mRNA_H-elongata_contig106336.518.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig106336.518.1
Unique Name	mRNA_H-elongata_contig106336.518.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Match: A0A453CQE5_AEGTS (Histone H4 n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CQE5_AEGTS)

HSP 1 Score: 203 bits (517), Expect = 1.990e-65
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 1

Query:    7 LFLTSPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 339
            L L  P  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   43 LLLPDPSTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 153

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BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 201 bits (512), Expect = 4.630e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

Query:   28 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 339
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Match: A0A453MXZ5_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MXZ5_AEGTS)

HSP 1 Score: 201 bits (512), Expect = 5.450e-65
Identity = 104/113 (92.04%), Postives = 106/113 (93.81%), Query Frame = 1

Query:    1 SKLFLTSPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 339
            S     SP  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   18 SSKEAVSPSTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 130

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BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Match: UPI0008738E0C (histone H4-like n=1 Tax=Lates calcarifer TaxID=8187 RepID=UPI0008738E0C)

HSP 1 Score: 201 bits (510), Expect = 1.170e-64
Identity = 102/111 (91.89%), Postives = 106/111 (95.50%), Query Frame = 1

Query:    7 LFLTSPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 339
            +  + P  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 ISFSDPNKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 132

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BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Match: A0A0B2VU23_TOXCA (Histone H4 n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2VU23_TOXCA)

HSP 1 Score: 201 bits (511), Expect = 1.350e-64
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 1

Query:    1 SKLFLTSPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 339
            S+ F+ +  NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   35 SRSFILTSLNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 147

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BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Match: A0A2S2QRE4_9HEMI (Histone H4 (Fragment) n=4 Tax=Hexapoda TaxID=6960 RepID=A0A2S2QRE4_9HEMI)

HSP 1 Score: 200 bits (508), Expect = 1.460e-64
Identity = 102/112 (91.07%), Postives = 106/112 (94.64%), Query Frame = 1

Query:    4 KLFLTSPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 339
            +L      NM+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 RLLFVRSSNMTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 117

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BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Match: UPI001C056972 (histone H4-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C056972)

HSP 1 Score: 201 bits (510), Expect = 1.520e-64
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1

Query:   25 RNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 339
            RNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   36 RNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 140

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BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Match: S7MY36_MYOBR (Histone H4 (Fragment) n=1 Tax=Myotis brandtii TaxID=109478 RepID=S7MY36_MYOBR)

HSP 1 Score: 199 bits (507), Expect = 1.600e-64
Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = 1

Query:   13 LTSPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 339
            ++ P  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 VSDPLTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 109

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BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Match: A0A7S3CDM2_9CHLO (Histone H4 n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7S3CDM2_9CHLO)

HSP 1 Score: 200 bits (509), Expect = 1.670e-64
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 1

Query:   19 SPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 339
            +P  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 TPATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 132

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BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Match: A0A7S4HYH3_9STRA (Histone H4 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4HYH3_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.770e-64
Identity = 104/112 (92.86%), Postives = 106/112 (94.64%), Query Frame = 1

Query:    4 KLFLTSPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 339
            K   T+   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:   12 KTLNTNQNIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 123

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot

BLAST of mRNA_H-elongata_contig106336.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A453CQE5_AEGTS	1.990e-65	93.69	Histone H4 n=3 Tax=Aegilops tauschii subsp. strang...	[more]
A0A3L6V663_9STRA	4.630e-65	100.00	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
A0A453MXZ5_AEGTS	5.450e-65	92.04	Histone H4 n=2 Tax=Aegilops tauschii subsp. strang...	[more]
UPI0008738E0C	1.170e-64	91.89	histone H4-like n=1 Tax=Lates calcarifer TaxID=818...	[more]
A0A0B2VU23_TOXCA	1.350e-64	91.15	Histone H4 n=1 Tax=Toxocara canis TaxID=6265 RepID...	[more]
A0A2S2QRE4_9HEMI	1.460e-64	91.07	Histone H4 (Fragment) n=4 Tax=Hexapoda TaxID=6960 ...	[more]
UPI001C056972	1.520e-64	98.10	histone H4-like n=1 Tax=Melanotaenia boesemani Tax...	[more]
S7MY36_MYOBR	1.600e-64	93.58	Histone H4 (Fragment) n=1 Tax=Myotis brandtii TaxI...	[more]
A0A7S3CDM2_9CHLO	1.670e-64	96.26	Histone H4 n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7...	[more]
A0A7S4HYH3_9STRA	1.770e-64	92.86	Histone H4 n=4 Tax=Bacillariophyta TaxID=2836 RepI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig106336	contig	H-elongata_contig106336:884..1225 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	198.7
Seed ortholog evalue	1.3e-48
Seed eggNOG ortholog	157072.XP_008863623.1
KEGG ko	ko:K11254
KEGG Pathway	ko05034,ko05203,ko05322,map05034,map05203,map05322
GOs	GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG3467@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036
Hectar predicted targeting category	other localisation
Exons	1
Model size	342
Cds size	312
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929594.5753212-CDS-H-elongata_contig106336:883..1195	1622929594.5753212-CDS-H-elongata_contig106336:883..1195	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig106336 884..1195 -
1691679083.6985157-CDS-H-elongata_contig106336:883..1195	1691679083.6985157-CDS-H-elongata_contig106336:883..1195	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig106336 884..1195 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929594.5906084-UTR-H-elongata_contig106336:1195..1225	1622929594.5906084-UTR-H-elongata_contig106336:1195..1225	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig106336 1196..1225 -
1691679083.716597-UTR-H-elongata_contig106336:1195..1225	1691679083.716597-UTR-H-elongata_contig106336:1195..1225	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig106336 1196..1225 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig106336.518.1	prot_H-elongata_contig106336.518.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig106336 884..1195 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig106336:884..1225-
coding sequence from alignment at H-elongata_contig106336:884..1225-

protein sequence of mRNA_H-elongata_contig106336.518.1

>prot_H-elongata_contig106336.518.1 ID=prot_H-elongata_contig106336.518.1|Name=mRNA_H-elongata_contig106336.518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*

mRNA from alignment at H-elongata_contig106336:884..1225-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig106336.518.1 ID=mRNA_H-elongata_contig106336.518.1|Name=mRNA_H-elongata_contig106336.518.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig106336:884..1225- (Himanthalia elongata Himel1 dioecious)
TCTAAACTCTTCTTAACTTCACCAAGAAATATGTCTGGACGTGGAAAAGG
CGGTAAAGGTCTGGGCAAGGGTGGCGCCAAGCGCCACCGTAAGGTTCTAC
GTGACAACATCCAGGGTATCACAAAGCCTGCCATCCGTCGTTTGGCTCGC
CGTGGCGGTGTAAAGCGTATTTCTGGGCTAATTTACGAGGAGACCCGCGG
CGTGCTGAAGGTGTTCCTCGAAAACGTGATCCGCGACTCGGTCACGTACA
CCGAGCATGCTCGCAGGAAGACAGTGACCGCCATGGACGTTGTGTACGCC
CTCAAGCGTCAGGGCCGCACCCTTTATGGTTTTGGTGGCTAA

Coding sequence (CDS) from alignment at H-elongata_contig106336:884..1225-

>mRNA_H-elongata_contig106336.518.1 ID=mRNA_H-elongata_contig106336.518.1|Name=mRNA_H-elongata_contig106336.518.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig106336:884..1225- (Himanthalia elongata Himel1 dioecious)
ATGTCTGGACGTGGAAAAGGCGGTAAAGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGTAAGGTTCTACGTGACAACATCCAGGGTATCACAAAGCCTG
CCATCCGTCGTTTGGCTCGCCGTGGCGGTGTAAAGCGTATTTCTGGGCTA
ATTTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTCCTCGAAAACGTGAT
CCGCGACTCGGTCACGTACACCGAGCATGCTCGCAGGAAGACAGTGACCG
CCATGGACGTTGTGTACGCCCTCAAGCGTCAGGGCCGCACCCTTTATGGT
TTTGGTGGCTAAATGTCTGGACGTGGAAAAGGCGGTAAAGGTCTGGGCAA
GGGTGGCGCCAAGCGCCACCGTAAGGTTCTACGTGACAACATCCAGGGTA
TCACAAAGCCTGCCATCCGTCGTTTGGCTCGCCGTGGCGGTGTAAAGCGT
ATTTCTGGGCTAATTTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTCCT
CGAAAACGTGATCCGCGACTCGGTCACGTACACCGAGCATGCTCGCAGGA
AGACAGTGACCGCCATGGACGTTGTGTACGCCCTCAAGCGTCAGGGCCGC
ACCCTTTATGGTTTTGGTGGCTAA