mRNA_H-elongata_contig1876.5121.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 217 bits (553), Expect = 2.450e-59 Identity = 175/628 (27.87%), Postives = 241/628 (38.38%), Query Frame = 1
Query: 1 MSHYPLAFLSGVFRGSQLCWTTVDKESFVILSAFQRVPYFLWDGSNIFCDHRNLAYIFSAQ---------------------------------------------------------------------SQDAVARGQIEVVTS-----------LGMVTRSEDGLYRVSYQRRMVLWISEEERMLQARLMVCAHMQDAGHRGA---------------------------------------------------------------------------------------------------------------------------FTSDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERMETTPFQMM--------------------------------------TEQEDLRRDVVKRVREQRDRVRELSGRGHLPVFEVGDYVL-ARVRKPG--------------------RHVRVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGE-YRAQIAWVDLEDEELTWESMSTIYADTPKYIEKKIR 1095
MSH PL FLSG FRGSQL W TVDKE F I+S F+R+ Y LW G +I DHRNLAYIF + S++A+ Q V S LG V ++GL+RV R VLWI + R +Q RLM+CAHM++AGHRG + SD THF VM + LGV F VAN WS+ T ERM RE+V+T + VL ERR+ +W + AVQW LN+AYRER +TP+ +M Q L + V ++V R R R + RG LP F VGDYV+ ARVR+ G +HV V++IV G+ ++VHV R+R YADS L V +++++VF+ + QGE EM ++++ P G Y ++ W E++E TW+ +S IY D P+++++++R
Sbjct: 1004 MSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNVPAVSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 1629
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 164 bits (416), Expect = 2.580e-43 Identity = 104/300 (34.67%), Postives = 154/300 (51.33%), Query Frame = 1
Query: 376 FTSDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERMETTPFQMM--------------------------------------TEQEDLRRDVVKRVREQRDRVRELSGRGHLPVFEVGDYVL-ARVRKPG--------------------RHVRVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGE-YRAQIAWVDLEDEELTWESMSTIYADTPKYIEKKIR 1095
+ SD THF VM + LGV F VAN WS+ T ERM REVV+T + VL ERR+ +W + AVQW LN+AYRER +TP+ +M Q L + + ++V R R R + RG LP F VGDYV+ ARVR+ G +HV V++IV G+ ++VHV R+R YADS L V +++++VF+ + QGE EM ++++ P G Y ++ W E++E TW+ +S IY D P+++++++R
Sbjct: 109 WVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 406
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 159 bits (403), Expect = 2.010e-39 Identity = 120/452 (26.55%), Postives = 183/452 (40.49%), Query Frame = 1
Query: 223 TSLGMVTRSEDGLYRVSYQRRMVLWISEEERMLQARLMVCAHMQDAGHRGA---------------------------------------------------------------------------------------------------------------------------FTSDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERMETTPFQMM--------------------------------------TEQEDLRRDVVKRVREQRDRVRELSGRGHLPVFEVGDYVLARVRKPGRHVRVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTPKYIEKKIR 1095
T++G T +GL+RV R VLWI ++ LQ RLMVCAHM++AGHRGA + SD +HF +M + + LGV +F VAN WS+ T ERM REVV+T + ++ E R +W + AVQW LN+A+RER +TP+ +M Q L ++V+ +V+ R + R + G LP F VGDYV+ + HV V++IV+GE ++VHV R+R YAD++L + AE++EVF+ QGEFEM ++ + G + ++ WV + EE TWE +S ++ P++++ ++R
Sbjct: 1260 TAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLKVQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVIVAAER--LHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELR 1708
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 142 bits (359), Expect = 7.400e-34 Identity = 115/419 (27.45%), Postives = 144/419 (34.37%), Query Frame = 1
Query: 1 MSHYPLAFLSGVFRGSQLCWTTVDKESFVILSAFQRVPYFLWDGSNIFCDHRNLAYIFSAQ---------------------------------------------------------------------SQDAVARGQIEVVTS-----------LGMVTRSEDGLYRVSYQRRMVLWISEEERMLQARLMVCAHMQDAGHRGA---------------------------------------------------------------------------------------------------------------------------FTSDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERMETTPFQMM 648
MSH PL FLSG FRGSQL W TVDKE F I+S F+R+ Y LW G +I DHRNLAYIF + S++A+ Q V S LG V ++GL+RV R VLWI + R +Q RLM+CAHM++AGHRG + SD THF VM + LGV F VAN WS+ T ERM RE+V+T + VL ERR+ +W + AVQW LN+AYRER +TP+ +M
Sbjct: 228 MSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNVPAVSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVM 646
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 9.890e-20 Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query: 712 RELSGRGHLPVFEVGDYVL-ARVRKPG--------------------RHVRVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGE-YRAQIAWVDLEDEELTWESMSTIYADTPKYIEKKIR 1095
R + RG LP F VGDYV+ ARVR+ G +HV V++IV G+ ++VHV R+R YADS L V +++++VF+ + QGE EM ++++ P G Y ++ W E++E TW+ +S IY D P+++++++R
Sbjct: 4 RAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 151
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6A3HSR4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HSR4_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.320e-16 Identity = 89/296 (30.07%), Postives = 124/296 (41.89%), Query Frame = 1
Query: 382 SDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERME-TTPFQMMT-------------------------EQEDLR-------------RDVV----KRVREQRDRVRELSGRGHLPVFEVGDYVLARV-------------RKPGRHVRVVEDIVTGETQEV---------HVVRMRPYADSSLVVGAEVREVFEMTKH-QGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTP 1071
SD G HF QVM+ +S LG HHF A W++ TVE +NREV+K+ + +LSERR +W L VQ LN+ +R+ TP T E E ++ R++ KR R RDR + G LP F GD+VLA R P R V+ V D T E Q++ H R++ Y D++ E+ E H QG + D+ + R P + Q+ W L+D E +WE TI +D P
Sbjct: 54 SDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALLGGSQLRGILHPRDPLVSTVTWVEDETIQHLASVRAALDGMHREMTNASEKRRRAARDRHAKKRGCVTLPRFSEGDFVLAATATGRSGNKLALLWRGPKRIVKAVNDY-TFEVQDLMAPFDIELRHASRLQLYRDAAR---GHAEELVEQAIHGQGGHLIEDLKACRLSP-ETHRWEVQVKWFGLDDIEQSWEPAETIRSDVP 344
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6G0RX23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RX23_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.280e-14 Identity = 84/295 (28.47%), Postives = 121/295 (41.02%), Query Frame = 1
Query: 382 SDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERME-TTPFQMMT-------------------------EQEDLR-------------RDVV----KRVREQRDRVRELSGRGHLPVFEVGDYVLARV-------------RKPGRHVRVVEDIVTGETQEV---------HVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTP 1071
SD G HF QVM+ +S LG HHF A W++ TVE +NREV+K+ + +LSERR +W L VQ LN+ +R+ TP T E E ++ R++ KR R RDR + G LP F GD+VLA R P R V+ V D T E Q++ H R++ Y D++ E+ E H ++ + + + + Q+ W L+D E +WE TI +D P
Sbjct: 241 SDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALPGGSQLRGILHPRDPLVSTVTWVEDETIQHLASVRAALDGMHREMTNASEKRRRAARDRHAKKRG-VTLPRFSEGDFVLAATATGRSGNKLALLWRGPKRIVKAVNDY-TFEVQDLMAPFDIELRHASRLQLYRDAAR---GHAEELVEQAIHGQGGQLIEGLKACRLSPETHRWEVQVKWFGLDDIEQSWEPAETIRSDVP 530
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6A3W606_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3W606_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.860e-14 Identity = 87/301 (28.90%), Postives = 126/301 (41.86%), Query Frame = 1
Query: 382 SDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERME-TTPFQMMT-------------------------EQEDLR-------------RDVV----KRVREQRDRVRELSGRGHLPVFEVGDYVLARV-------------RKPGRHVRVVEDIVTGETQEV---------HVVRMRPYADSSLVVGAEVREVFEMTKH-QGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTPKYIEK 1086
SD G HF QVM+ +S LG HHF A W++ TVE +NREV+K+ + +LSERR +W L VQ LN+ +R+ TP T E E ++ R++ KR R +DR + G LP F GD+VLA R P R V+ V D T E Q++ H R++ Y D++ E+ E H QG + + + R P + Q+ W L+D E +WE TI +D P + ++
Sbjct: 524 SDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALPGGSQLRGILHPRDPLVSTVTWVEDETIQHLASVRAALDGMHREMTSASEKRRRAAQDRHAKKRG-VTLPRFSEGDFVLAATATGRSGNKLALLWRDPKRIVKAVNDY-TFEVQDLMAPFDIELRHASRLQLYRDAAR---GHAEELVEQAIHGQGGHLIEGLKACRLSP-ETHRWEVQVKWFGLDDIEQSWEPAETIRSDVPVHFQQ 818
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A0G4IKA6_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IKA6_PLABS) HSP 1 Score: 82.0 bits (201), Expect = 1.840e-13 Identity = 79/303 (26.07%), Postives = 124/303 (40.92%), Query Frame = 1
Query: 382 SDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERMET-TPFQMMT--------------EQEDLRR------------------------DVVK------RVREQRDRVRELSGRGHLPVFEVGDYVL-------------ARVRKPGRHVRVV-------EDIVTGETQEVHVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTPKYIEKKIR 1095
+DGG+HFT ++M+ ++ V HH A W++ TVER NR V+ R +L+E + W VQ V+N R+ P ++T ++ RR D K VR+QR R+ + H F VGDYVL A+ R P R V+++ ED +T H R+R YAD+ L +++ + +Q + D++ R D E + ++ W ++ E TWE IY D P+ ++K IR
Sbjct: 114 TDGGSHFTAEIMEELTRLRDVQHHITTAYCPWANGTVERANRTVLNVMRSILNEAQITTHNWPYLCPVVQHVINHTPSRRLNGYAPITVVTGRSPESPLDQIWDPKERQWRRIPPEGFAKYVPMLQEVLDEIHKAVDEAKAQRHASNVRQQRRRL----NKSHYESFIVGDYVLNAKPVPGPAQKLIAQWRGPYRVVKMINDQVYELEDPLTERHFNAHSQRIRRYADADLNRTVDLKRHLQHADNQ--LLVDDLLDCRVD-RETQELQIKVLWSGFDEAEATWEPARVIYEDVPELVQKLIR 409
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Match: A0A6G0MW14_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MW14_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 3.140e-13 Identity = 77/301 (25.58%), Postives = 120/301 (39.87%), Query Frame = 1
Query: 376 FTSDGGTHFTGQVMQMVSSRLGVVHHFGVANVSWSHRTVERMNREVVKTFRVVLSERRQPPSEWSLALGAVQWVLNSAYRERM--------------------------ETTPFQMMTEQE-----------------DLRRDVVKRVREQRDRVRELSGRGHLPVFEVGDYVLARV-------------RKPGRHVRVVEDIVTGETQEV---------HVVRMRPYADSSLVVGAEVREVFEMTKHQGEFEMTDVISVRKDPTRVGEYRAQIAWVDLEDEELTWESMSTIYADTPKYIE 1083
+ SD G HF Q+++ + LG HHF A W++ TVE +NREV+K F+ +LSE+R +W+ L +Q LNS +R+ T P TE + +L KR R R+R + G LP F GD+VLA R P R ++ + D T E Q++ H R++ Y D V E+ E H + + + + + Q+ W L++ E +WE + TI D P +++
Sbjct: 52 WVSDQGAHFKNQLIEQLRVALGAHHHFTTAYTPWANGTVEVVNREVLKGFKALLSEKRLHVKDWTSVLPIIQAALNSMPADRLGGVSPLTAFTALPGGSQLRGILHPSDPTVPTVSWTEDQIQQHLASVRTALDGMHLELTNASEKRRRAARERHAKKKG-VVLPKFSEGDFVLAATATGRSGNKLALVWRGPKRIIKALNDY-TFEVQDLVEPFALEIRHASRLQLYRD---VDRGRAEELVEQAIHGQGGHLVEALRACRVSPDTQRWEVQVKWYGLDELEESWEPVETIREDVPVHLQ 347 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1876.5121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1876.5121.1 >prot_H-elongata_contig1876.5121.1 ID=prot_H-elongata_contig1876.5121.1|Name=mRNA_H-elongata_contig1876.5121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=365bp MSHYPLAFLSGVFRGSQLCWTTVDKESFVILSAFQRVPYFLWDGSNIFCDback to top mRNA from alignment at H-elongata_contig1876:11052..12932- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1876.5121.1 ID=mRNA_H-elongata_contig1876.5121.1|Name=mRNA_H-elongata_contig1876.5121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1881bp|location=Sequence derived from alignment at H-elongata_contig1876:11052..12932- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1876:11052..12932- >mRNA_H-elongata_contig1876.5121.1 ID=mRNA_H-elongata_contig1876.5121.1|Name=mRNA_H-elongata_contig1876.5121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2190bp|location=Sequence derived from alignment at H-elongata_contig1876:11052..12932- (Himanthalia elongata Himel1 dioecious)back to top |