mRNA_H-elongata_contig187644.5122.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187644.5122.1
Unique NamemRNA_H-elongata_contig187644.5122.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Match: D7FTY8_ECTSI (Putative tyrosine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.630e-18
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 QVAEGTACGMNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLAR 144
            +VAEG ACGM YLH HEPFPI+HRDLKSANLL+D +FN KICDFGLAR
Sbjct:  990 KVAEGLACGMWYLHQHEPFPILHRDLKSANLLLDSSFNPKICDFGLAR 1037
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BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Match: A0A6H5KM77_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM77_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.780e-18
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 QVAEGTACGMNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLAR 144
            +VAEG ACGM YLH HEPFPI+HRDLKSANLL+D + N KICDFGLAR
Sbjct: 1142 KVAEGVACGMWYLHQHEPFPILHRDLKSANLLLDSSLNPKICDFGLAR 1189
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BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Match: A0A835ZK37_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK37_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.950e-15
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 QVAEGTACGMNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLAR 144
            +VAEG ACGMNYLH   P P++HRDLKSANLL+DD+  VKICDFGLAR
Sbjct:  635 RVAEGAACGMNYLHRASP-PVLHRDLKSANLLLDDSLAVKICDFGLAR 681
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BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Match: A0A7S2SJ46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJ46_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.450e-14
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 QVAEGTACGMNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLAR 144
            ++A+G   GM YLH H P P++HRDLKS+NLL D+ FN+KICDFGLAR
Sbjct:  261 RIAQGIVQGMTYLHGHRPEPVLHRDLKSSNLLCDEGFNIKICDFGLAR 308
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BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Match: A0A7S3YBY1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBY1_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 1.400e-12
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 QVAEGTACGMNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLAR 144
            ++A  TACG+ YLH H P  I+HRDLKSAN+L+D ++ VK+ DFGLAR
Sbjct:   17 RIARDTACGVAYLHAHRPQAILHRDLKSANILLDGSYRVKLADFGLAR 64
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BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Match: A0A6I9T3G9_SESIN (receptor-like protein kinase HSL1 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9T3G9_SESIN)

HSP 1 Score: 70.1 bits (170), Expect = 1.490e-12
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 QVAEGTACGMNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLARCATPNPSP 168
            Q+A G A G+ Y+HHH   PIIHRD+KS+N+L+D  FN KI DFGLAR    N  P
Sbjct:  807 QIAIGAAHGLCYMHHHCSSPIIHRDVKSSNILLDSEFNAKIADFGLARMLIKNGEP 862
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BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Match: A0A7S1BCS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCS3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.030e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 QVAEGTACGMNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLAR 144
            +VAEG A  M+YLH   P P++HRDLKSANLL+D++F VKICDFGLAR
Sbjct:  711 RVAEGAARAMSYLHSGHP-PVLHRDLKSANLLLDESFTVKICDFGLAR 757
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BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Match: A0A830BT76_9LAMI (Serine/threonine-protein kinase ctr1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BT76_9LAMI)

HSP 1 Score: 69.3 bits (168), Expect = 2.780e-12
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 VAEGTACGMNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLAR 144
            +A   A GMNYLH+H P PI+HRDLKS NLL+D+N+ VK+CDFGL+R
Sbjct:  712 MAYDVANGMNYLHNHNP-PIVHRDLKSPNLLVDENYTVKVCDFGLSR 757
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BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Match: A0A834ZG32_9MAGN (Protein kinase domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZG32_9MAGN)

HSP 1 Score: 67.8 bits (164), Expect = 2.900e-12
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    4 VAEGTACGMNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLAR 144
            +A   A GMNYLH H P PI+HRDLKS NLL+D N+ VK+CDFGL+R
Sbjct:  104 MAYDVAKGMNYLHRHNP-PIVHRDLKSPNLLVDKNYTVKVCDFGLSR 149
[Close]
BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Match: A0A2G9H3L2_9LAMI (Serine/threonine protein kinase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H3L2_9LAMI)

HSP 1 Score: 68.9 bits (167), Expect = 3.810e-12
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 QVAEGTACGMNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLARCATPNPSP 168
            Q+A GTA G+ Y+HHH   PIIHRD+KS+N+L+D  FN KI DFGLAR       P
Sbjct:  802 QIAIGTAHGLCYMHHHCSPPIIHRDVKSSNILLDSEFNAKIADFGLARLLIKRGEP 857
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187644.5122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY8_ECTSI1.630e-1881.25Putative tyrosine kinase-like protein n=1 Tax=Ecto... [more]
A0A6H5KM77_9PHAE7.780e-1879.17Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835ZK37_9STRA3.950e-1575.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2SJ46_9STRA4.450e-1464.58Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3YBY1_HETAK1.400e-1260.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6I9T3G9_SESIN1.490e-1257.14receptor-like protein kinase HSL1 n=1 Tax=Sesamum ... [more]
A0A7S1BCS3_9STRA2.030e-1268.75Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A830BT76_9LAMI2.780e-1265.96Serine/threonine-protein kinase ctr1 n=1 Tax=Phthe... [more]
A0A834ZG32_9MAGN2.900e-1265.96Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A2G9H3L2_9LAMI3.810e-1257.14Serine/threonine protein kinase n=1 Tax=Handroanth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187644contigH-elongata_contig187644:637..822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue7.1e-11
Seed eggNOG ortholog2880.D7FTY8
Preferred namepats1
KEGG koko:K08844,ko:K17535
KEGG Pathwayko05012,map05012
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004721,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0015629,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0022402,GO:0023052,GO:0030587,GO:0031156,GO:0032502,GO:0035556,GO:0036211,GO:0042578,GO:0042641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045595,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0061640,GO:0065007,GO:0071704,GO:0090702,GO:0099120,GO:0099134,GO:0099135,GO:0099136,GO:0099139,GO:0140096,GO:1901261,GO:1901564,GO:1903047,GO:2000241
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size186
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.9001875-CDS-H-elongata_contig187644:636..7951622930071.9001875-CDS-H-elongata_contig187644:636..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187644 637..795 -
1691679270.1514602-CDS-H-elongata_contig187644:636..7951691679270.1514602-CDS-H-elongata_contig187644:636..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187644 637..795 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.9111753-UTR-H-elongata_contig187644:795..8221622930071.9111753-UTR-H-elongata_contig187644:795..822Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187644 796..822 -
1691679270.1609817-UTR-H-elongata_contig187644:795..8221691679270.1609817-UTR-H-elongata_contig187644:795..822Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187644 796..822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187644.5122.1prot_H-elongata_contig187644.5122.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187644 637..795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187644.5122.1

>prot_H-elongata_contig187644.5122.1 ID=prot_H-elongata_contig187644.5122.1|Name=mRNA_H-elongata_contig187644.5122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MNYLHHHEPFPIIHRDLKSANLLMDDNFNVKICDFGLARCATPNPSPFSW
LTF
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mRNA from alignment at H-elongata_contig187644:637..822-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187644.5122.1 ID=mRNA_H-elongata_contig187644.5122.1|Name=mRNA_H-elongata_contig187644.5122.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig187644:637..822- (Himanthalia elongata Himel1 dioecious)
CAGGTCGCAGAGGGAACGGCGTGTGGGATGAATTACCTTCATCACCACGA
GCCATTCCCTATCATTCACAGAGATCTAAAAAGTGCCAATCTGCTTATGG
ACGACAACTTTAACGTCAAGATCTGCGATTTTGGCCTCGCCAGGTGCGCC
ACACCTAACCCCTCACCCTTCTCATGGCTAACATTT
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Coding sequence (CDS) from alignment at H-elongata_contig187644:637..822-

>mRNA_H-elongata_contig187644.5122.1 ID=mRNA_H-elongata_contig187644.5122.1|Name=mRNA_H-elongata_contig187644.5122.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig187644:637..822- (Himanthalia elongata Himel1 dioecious)
ATGAATTACCTTCATCACCACGAGCCATTCCCTATCATTCACAGAGATCT
AAAAAGTGCCAATCTGCTTATGGACGACAACTTTAACGTCAAGATCTGCG
ATTTTGGCCTCGCCAGGTGCGCCACACCTAACCCCTCACCCTTCTCATGG
CTAACATTTATGAATTACCTTCATCACCACGAGCCATTCCCTATCATTCA
CAGAGATCTAAAAAGTGCCAATCTGCTTATGGACGACAACTTTAACGTCA
AGATCTGCGATTTTGGCCTCGCCAGGTGCGCCACACCTAACCCCTCACCC
TTCTCATGGCTAACATTT
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