mRNA_H-elongata_contig188711.5176.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188711.5176.1
Unique NamemRNA_H-elongata_contig188711.5176.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Match: A0A6H5KSF9_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.620e-10
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    4 GEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ 111
            G I E EA+RLGLVPSHAYAVLDVKE++GTRLLQV+
Sbjct:    9 GNIAEDEAERLGLVPSHAYAVLDVKEVNGTRLLQVK 44
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BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Match: A0A1Y1Z5G2_9FUNG (Cysteine proteinase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z5G2_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 5.760e-9
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 SGEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ 111
            +GE++E EAD LGLVP+HAYAVLDV+E+ G RLLQV+
Sbjct:  443 TGELDEIEADELGLVPTHAYAVLDVREVDGLRLLQVK 479
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BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Match: A0A7S2DK79_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DK79_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.780e-8
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 SGEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ 111
            +GE+ +AEA+RLGLVP+HAYAVLDV+E+ G RLL V+
Sbjct:   18 TGEMSDAEAERLGLVPTHAYAVLDVREVEGVRLLLVK 54
[Close]
BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Match: A0A067QUQ1_ZOONE (Calpain-7 n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QUQ1_ZOONE)

HSP 1 Score: 57.0 bits (136), Expect = 2.010e-8
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 SGEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ 111
            +GE+ EAEADR GLVP+HAYAVLDV++I G RLLQ++
Sbjct:  463 TGEMNEAEADRSGLVPTHAYAVLDVRKIKGVRLLQLK 499
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BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Match: A0A1V1G5D6_9NEOP (Putative calpain 5 n=2 Tax=Rhinotermitidae TaxID=36985 RepID=A0A1V1G5D6_9NEOP)

HSP 1 Score: 57.0 bits (136), Expect = 2.010e-8
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 SGEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ 111
            +G++ EAEADR GLVPSHAYAVLDV++I G RLLQ++
Sbjct:  463 TGQMSEAEADRSGLVPSHAYAVLDVRKIKGVRLLQLK 499
[Close]
BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Match: A0A154P0V8_DUFNO (Calpain-7 n=1 Tax=Dufourea novaeangliae TaxID=178035 RepID=A0A154P0V8_DUFNO)

HSP 1 Score: 56.6 bits (135), Expect = 2.750e-8
Identity = 25/37 (67.57%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 SGEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ 111
            +GE+ +++A+R GLVPSHAYAVLDVKEI+G RLLQ++
Sbjct:  451 TGELSDSDAERTGLVPSHAYAVLDVKEINGERLLQLK 487
[Close]
BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Match: A0A7S2DIE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DIE1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.270e-8
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 SGEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ 111
            +GE+ +AEA+RLGLVP+HAYAVLDV+E+ G RLL V+
Sbjct:   18 TGEMSDAEAERLGLVPTHAYAVLDVREVEGVRLLLVK 54
[Close]
BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Match: A0A197JFC5_9FUNG (Cysteine proteinase n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JFC5_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 5.140e-8
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 SGEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ 111
            +G + + EADRLGLVP+HAYAVLD+KE+ G RLLQV+
Sbjct:  455 TGHMTDEEADRLGLVPTHAYAVLDLKEVQGLRLLQVK 491
[Close]
BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Match: A0A8H7S1D8_9FUNG (Calpain catalytic domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S1D8_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 5.140e-8
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 SGEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ 111
            +GE+ EAEADRLGLVP+HAYAV+D+K + G R +QV+
Sbjct:  514 TGELTEAEADRLGLVPTHAYAVIDIKTVLGKRFMQVK 550
[Close]
BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Match: A0A2J7PBM1_9NEOP (Calpain-7 n=3 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PBM1_9NEOP)

HSP 1 Score: 55.8 bits (133), Expect = 5.150e-8
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 SGEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ 111
            +GE+ EAEADR GLVP+HAYAVLDV+ + G RLLQ++
Sbjct:  463 TGEMSEAEADRSGLVPTHAYAVLDVRTVKGVRLLQLK 499
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188711.5176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSF9_9PHAE8.620e-1080.56Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A1Y1Z5G2_9FUNG5.760e-970.27Cysteine proteinase n=1 Tax=Basidiobolus meristosp... [more]
A0A7S2DK79_9STRA1.780e-867.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A067QUQ1_ZOONE2.010e-870.27Calpain-7 n=1 Tax=Zootermopsis nevadensis TaxID=13... [more]
A0A1V1G5D6_9NEOP2.010e-870.27Putative calpain 5 n=2 Tax=Rhinotermitidae TaxID=3... [more]
A0A154P0V8_DUFNO2.750e-867.57Calpain-7 n=1 Tax=Dufourea novaeangliae TaxID=1780... [more]
A0A7S2DIE1_9STRA3.270e-867.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A197JFC5_9FUNG5.140e-867.57Cysteine proteinase n=1 Tax=Linnemannia elongata A... [more]
A0A8H7S1D8_9FUNG5.140e-864.86Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A2J7PBM1_9NEOP5.150e-867.57Calpain-7 n=3 Tax=Cryptotermes secundus TaxID=1057... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188711contigH-elongata_contig188711:678..788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.7010477-CDS-H-elongata_contig188711:677..7881622930079.7010477-CDS-H-elongata_contig188711:677..788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188711 678..788 -
1691679272.8156803-CDS-H-elongata_contig188711:677..7881691679272.8156803-CDS-H-elongata_contig188711:677..788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188711 678..788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188711.5176.1prot_H-elongata_contig188711.5176.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188711 678..788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188711.5176.1

>prot_H-elongata_contig188711.5176.1 ID=prot_H-elongata_contig188711.5176.1|Name=mRNA_H-elongata_contig188711.5176.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
SGEIEEAEADRLGLVPSHAYAVLDVKEISGTRLLQVQ
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mRNA from alignment at H-elongata_contig188711:678..788-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188711.5176.1 ID=mRNA_H-elongata_contig188711.5176.1|Name=mRNA_H-elongata_contig188711.5176.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig188711:678..788- (Himanthalia elongata Himel1 dioecious)
TCAGGTGAAATCGAGGAGGCCGAGGCCGACAGGCTGGGGCTCGTTCCCTC
CCATGCTTACGCGGTGCTGGACGTTAAGGAGATATCTGGGACACGACTGC
TACAGGTACAG
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Coding sequence (CDS) from alignment at H-elongata_contig188711:678..788-

>mRNA_H-elongata_contig188711.5176.1 ID=mRNA_H-elongata_contig188711.5176.1|Name=mRNA_H-elongata_contig188711.5176.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig188711:678..788- (Himanthalia elongata Himel1 dioecious)
TCAGGTGAAATCGAGGAGGCCGAGGCCGACAGGCTGGGGCTCGTTCCCTC
CCATGCTTACGCGGTGCTGGACGTTAAGGAGATATCTGGGACACGACTGC
TACAGGTACAGTCAGGTGAAATCGAGGAGGCCGAGGCCGACAGGCTGGGG
CTCGTTCCCTCCCATGCTTACGCGGTGCTGGACGTTAAGGAGATATCTGG
GACACGACTGCTACAGGTACAG
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