mRNA_H-elongata_contig1876.5121.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1876.5121.1
Unique NamemRNA_H-elongata_contig1876.5121.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 2.450e-59
Identity = 175/628 (27.87%), Postives = 241/628 (38.38%), Query Frame = 1
Query:    1 MSHYPLAFLSGVFRGSQLCWTTVDKESFVILSAFQRVPYFLWDGSNIFCDHRNLAYIFSAQ---------------------------------------------------------------------SQDAVARGQIEVVTS-----------LGMVTRSEDGLYRVSYQRRMVLWISEEERMLQARLMVCAHMQDAGHRGA---------------------------------------------------------------------------------------------------------------------------FTSDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERMETTPFQMM--------------------------------------TEQEDLRRDVVKRVREQRDRVRELSGRGHLPVFEVGDYVL-ARVRKPG--------------------RHVRVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGE-YRAQIAWVDLEDEELTWESMSTIYADTPKYIEKKIR 1095
            MSH PL FLSG FRGSQL W TVDKE F I+S F+R+ Y LW G +I  DHRNLAYIF  +                                                                     S++A+   Q  V  S           LG V   ++GL+RV    R VLWI +  R +Q RLM+CAHM++AGHRG                                                                                                                            + SD  THF   VM  +   LGV   F VAN  WS+ T ERM RE+V+T + VL ERR+   +W   + AVQW LN+AYRER  +TP+ +M                                        Q  L + V ++V   R R R  + RG LP F VGDYV+ ARVR+ G                    +HV  V++IV G+ ++VHV R+R YADS L V +++++VF+ +  QGE EM  ++++   P   G  Y  ++ W   E++E TW+ +S IY D P+++++++R
Sbjct: 1004 MSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNVPAVSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 1629          
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.580e-43
Identity = 104/300 (34.67%), Postives = 154/300 (51.33%), Query Frame = 1
Query:  376 FTSDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERMETTPFQMM--------------------------------------TEQEDLRRDVVKRVREQRDRVRELSGRGHLPVFEVGDYVL-ARVRKPG--------------------RHVRVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGE-YRAQIAWVDLEDEELTWESMSTIYADTPKYIEKKIR 1095
            + SD  THF   VM  +   LGV   F VAN  WS+ T ERM REVV+T + VL ERR+   +W   + AVQW LN+AYRER  +TP+ +M                                        Q  L + + ++V   R R R  + RG LP F VGDYV+ ARVR+ G                    +HV  V++IV G+ ++VHV R+R YADS L V +++++VF+ +  QGE EM  ++++   P   G  Y  ++ W   E++E TW+ +S IY D P+++++++R
Sbjct:  109 WVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 406          
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.010e-39
Identity = 120/452 (26.55%), Postives = 183/452 (40.49%), Query Frame = 1
Query:  223 TSLGMVTRSEDGLYRVSYQRRMVLWISEEERMLQARLMVCAHMQDAGHRGA---------------------------------------------------------------------------------------------------------------------------FTSDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERMETTPFQMM--------------------------------------TEQEDLRRDVVKRVREQRDRVRELSGRGHLPVFEVGDYVLARVRKPGRHVRVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTPKYIEKKIR 1095
            T++G  T   +GL+RV    R VLWI ++   LQ RLMVCAHM++AGHRGA                                                                                                                           + SD  +HF   +M  + + LGV  +F VAN  WS+ T ERM REVV+T + ++ E R    +W   + AVQW LN+A+RER  +TP+ +M                                        Q  L ++V+ +V+  R + R  +  G LP F VGDYV+    +   HV  V++IV+GE ++VHV R+R YAD++L + AE++EVF+    QGEFEM  ++ +       G +  ++ WV  + EE TWE +S ++   P++++ ++R
Sbjct: 1260 TAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLKVQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVIVAAER--LHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELR 1708          
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.400e-34
Identity = 115/419 (27.45%), Postives = 144/419 (34.37%), Query Frame = 1
Query:    1 MSHYPLAFLSGVFRGSQLCWTTVDKESFVILSAFQRVPYFLWDGSNIFCDHRNLAYIFSAQ---------------------------------------------------------------------SQDAVARGQIEVVTS-----------LGMVTRSEDGLYRVSYQRRMVLWISEEERMLQARLMVCAHMQDAGHRGA---------------------------------------------------------------------------------------------------------------------------FTSDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERMETTPFQMM 648
            MSH PL FLSG FRGSQL W TVDKE F I+S F+R+ Y LW G +I  DHRNLAYIF  +                                                                     S++A+   Q  V  S           LG V   ++GL+RV    R VLWI +  R +Q RLM+CAHM++AGHRG                                                                                                                            + SD  THF   VM  +   LGV   F VAN  WS+ T ERM RE+V+T + VL ERR+   +W   + AVQW LN+AYRER  +TP+ +M
Sbjct:  228 MSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNVPAVSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVM 646          
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 9.890e-20
Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query:  712 RELSGRGHLPVFEVGDYVL-ARVRKPG--------------------RHVRVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGE-YRAQIAWVDLEDEELTWESMSTIYADTPKYIEKKIR 1095
            R  + RG LP F VGDYV+ ARVR+ G                    +HV  V++IV G+ ++VHV R+R YADS L V +++++VF+ +  QGE EM  ++++   P   G  Y  ++ W   E++E TW+ +S IY D P+++++++R
Sbjct:    4 RAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 151          
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6A3HSR4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HSR4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.320e-16
Identity = 89/296 (30.07%), Postives = 124/296 (41.89%), Query Frame = 1
Query:  382 SDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERME-TTPFQMMT-------------------------EQEDLR-------------RDVV----KRVREQRDRVRELSGRGHLPVFEVGDYVLARV-------------RKPGRHVRVVEDIVTGETQEV---------HVVRMRPYADSSLVVGAEVREVFEMTKH-QGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTP 1071
            SD G HF  QVM+ +S  LG  HHF  A   W++ TVE +NREV+K+ + +LSERR    +W   L  VQ  LN+   +R+   TP    T                         E E ++             R++     KR R  RDR  +  G   LP F  GD+VLA               R P R V+ V D  T E Q++         H  R++ Y D++        E+ E   H QG   + D+ + R  P     +  Q+ W  L+D E +WE   TI +D P
Sbjct:   54 SDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALLGGSQLRGILHPRDPLVSTVTWVEDETIQHLASVRAALDGMHREMTNASEKRRRAARDRHAKKRGCVTLPRFSEGDFVLAATATGRSGNKLALLWRGPKRIVKAVNDY-TFEVQDLMAPFDIELRHASRLQLYRDAAR---GHAEELVEQAIHGQGGHLIEDLKACRLSP-ETHRWEVQVKWFGLDDIEQSWEPAETIRSDVP 344          
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6G0RX23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RX23_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.280e-14
Identity = 84/295 (28.47%), Postives = 121/295 (41.02%), Query Frame = 1
Query:  382 SDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERME-TTPFQMMT-------------------------EQEDLR-------------RDVV----KRVREQRDRVRELSGRGHLPVFEVGDYVLARV-------------RKPGRHVRVVEDIVTGETQEV---------HVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTP 1071
            SD G HF  QVM+ +S  LG  HHF  A   W++ TVE +NREV+K+ + +LSERR    +W   L  VQ  LN+   +R+   TP    T                         E E ++             R++     KR R  RDR  +  G   LP F  GD+VLA               R P R V+ V D  T E Q++         H  R++ Y D++        E+ E   H    ++ + +   +       +  Q+ W  L+D E +WE   TI +D P
Sbjct:  241 SDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALPGGSQLRGILHPRDPLVSTVTWVEDETIQHLASVRAALDGMHREMTNASEKRRRAARDRHAKKRG-VTLPRFSEGDFVLAATATGRSGNKLALLWRGPKRIVKAVNDY-TFEVQDLMAPFDIELRHASRLQLYRDAAR---GHAEELVEQAIHGQGGQLIEGLKACRLSPETHRWEVQVKWFGLDDIEQSWEPAETIRSDVP 530          
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6A3W606_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3W606_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.860e-14
Identity = 87/301 (28.90%), Postives = 126/301 (41.86%), Query Frame = 1
Query:  382 SDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERME-TTPFQMMT-------------------------EQEDLR-------------RDVV----KRVREQRDRVRELSGRGHLPVFEVGDYVLARV-------------RKPGRHVRVVEDIVTGETQEV---------HVVRMRPYADSSLVVGAEVREVFEMTKH-QGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTPKYIEK 1086
            SD G HF  QVM+ +S  LG  HHF  A   W++ TVE +NREV+K+ + +LSERR    +W   L  VQ  LN+   +R+   TP    T                         E E ++             R++     KR R  +DR  +  G   LP F  GD+VLA               R P R V+ V D  T E Q++         H  R++ Y D++        E+ E   H QG   +  + + R  P     +  Q+ W  L+D E +WE   TI +D P + ++
Sbjct:  524 SDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALPGGSQLRGILHPRDPLVSTVTWVEDETIQHLASVRAALDGMHREMTSASEKRRRAAQDRHAKKRG-VTLPRFSEGDFVLAATATGRSGNKLALLWRDPKRIVKAVNDY-TFEVQDLMAPFDIELRHASRLQLYRDAAR---GHAEELVEQAIHGQGGHLIEGLKACRLSP-ETHRWEVQVKWFGLDDIEQSWEPAETIRSDVPVHFQQ 818          
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A0G4IKA6_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IKA6_PLABS)

HSP 1 Score: 82.0 bits (201), Expect = 1.840e-13
Identity = 79/303 (26.07%), Postives = 124/303 (40.92%), Query Frame = 1
Query:  382 SDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERMET-TPFQMMT--------------EQEDLRR------------------------DVVK------RVREQRDRVRELSGRGHLPVFEVGDYVL-------------ARVRKPGRHVRVV-------EDIVTGETQEVHVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTPKYIEKKIR 1095
            +DGG+HFT ++M+ ++    V HH   A   W++ TVER NR V+   R +L+E +     W      VQ V+N     R+    P  ++T              ++   RR                        D  K       VR+QR R+     + H   F VGDYVL             A+ R P R V+++       ED +T      H  R+R YAD+ L    +++   +   +Q    + D++  R D     E + ++ W   ++ E TWE    IY D P+ ++K IR
Sbjct:  114 TDGGSHFTAEIMEELTRLRDVQHHITTAYCPWANGTVERANRTVLNVMRSILNEAQITTHNWPYLCPVVQHVINHTPSRRLNGYAPITVVTGRSPESPLDQIWDPKERQWRRIPPEGFAKYVPMLQEVLDEIHKAVDEAKAQRHASNVRQQRRRL----NKSHYESFIVGDYVLNAKPVPGPAQKLIAQWRGPYRVVKMINDQVYELEDPLTERHFNAHSQRIRRYADADLNRTVDLKRHLQHADNQ--LLVDDLLDCRVD-RETQELQIKVLWSGFDEAEATWEPARVIYEDVPELVQKLIR 409          
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6G0MW14_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MW14_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.140e-13
Identity = 77/301 (25.58%), Postives = 120/301 (39.87%), Query Frame = 1
Query:  376 FTSDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERM--------------------------ETTPFQMMTEQE-----------------DLRRDVVKRVREQRDRVRELSGRGHLPVFEVGDYVLARV-------------RKPGRHVRVVEDIVTGETQEV---------HVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTPKYIE 1083
            + SD G HF  Q+++ +   LG  HHF  A   W++ TVE +NREV+K F+ +LSE+R    +W+  L  +Q  LNS   +R+                           T P    TE +                 +L     KR R  R+R  +  G   LP F  GD+VLA               R P R ++ + D  T E Q++         H  R++ Y D   V      E+ E   H     + + +   +       +  Q+ W  L++ E +WE + TI  D P +++
Sbjct:   52 WVSDQGAHFKNQLIEQLRVALGAHHHFTTAYTPWANGTVEVVNREVLKGFKALLSEKRLHVKDWTSVLPIIQAALNSMPADRLGGVSPLTAFTALPGGSQLRGILHPSDPTVPTVSWTEDQIQQHLASVRTALDGMHLELTNASEKRRRAARERHAKKKG-VVLPKFSEGDFVLAATATGRSGNKLALVWRGPKRIIKALNDY-TFEVQDLVEPFALEIRHASRLQLYRD---VDRGRAEELVEQAIHGQGGHLVEALRACRVSPDTQRWEVQVKWYGLDELEESWEPVETIREDVPVHLQ 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE2.450e-5927.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE2.580e-4334.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE2.010e-3926.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE7.400e-3427.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAI3_9PHAE9.890e-2036.00Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6A3HSR4_9STRA1.320e-1630.07Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6G0RX23_9STRA2.280e-1428.47Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6A3W606_9STRA2.860e-1428.90Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A0G4IKA6_PLABS1.840e-1326.07Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A6G0MW14_9STRA3.140e-1325.58Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1876contigH-elongata_contig1876:11052..12932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog4792.ETI35133
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QDQ4@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1095
Cds size1095
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1876.5121.1prot_H-elongata_contig1876.5121.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1876 11052..12932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.759044-CDS-H-elongata_contig1876:11051..113541622930071.759044-CDS-H-elongata_contig1876:11051..11354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1876 11052..11354 -
1691679270.1056244-CDS-H-elongata_contig1876:11051..113541691679270.1056244-CDS-H-elongata_contig1876:11051..11354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1876 11052..11354 -
1622930071.7778509-CDS-H-elongata_contig1876:11414..115541622930071.7778509-CDS-H-elongata_contig1876:11414..11554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1876 11415..11554 -
1691679270.1167185-CDS-H-elongata_contig1876:11414..115541691679270.1167185-CDS-H-elongata_contig1876:11414..11554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1876 11415..11554 -
1622930071.7933736-CDS-H-elongata_contig1876:11674..119541622930071.7933736-CDS-H-elongata_contig1876:11674..11954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1876 11675..11954 -
1691679270.1273968-CDS-H-elongata_contig1876:11674..119541691679270.1273968-CDS-H-elongata_contig1876:11674..11954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1876 11675..11954 -
1622930071.808375-CDS-H-elongata_contig1876:12320..125071622930071.808375-CDS-H-elongata_contig1876:12320..12507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1876 12321..12507 -
1691679270.1350813-CDS-H-elongata_contig1876:12320..125071691679270.1350813-CDS-H-elongata_contig1876:12320..12507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1876 12321..12507 -
1622930071.8198972-CDS-H-elongata_contig1876:12747..129321622930071.8198972-CDS-H-elongata_contig1876:12747..12932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1876 12748..12932 -
1691679270.1428611-CDS-H-elongata_contig1876:12747..129321691679270.1428611-CDS-H-elongata_contig1876:12747..12932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1876 12748..12932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1876.5121.1

>prot_H-elongata_contig1876.5121.1 ID=prot_H-elongata_contig1876.5121.1|Name=mRNA_H-elongata_contig1876.5121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=365bp
MSHYPLAFLSGVFRGSQLCWTTVDKESFVILSAFQRVPYFLWDGSNIFCD
HRNLAYIFSAQSQDAVARGQIEVVTSLGMVTRSEDGLYRVSYQRRMVLWI
SEEERMLQARLMVCAHMQDAGHRGAFTSDGGTHFTGQVMQMVSSRLGVVH
HFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVL
NSAYRERMETTPFQMMTEQEDLRRDVVKRVREQRDRVRELSGRGHLPVFE
VGDYVLARVRKPGRHVRVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVR
EVFEMTKHQGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMS
TIYADTPKYIEKKIR
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mRNA from alignment at H-elongata_contig1876:11052..12932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1876.5121.1 ID=mRNA_H-elongata_contig1876.5121.1|Name=mRNA_H-elongata_contig1876.5121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1881bp|location=Sequence derived from alignment at H-elongata_contig1876:11052..12932- (Himanthalia elongata Himel1 dioecious)
ATGAGCCATTATCCTCTCGCTTTCCTGAGTGGTGTTTTCCGAGGATCGCA GCTGTGTTGGACCACGGTGGATAAGGAATCTTTCGTCATTCTGAGCGCTT TTCAGCGCGTACCATACTTCCTGTGGGATGGCTCGAACATCTTTTGCGAC CATCGCAACCTGGCGTACATCTTCAGTGCGCAATCGTGCGGCGTGACGCT AAGCAAGGCCGCGTCGCAACGCCTCGCCGGGTGGCGTGCATGTATGAGCC AGTTCAACTACGTGATCCAGCACATCCCCGGGGAGGACGATCATTGGGGT GACCTGTTGTCGAGGTGGCGGGTATTGGATTCCGAAAGTCCCCTAGTGCG CGCGGATGTGATGGCGGTGGTTGCTCCGTCGATAGAAGACTACCAGATGC CGTCGAAAAGTTAAATTAAGGACAGGCAGGACGCGGTGGCGCGCGGTCAA ATTGAGGTGGTGACCTCGTTGGGAATGGTGACTCGTAGTGAAGATGGATT GTATCGCGTGTCATACCAAAGGAGGATGGTGTTGTGGATCTCTGAGGAGG AACGTATGCTACAAGCGCGCTTAATGGTGTGTGCGCACATGCAGGATGCG GGGCACCGTGGCGTTCGGGCAAAGACCCATCGCCTCGGGGCATACTGTGC GTGGAATAATATGGAAAATGACAAAGCAGAATTCGTCCGCTAGTGTCTAC ACTGCGTCGATTCGAAAGCGGGCAATGCTATGCCATGTACCCTAGGCGAT CTAGTGCATGGTACGGAAGCGGGTGACGTTCTTCACTTCGATTACCTCAG TTTGAGGGAAAGCGAGGCCATCGATATGGGTGGTTTGGTCGACGGGGGTT ATACGCATGTGCTAGTGTTGATGGATTATGTGATCCGGTTCGTCTGGCTG GAAGAGGCCGTGTCGTGCTCGATGGAGGTGGCGGTGCGTGCTGTGCCGAA GTGGTGTGCTTCGTCCGGGGTGCCCAAGGCGTTCACCAGTGATGGTGGGA CGCATTTTACCGGGCAAGTGATGCAGATGGTGTCGTCACGATTGGGGGTG GTCCACCATTTTGGTGTGGCGAATGTTTCGTGGTCGCACAGGACGGTGGA ACGGATGAACCGTGAAGTCGTGAAGACGTTCCGTGTGGTCCTCAGCGAAA GGCGTCAGCCCCCGAGCGAGTGGTCGTTGGCGTTGGGGGCTGTGCAATGG GTTCTCAATTCGGCGTATCGGGAGCGCATGGAAACGACGCCATTTCAGAT GATGACAGGTCGACCTCCTGCGACGACAATGTCGGTGCTTGCAGGAGAAG ACGGTGACGAGTGGACTGTGGAGGAGTTAAACGTTTTGGGCGAGCATATG CAGGCCTGGGTTGCTGGTTGGGTTCGAGAGCAGGAAGACTTACGGCGTGA CGTGGTGAAGCGCGTTCGTGAGCAGCGCGACCGTGTCCGAGAGCTAAGCG GTCGTGGGCACTTGCCCGTGTTTGAGGTTGGCGATTATGTCTTGGCTCGG GTGCGGAAACCGGGACGTGTGCGTAAGCTTGTACAGACGTGGACTGGACC GTGGCGTGTTGTGCCTGGAGGATCAGAGCATGTTCGTGTAGTGGAGGACA TTGTCACGGGGGAAACCCAGGAAGTGCACGTGGTGCGGATGCGTCCGTAT GCTGATTCGTCTCTGGTTGTGGGGGCAGAGGTTCGCGAAGTGTTTGAAAT GACCAAGCACCAGGGAGAGTTTGAGATGACCGACGTGATCAGTGTTCGTA AAGATCCGACGCGAGTAGGAGAATACCGGGCGCAGATCGCGTGGGTTGAT CTAGAGGATGAGGAGCTAACGTGGGAATCGATGTCAACTATCTACGCCGA TACTCCCAAGTATATAGAGAAGAAGATACGG
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Coding sequence (CDS) from alignment at H-elongata_contig1876:11052..12932-

>mRNA_H-elongata_contig1876.5121.1 ID=mRNA_H-elongata_contig1876.5121.1|Name=mRNA_H-elongata_contig1876.5121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2190bp|location=Sequence derived from alignment at H-elongata_contig1876:11052..12932- (Himanthalia elongata Himel1 dioecious)
ATGAGCCATTATCCTCTCGCTTTCCTGAGTGGTGTTTTCCGAGGATCGCA
GCTGTGTTGGACCACGGTGGATAAGGAATCTTTCGTCATTCTGAGCGCTT
TTCAGCGCGTACCATACTTCCTGTGGGATGGCTCGAACATCTTTTGCGAC
CATCGCAACCTGGCGTACATCTTCAGTGCGCAATCATGAGCCATTATCCT
CTCGCTTTCCTGAGTGGTGTTTTCCGAGGATCGCAGCTGTGTTGGACCAC
GGTGGATAAGGAATCTTTCGTCATTCTGAGCGCTTTTCAGCGCGTACCAT
ACTTCCTGTGGGATGGCTCGAACATCTTTTGCGACCATCGCAACCTGGCG
TACATCTTCAGTGCGCAATCGCAGGACGCGGTGGCGCGCGGTCAAATTGA
GGTGGTGACCTCGTTGGGAATGGTGACTCGTAGTGAAGATGGATTGTATC
GCGTGTCATACCAAAGGAGGATGGTGTTGTGGATCTCTGAGGAGGAACGT
ATGCTACAAGCGCGCTTAATGGTGTGTGCGCACATGCAGGATGCGGGGCA
CCGTGGCGCAGGACGCGGTGGCGCGCGGTCAAATTGAGGTGGTGACCTCG
TTGGGAATGGTGACTCGTAGTGAAGATGGATTGTATCGCGTGTCATACCA
AAGGAGGATGGTGTTGTGGATCTCTGAGGAGGAACGTATGCTACAAGCGC
GCTTAATGGTGTGTGCGCACATGCAGGATGCGGGGCACCGTGGCGCGTTC
ACCAGTGATGGTGGGACGCATTTTACCGGGCAAGTGATGCAGATGGTGTC
GTCACGATTGGGGGTGGTCCACCATTTTGGTGTGGCGAATGTTTCGTGGT
CGCACAGGACGGTGGAACGGATGAACCGTGAAGTCGTGAAGACGTTCCGT
GTGGTCCTCAGCGAAAGGCGTCAGCCCCCGAGCGAGTGGTCGTTGGCGTT
GGGGGCTGTGCAATGGGTTCTCAATTCGGCGTATCGGGAGCGCATGGAAA
CGACGCCATTTCAGATGATGACAGGCGTTCACCAGTGATGGTGGGACGCA
TTTTACCGGGCAAGTGATGCAGATGGTGTCGTCACGATTGGGGGTGGTCC
ACCATTTTGGTGTGGCGAATGTTTCGTGGTCGCACAGGACGGTGGAACGG
ATGAACCGTGAAGTCGTGAAGACGTTCCGTGTGGTCCTCAGCGAAAGGCG
TCAGCCCCCGAGCGAGTGGTCGTTGGCGTTGGGGGCTGTGCAATGGGTTC
TCAATTCGGCGTATCGGGAGCGCATGGAAACGACGCCATTTCAGATGATG
ACAGAGCAGGAAGACTTACGGCGTGACGTGGTGAAGCGCGTTCGTGAGCA
GCGCGACCGTGTCCGAGAGCTAAGCGGTCGTGGGCACTTGCCCGTGTTTG
AGGTTGGCGATTATGTCTTGGCTCGGGTGCGGAAACCGGGACGTAGCAGG
AAGACTTACGGCGTGACGTGGTGAAGCGCGTTCGTGAGCAGCGCGACCGT
GTCCGAGAGCTAAGCGGTCGTGGGCACTTGCCCGTGTTTGAGGTTGGCGA
TTATGTCTTGGCTCGGGTGCGGAAACCGGGACGTCATGTTCGTGTAGTGG
AGGACATTGTCACGGGGGAAACCCAGGAAGTGCACGTGGTGCGGATGCGT
CCGTATGCTGATTCGTCTCTGGTTGTGGGGGCAGAGGTTCGCGAAGTGTT
TGAAATGACCAAGCACCAGGGAGAGTTTGAGATGACCGACGTGATCAGTG
TTCGTAAAGATCCGACGCGAGTAGGAGAATACCGGGCGCAGATCGCGTGG
GTTGATCTAGAGGATGAGGAGCTAACGTGGGAATCGATGTCAACTATCTA
CGCCGATACTCCCAAGTATATAGAGAAGAAGATACGGCATGTTCGTGTAG
TGGAGGACATTGTCACGGGGGAAACCCAGGAAGTGCACGTGGTGCGGATG
CGTCCGTATGCTGATTCGTCTCTGGTTGTGGGGGCAGAGGTTCGCGAAGT
GTTTGAAATGACCAAGCACCAGGGAGAGTTTGAGATGACCGACGTGATCA
GTGTTCGTAAAGATCCGACGCGAGTAGGAGAATACCGGGCGCAGATCGCG
TGGGTTGATCTAGAGGATGAGGAGCTAACGTGGGAATCGATGTCAACTAT
CTACGCCGATACTCCCAAGTATATAGAGAAGAAGATACGG
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