mRNA_H-elongata_contig18863.5171.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18863.5171.1
Unique NamemRNA_H-elongata_contig18863.5171.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18863.5171.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.190e-10
Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 1 
Query:    1 ELVASDGRDLGHQLFDGEGDDMGMGAGSRQQGARRRPXXSR--DXXXXXXXXXXXXXXLGGDRRQSGGARGQSFQVGTSGASQDQLDEALEIFGDGIQDFNFLKKDEDEDMELGPDGKPLRLSRDAR 375
            ELVASDG+DL +QLFDGE +                 XX    D              LG +RRQ    + +SFQ G  GASQDQ+ EA+EIFG+GIQDF+  K   D D E   DGK  R S+DAR
Sbjct:  190 ELVASDGQDLRNQLFDGEEEXXXXXXXXXXXXXXXXXXXXXXXDEFDSEDDGDFIVDDLGTERRQGRRQQQESFQGGPLGASQDQVYEAMEIFGEGIQDFDLFK---DVDGEDEADGKQ-RASKDAR 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18863.5171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQN4_ECTSI1.190e-1044.09GTB1 RNA binding / hydrolase, acting on ester bond... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18863contigH-elongata_contig18863:2210..5120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue3.8e-10
Seed eggNOG ortholog2880.D8LQN4
KEGG koko:K11292
EggNOG free text desc.obsolete transcription factor activity, core RNA polymerase II binding
EggNOG OGsCOG2183@1,KOG1856@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size381
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18863.5171.1prot_H-elongata_contig18863.5171.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18863 2210..5120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.1642895-CDS-H-elongata_contig18863:2209..22601622930079.1642895-CDS-H-elongata_contig18863:2209..2260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 2210..2260 -
1691679272.7341528-CDS-H-elongata_contig18863:2209..22601691679272.7341528-CDS-H-elongata_contig18863:2209..2260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 2210..2260 -
1622930079.1827118-CDS-H-elongata_contig18863:3671..37891622930079.1827118-CDS-H-elongata_contig18863:3671..3789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 3672..3789 -
1691679272.746868-CDS-H-elongata_contig18863:3671..37891691679272.746868-CDS-H-elongata_contig18863:3671..3789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 3672..3789 -
1622930079.1996255-CDS-H-elongata_contig18863:4539..46961622930079.1996255-CDS-H-elongata_contig18863:4539..4696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 4540..4696 -
1691679272.7565343-CDS-H-elongata_contig18863:4539..46961691679272.7565343-CDS-H-elongata_contig18863:4539..4696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 4540..4696 -
1622930079.212739-CDS-H-elongata_contig18863:5065..51201622930079.212739-CDS-H-elongata_contig18863:5065..5120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 5066..5120 -
1691679272.7654552-CDS-H-elongata_contig18863:5065..51201691679272.7654552-CDS-H-elongata_contig18863:5065..5120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 5066..5120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18863.5171.1

>prot_H-elongata_contig18863.5171.1 ID=prot_H-elongata_contig18863.5171.1|Name=mRNA_H-elongata_contig18863.5171.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
ELVASDGRDLGHQLFDGEGDDMGMGAGSRQQGARRRPPQSRDEFDSEEDD
DFIVDDLGGDRRQSGGARGQSFQVGTSGASQDQLDEALEIFGDGIQDFNF
LKKDEDEDMELGPDGKPLRLSRDARSK
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mRNA from alignment at H-elongata_contig18863:2210..5120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18863.5171.1 ID=mRNA_H-elongata_contig18863.5171.1|Name=mRNA_H-elongata_contig18863.5171.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2911bp|location=Sequence derived from alignment at H-elongata_contig18863:2210..5120- (Himanthalia elongata Himel1 dioecious)
GAGCTTGTAGCCTCGGACGGGCGCGACCTTGGCCATCAACTCTTCGATGG
GGAAGGTGTGATGTAGCTACTTCGGGGACTAAAAGGAGTCGTGGGGACCA
CCGAGGAAGCCTCGTGGTGCCACCTAACGACACATGATGTATTGCTTGAA
CGGTACCCCGTATAGGAGGTGACAAGGCGTAATGCACAAGACCCCAATAC
CACGGGGATGGGGGATGAAAGGGGACGATTAACGGGTATTCCCGCTCAAT
GTTTCGTAGCAGCCACCAGCACAGCATGTTCCTTCCTTTGTCGTATCGCT
GGTTGGAAGTCTTACAACACAACACGGCTCGCCGCAGGAGCTTCCCTGTC
TTATCCGATCTTTGTTGTCTCTCACTCTTCTCTTTCTCTTTATATTCTTC
TCTTTTTCGTTTCGGGGCTTTCAGGGGACGATATGGGCATGGGTGCTGGC
AGTCGGCAGCAAGGCGCTCGCCGTCGTCCGCCGCAGTCACGAGACGAGTT
CGACAGCGAGGAAGACGACGACTTCATCGTTGACGACCTTGGCGGGGACC
GCCGCCAATCGGGAGGGGCGCGGGGACAGAGGTACACTTGTTATCATTCT
TTCTATACTGTACTGTATAGTACCTTTTCTTTCTTTTTTTGAGCTATTTC
TACACAGAGAGGCACAGCTACTGTACGGCTATTTTTCTAGACCTGTTTTT
TTTTCTTGTTAAAACGACATGTATACCTTTTTGCAGTCTGTATAACCTTT
GCAATAGAAACGGATACTTTTAAATACGAATATTTCTGCAACATTTCTTC
GTTTGTTCACGACTTCGCAAGAGAGGTGCTCGCTTTGGTGAATGAAATGA
TACTCTGTAGGGCGTGGCTCTACTTTGATACTATTCGCGTATTCATAGAG
TCGTAGAACTCTAAACTTGGATGCTTTATCGCATTTCATACCGGTACTTG
TATGCAGTATTCAGTATAATATTGTATTTAGTATTCAGTATAATATTGTA
CTGGATACTTTTTTCATACGGAGTAGTACAGTAATGACCACACTACTACT
GAATGGCCGCGGCGGTACGACTATGTTCGTTTACTTCATATAATCGAAAT
CGACCGCCTTCCTCCCCAAACCAGCTCAACTACCATGCTGGGCTTTATCT
CGGAGTTGTTTATTTTTATCTATTTGATCCTGGTGCCGCTCTGATGGGCC
GTACGGGACGGGACGGTGTCATTCTTGGTTAAAGTACACCACCCCTTTCA
TCTCCATCTCAGAGTGCGTGTTTTCCCTGGGGTCATCTCTGGTTTTGCCC
CCCCCCTAAACCCCTTCCCGTGTCCTGGTAGCTTTCAAGTTGGTACGTCG
GGCGCTTCGCAGGACCAGCTCGATGAGGCTCTGGAGATATTTGGGGACGG
TATTCAAGATTTCAATTTCTTGAAAAAAGACGAGGACGAGGACATGGAGG
TGAGCAATGGTAGCACCGGTTTGGGGGGGGCTATGGTATACATTGGGAAG
CGTTTTGGGCGGCGATGACATGAGAGCACCTCGTGTTGGAATCCTTTTTA
CGGTTAGCGGCACTCTGCTAGCAGAGGAACCCCGCCTACTCCCTGTCTTT
TACTTCCACGAATATGGCGTAACCTTGATCGCGTTGGCGTGGTGTTGGGT
TATTAAATACATTACCGGTACTTGTAGGGGCTGGTAGCTTCTTGTGAGGC
ATTCCAAGCCTCGCGTCGCTTTGACTCTGACATTCGTTTGCATTCAGCAC
AGCAGGACAACGTTTCGTAAATATTTATGTGATCCGCAACCATGATAATA
GAAAGTGTTGTCGCTGCCTCGCGAAAGAGTTGTCTTCAAATCACACACAC
GATCATTGATCGGTCCATCAAGCAATCGCGGACGGTCATCGGTTGGGCGG
GAAAAAACGTTAGACACTTTTCGATTGGATGCTATTGCTTGTACTGCTCA
TCGTTGTGGCAGTAGTTTTTCGGGTAAGGCAAAATTTGCATAGCGCAAGG
CAAGCTGATTGGTCGAATTTTCCACCGAGCGGGATAAATTGGATAGCACA
AGCCAACCACATTTCCGCCGAGAAAAAGACTGTGGGAAAGGCACATACCA
GAGGAAAGAAGGAGGCCTGACGCGGAAAGGACAGGGCGGCTCGGGGGATA
CAAAACCGCGGAAATTGTTCTCTCGGTGTAATTATGAACGTGATTTTTTT
TGCAGGGGCTTGTTGTGTGTTGTAAATCTATAGGTTTCTTTGATTTATCG
CTTTTTATCATCTGACCACGACCGGGATCAGCAACCGTTGACGGATCGGT
CGGTTACAGTAGTCGTTAATAGCATGGTAATGGGTCAAATCAATCCATCA
ATGGTCAGGGCCCCGTGTGGGCGCCTTGCTCAACATCGGATGTGTGATAT
TATTAATGCTATTATTAATGCTAATGACTCGTTTTTAATTGATGGAAGAA
CTCTCACCGCACAACACGCCGTGCTTATAATACGTTGTTGTGTGCGTTTA
TTCTATGGAATTACACAAAAAAATAAAGCGGTGTACACTTCGGTAATCTT
TGTTTTACTATTGCAAGGCCCACGGTGTAAAAACGGTAATCGTTTACGTA
CATGAATCGAATATGACACCTACAGTATCGAAAATCAGGCCTGAAATGAA
TGTCGCGTACAAACAAACAAAAAAGCATCACGCTGCAGAGCGAAGCCCCC
CCCCCCCCCCGCAAAAAAAACATGCGCTTTGCGCGAATATTTTAATTTCC
GCAAAACCATCTCCTCCCATTAAATATCTGAGTCACCGTTGCCGCCTTTA
CCAACTTTTCCCCCCTCTGTTTTCGGGTATGTTCTTCCGCCTGCACCACG
CTGCTTTCAGCTGGGGCCTGACGGAAAGCCGCTGCGCCTCAGCAGGGACG
CTCGCTCGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig18863:2210..5120-

>mRNA_H-elongata_contig18863.5171.1 ID=mRNA_H-elongata_contig18863.5171.1|Name=mRNA_H-elongata_contig18863.5171.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig18863:2210..5120- (Himanthalia elongata Himel1 dioecious)
GAGCTTGTAGCCTCGGACGGGCGCGACCTTGGCCATCAACTCTTCGATGG
GGAAGGAGCTTGTAGCCTCGGACGGGCGCGACCTTGGCCATCAACTCTTC
GATGGGGAAGGGGACGATATGGGCATGGGTGCTGGCAGTCGGCAGCAAGG
CGCTCGCCGTCGTCCGCCGCAGTCACGAGACGAGTTCGACAGCGAGGAAG
ACGACGACTTCATCGTTGACGACCTTGGCGGGGACCGCCGCCAATCGGGA
GGGGCGCGGGGACAGAGGGGACGATATGGGCATGGGTGCTGGCAGTCGGC
AGCAAGGCGCTCGCCGTCGTCCGCCGCAGTCACGAGACGAGTTCGACAGC
GAGGAAGACGACGACTTCATCGTTGACGACCTTGGCGGGGACCGCCGCCA
ATCGGGAGGGGCGCGGGGACAGAGCTTTCAAGTTGGTACGTCGGGCGCTT
CGCAGGACCAGCTCGATGAGGCTCTGGAGATATTTGGGGACGGTATTCAA
GATTTCAATTTCTTGAAAAAAGACGAGGACGAGGACATGGAGCTTTCAAG
TTGGTACGTCGGGCGCTTCGCAGGACCAGCTCGATGAGGCTCTGGAGATA
TTTGGGGACGGTATTCAAGATTTCAATTTCTTGAAAAAAGACGAGGACGA
GGACATGGAGCTGGGGCCTGACGGAAAGCCGCTGCGCCTCAGCAGGGACG
CTCGCTCGAAGCTGGGGCCTGACGGAAAGCCGCTGCGCCTCAGCAGGGAC
GCTCGCTCGAAG
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