYLPPPFESKQYDPLSPALVYVLLHDWCQGAAKGV 258
            WY+R+R  L E L  +EH +L+CPA +++VVSSTE SGD +ACF EL S R+LPPP++  QYDP     +YVLLHD C+  + G+
Sbjct:  126 WYRRYREELEEGLSGREHTLLECPAVLMMVVSSTEASGDVMACFEELMSSRHLPPPYQRAQYDPAGALPLYVLLHDVCKVLSAGL 210
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BLAST of mRNA_H-elongata_contig188864.5182.1 vs. uniprot
Match: W7U1S1_9STRA (TRAPP III complex, Trs85 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1S1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.220e-12
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    4 WYKRFRSRLWEDLCHQEHEMLDCPAAVLVVVSSTETSGDPVACFHELSSPRYLPPPFESKQYDPLSPALVYVLLHDWCQGAAKG 255
            WY+RFR+ L + L + E EML CPAA+LVVVSS++ +  P+  F ELS P +LP  F++ Q+      +VY+LLHD  +G  +G
Sbjct:  139 WYRRFRASLRQSLHYVEPEMLRCPAALLVVVSSSDQT--PIDRFKELSLPCHLPAAFQTGQFGSQDVPIVYLLLHDEWEGNERG 220
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BLAST of mRNA_H-elongata_contig188864.5182.1 vs. uniprot
Match: M4B2G7_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2G7_HYAAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.310e-10
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    4 WYKRFRSRLWEDLCHQEHEMLDCPAAVLVVVSSTETSGDPVACFHELSSPRYLPPPFESKQYDPLSPALVYVLLHDWCQGAAKGVDPDLVLSQV 285
            WY+ F+  L +    +E+ +L  P A++VV+SST++S  P     EL +PR LP PF+   YD       YV++HD  + A   +DPD++L  V
Sbjct:  136 WYQSFKYTLIDTFRCEEYSLLSYPVAMVVVISSTDSS--PRHSIEELMAPRNLPAPFQQGMYDVNFVPKFYVVVHDVQETAGTSIDPDVILESV 227
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BLAST of mRNA_H-elongata_contig188864.5182.1 vs. uniprot
Match: A0A8K1CIR1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIR1_PYTOL)

HSP 1 Score: 64.7 bits (156), Expect = 4.520e-10
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    4 WYKRFRSRLWEDLCHQEHEMLDCPAAVLVVVSSTETSGDPVACFHELSSPRYLPPPFESKQYDPLSPALVYVLLHDWCQGAAKGVDPDLVL 276
            WY+ F+  L +    +E+ M+  PAA+++VVSST+++  P +CF +LSS + LPP F    YDP  P   Y+++HD  +     +DPD +L
Sbjct:  133 WYREFKRALMDTFRCEEYSMMWQPAAIVLVVSSTDSN--PRSCFEQLSSSQNLPPGFLQGLYDPNVPKY-YLVVHDVVETDGTTIDPDAIL 220
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BLAST of mRNA_H-elongata_contig188864.5182.1 vs. uniprot
Match: I2CPV3_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPV3_NANGC)

HSP 1 Score: 58.2 bits (139), Expect = 3.510e-8
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    4 WYKRFRSRLWEDLCHQEHEMLDCPAAVLVVVSSTETSGDPVACFHELSSPRYLPPPFESKQY 189
            WY+RFR+ L + L + E EML CPAA+LVVVSS++ +  P+  F ELS P +LP  F++ Q+
Sbjct:  139 WYRRFRASLRQSLHYVEPEMLRCPAALLVVVSSSDQT--PIDRFKELSLPCHLPAAFQTGQF 198
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BLAST of mRNA_H-elongata_contig188864.5182.1 vs. uniprot
Match: A0A8J2SKT1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKT1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.880e-7
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:    4 WYKRFRSRLWEDLCHQEHEMLDCPAAVLVVVSSTETSGDPVACFHELSSPRYLPPPFESKQYDPLSPALVYVLLHDWCQGAAKGVD 261
            W  R+R+ L   L H  HE   CPAAV+VVV+S+E +G   A   EL+S R+L P F   +YD        V++HD   GA+   D
Sbjct:  138 WTLRWRTALEATLAHASHESFACPAAVVVVVASSEPAGVGAAV-EELASMRHLAPGFADGRYDARVTPRHVVIIHDSEHGASVARD 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188864.5182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FQP3_ECTSI6.680e-5081.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPY7_9PHAE3.190e-4983.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYI3_9STRA3.080e-2252.94ER-golgi trafficking TRAPP I complex 85 kDa subuni... [more]
W7U1S1_9STRA1.220e-1246.43TRAPP III complex, Trs85 n=3 Tax=Monodopsidaceae T... [more]
M4B2G7_HYAAE3.310e-1037.23Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A8K1CIR1_PYTOL4.520e-1038.46Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
I2CPV3_NANGC3.510e-850.00Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A8J2SKT1_9STRA5.880e-740.70Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188864contigH-elongata_contig188864:276..976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue4.1e-41
Seed eggNOG ortholog2880.D7FQP3
Preferred nameTRAPPC8
KEGG koko:K05750,ko:K11268,ko:K20305
KEGG Pathwayko04810,map04810
GOsGO:0000003,GO:0000045,GO:0000407,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022414,GO:0022607,GO:0030008,GO:0030242,GO:0031267,GO:0031410,GO:0031982,GO:0032258,GO:0032991,GO:0033036,GO:0033365,GO:0034497,GO:0034613,GO:0034727,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045184,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071255,GO:0071702,GO:0071705,GO:0071840,GO:0072665,GO:0097708,GO:0098772,GO:0099023,GO:1905037,GO:1990072
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1938@1,KOG1938@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930080.1287339-CDS-H-elongata_contig188864:277..4541622930080.1287339-CDS-H-elongata_contig188864:277..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188864 278..454 -
1691679273.0286129-CDS-H-elongata_contig188864:277..4541691679273.0286129-CDS-H-elongata_contig188864:277..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188864 278..454 -
1622930080.1422758-CDS-H-elongata_contig188864:868..9761622930080.1422758-CDS-H-elongata_contig188864:868..976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188864 869..976 -
1691679273.0408697-CDS-H-elongata_contig188864:868..9761691679273.0408697-CDS-H-elongata_contig188864:868..976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188864 869..976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188864.5182.1prot_H-elongata_contig188864.5182.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188864 278..976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188864.5182.1

>prot_H-elongata_contig188864.5182.1 ID=prot_H-elongata_contig188864.5182.1|Name=mRNA_H-elongata_contig188864.5182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
EWYKRFRSRLWEDLCHQEHEMLDCPAAVLVVVSSTETSGDPVACFHELSS
PRYLPPPFESKQYDPLSPALVYVLLHDWCQGAAKGVDPDLVLSQV
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mRNA from alignment at H-elongata_contig188864:276..976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188864.5182.1 ID=mRNA_H-elongata_contig188864.5182.1|Name=mRNA_H-elongata_contig188864.5182.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=701bp|location=Sequence derived from alignment at H-elongata_contig188864:276..976- (Himanthalia elongata Himel1 dioecious)
GAATGGTACAAGCGTTTCCGATCTCGTCTGTGGGAGGACCTGTGCCACCA
GGAGCACGAGATGCTGGACTGTCCCGCGGCGGTCCTCGTGGTGGTCTCGA
GCACAGAGGTTATACCATTATACGATCATAACCTTTTGTTTCGTCCCCAT
GACTTATTTTATAACCCGCAGCATGTACGCCTGCTCGCCGACCAAAACCC
GATATTCCGAAGGATTGACCAAAATTACAGTCGAGTCGAACTCCGCGGAC
AGTCATCGGGTAGATAGATATGTATCTTCGTACACACTCCTGGTGCTTCG
GTGCTTCGATTTCATACCCTAAAATATCGTGATTCTCGTGCATGCCTCTT
CGTGCCTTTCCAACGCATCTTGAGTTGGGGTCTCGGAGCGAGTTGACGTA
ATACCGATTTTGTTTTCCAAGGGAAAACTTCTTTTGATTAAAACTTGCCC
CACGCATTTTCTGTCTATCGATCAATGTGCCCACCTAACTGCTTCCCGTG
GCCTAACACTGCGGGGGTCCAGACAAGTGGAGACCCGGTGGCGTGCTTCC
ACGAGCTGTCGTCGCCGCGGTACTTGCCCCCACCCTTCGAGTCCAAACAG
TACGACCCGCTGTCGCCGGCTCTGGTGTACGTGCTGCTGCACGATTGGTG
CCAGGGGGCGGCGAAGGGGGTCGATCCTGATCTAGTACTTTCGCAGGTGC
G
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Coding sequence (CDS) from alignment at H-elongata_contig188864:276..976-

>mRNA_H-elongata_contig188864.5182.1 ID=mRNA_H-elongata_contig188864.5182.1|Name=mRNA_H-elongata_contig188864.5182.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig188864:276..976- (Himanthalia elongata Himel1 dioecious)
GAATGGTACAAGCGTTTCCGATCTCGTCTGTGGGAGGACCTGTGCCACCA
GGAGCACGAGATGCTGGACTGTCCCGCGGCGGTCCTCGTGGTGGTCTCGA
GCACAGAGGAATGGTACAAGCGTTTCCGATCTCGTCTGTGGGAGGACCTG
TGCCACCAGGAGCACGAGATGCTGGACTGTCCCGCGGCGGTCCTCGTGGT
GGTCTCGAGCACAGAGACAAGTGGAGACCCGGTGGCGTGCTTCCACGAGC
TGTCGTCGCCGCGGTACTTGCCCCCACCCTTCGAGTCCAAACAGTACGAC
CCGCTGTCGCCGGCTCTGGTGTACGTGCTGCTGCACGATTGGTGCCAGGG
GGCGGCGAAGGGGGTCGATCCTGATCTAGTACTTTCGCAGGTGACAAGTG
GAGACCCGGTGGCGTGCTTCCACGAGCTGTCGTCGCCGCGGTACTTGCCC
CCACCCTTCGAGTCCAAACAGTACGACCCGCTGTCGCCGGCTCTGGTGTA
CGTGCTGCTGCACGATTGGTGCCAGGGGGCGGCGAAGGGGGTCGATCCTG
ATCTAGTACTTTCGCAGGTG
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