mRNA_H-elongata_contig106241.509.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Match: D8LHG5_ECTSI (DNA primase large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG5_ECTSI) HSP 1 Score: 202 bits (513), Expect = 6.650e-60 Identity = 108/145 (74.48%), Postives = 122/145 (84.14%), Query Frame = 1
Query: 1 MYLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGEDYKRALKECLNKHMKMSTLSEDSARAGRRKDVISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPTEMDRFIDAHRLPFKVVDAERKAALRS 435
MY EAPFEEITLDEFEL+ALDRLQ+LRK EDLKA RNVRG+D++RAL+E L+K+MK+STL+E+SA A +RKD ISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSP EM +FI H L F+VV ERKAALRS
Sbjct: 29 MYNEAPFEEITLDEFELVALDRLQVLRKIEDLKA---------RNVRGDDFRRALRESLHKYMKLSTLNEESASADKRKDTISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPAEMSKFIPEHGLFFEVVTPERKAALRS 164
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Match: A0A835YS26_9STRA (DNA primase large subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS26_9STRA) HSP 1 Score: 146 bits (369), Expect = 5.950e-39 Identity = 83/145 (57.24%), Postives = 104/145 (71.72%), Query Frame = 1
Query: 1 MYLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGEDYKRALKECLNKHMKMSTLSEDSARAGRRKDVISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPTEMDRFIDAHRLPFKVVDAERKAALRS 435
MY P EE+TLDEFEL ALDRL +LRK EDLKA R +G ++ L++ +N HMK+++LSE+ A R KD +SHFILRLAYCR+EDLRRWFLTQE+ALFR+RLE LS T + FI ++ L F+VV A+ KAA RS
Sbjct: 27 MYTTPPSEELTLDEFELFALDRLTVLRKLEDLKA---------RGYKGREFTEHLEKAVNTHMKINSLSENVEEAIR-KDTVSHFILRLAYCRTEDLRRWFLTQESALFRYRLESLSSTGIISFIQSNGLAFEVVSADDKAARRS 161
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Match: A0A1X2GGF2_9FUNG (DNA primase large subunit n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GGF2_9FUNG) HSP 1 Score: 113 bits (283), Expect = 9.090e-27 Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = 1
Query: 1 MYLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGEDYKRALKECLNKHMKMSTLSEDSARAGRRKDVISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPTEMDRFIDAHRLPFKVVDAERKAALRS 435
MYL+ P +EIT++EFE+ ALDRLQ+L+ E K RN+ E +K+ ++ ++K++ M + + + RRKD ISHF+LRLAYCRS++ R WFL QE ALF++RL E + + F+++ +L + VV AE+K A+++
Sbjct: 38 MYLDPPTDEITIEEFEIFALDRLQVLKAIESAKL---------RNLNDEQFKKDVQYAVDKYLPMHSNTAFDLISERRKDHISHFVLRLAYCRSDESREWFLRQEAALFKYRLLEENVKDRSAFLESAKLDWHVVTAEQKQAIQN 173
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Match: A0A8H7PVV1_MORIS (DNA primase large subunit n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PVV1_MORIS) HSP 1 Score: 110 bits (275), Expect = 1.210e-25 Identity = 63/144 (43.75%), Postives = 87/144 (60.42%), Query Frame = 1
Query: 4 YLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGEDYKRALKECLNKHMKMSTLSEDSARAGRRKDVISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPTEMDRFIDAHRLPFKVVDAERKAALRS 435
YL P EI++++FE ALDRLQ+L+ E+ RN + ED++R ++ ++H++M A RRKD +SHFILRLAYCRSEDLR WFL QE ALFRHR E S E + F+ + +KVV E K +++
Sbjct: 38 YLRPPPAEISVEDFERFALDRLQVLKTIEN---------ATLRNKKNEDFRREMERVSSEHLRMRPGHTKEAMEDRRKDHVSHFILRLAYCRSEDLRSWFLRQECALFRHRFELESRKEKETFLKTLDINWKVVSQEDKMNMKA 172
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Match: W7TRK8_9STRA (DNA primase large subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRK8_9STRA) HSP 1 Score: 108 bits (271), Expect = 5.400e-25 Identity = 65/145 (44.83%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 1 MYLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGEDYKRALKECLNKHMKMSTLSEDSARAGRRKDVISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPTEMDRFIDAHRLPFKVVDAERKAALRS 435
+Y AP EITL+EFEL ALDRLQILR E L R R ++G++++ L+E ++ M M+ + + R KD ISHFILR+AYC++EDLRRWFL E+ LFR RLE L E +F++ L + VV E L++
Sbjct: 27 LYNTAPQAEITLEEFELYALDRLQILRSIESL---------RLRGMKGDEFRMKLEEIISACMPMTLGTAEEVR----KDQISHFILRIAYCKTEDLRRWFLKHESELFRFRLERLDSNERAKFMEQSGLAYDVVSKEDVLRLKA 158
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Match: A0A068RQP2_9FUNG (DNA primase large subunit n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RQP2_9FUNG) HSP 1 Score: 108 bits (270), Expect = 6.780e-25 Identity = 64/145 (44.14%), Postives = 86/145 (59.31%), Query Frame = 1
Query: 4 YLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGEDYKRALKECLNKHMKMSTLSEDSARA--GRRKDVISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPTEMDRFIDAHRLPFKVVDAERKAALR 432
Y E P EIT++EFEL ALDRLQ+L+ E RN RG DYKR + + L K + M + S + RRKD +SHF+LRLAYCRSED R WFL QE ALF++R E+ + E +F+ +L + ++ E K +R
Sbjct: 45 YTEPPPLEITIEEFELFALDRLQVLKTLES---------AALRNKRGPDYKRQVDQALEKFLPMKSNLTQSTKLLEERRKDHVSHFVLRLAYCRSEDSRAWFLRQECALFKYRFEQETLEEKKKFVAGLKLSWTPLEPEEKRRIR 180
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Match: UPI000CDA9ACB (DNA primase large subunit isoform X2 n=2 Tax=Passeriformes TaxID=9126 RepID=UPI000CDA9ACB) HSP 1 Score: 102 bits (255), Expect = 4.410e-24 Identity = 68/144 (47.22%), Postives = 87/144 (60.42%), Query Frame = 1
Query: 4 YLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGED-YKRALKECLNK-HMKMSTLSEDSARAGRRKDVISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPTEMDRFIDAHRLPFKVVDAERKAAL 429
YLE P E I+L EFE +A+DRL++L+ E+L S VR D YK L+ L K L+ED A RRKD ISHFILRLAYC+SEDLRRWFL QE LFR+R EL+ + M +F++ L F+ + + K L
Sbjct: 29 YLEPPMESISLVEFESLAIDRLKLLKVVENLGVSY---------VRSSDTYKSKLEAELRKLKFPYRALAEDDYEA-RRKDHISHFILRLAYCQSEDLRRWFLQQEMDLFRYRFNELTESLMQKFLEHVNLSFEAIGEDLKNEL 162
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Match: A0A167R3V1_PHYB8 (DNA primase large subunit n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167R3V1_PHYB8) HSP 1 Score: 106 bits (264), Expect = 4.580e-24 Identity = 65/149 (43.62%), Postives = 87/149 (58.39%), Query Frame = 1
Query: 4 YLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGEDYKRALKECLNKHMKMS-------TLSEDSARAGRRKDVISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPTEMDRFIDAHRLPFKVVDAERKAAL 429
YL P EIT++EFEL ALDRLQ+L+ E RN+RG + +R + L +H+ + TL ED RRKD ISH++LRLAYCRSE+LR WFL QE LFR+R E+ E RF+ L +K++D E K ++
Sbjct: 39 YLAPPSTEITIEEFELFALDRLQVLKTLETASL---------RNLRGAELERVMNPVLEQHLPLKSNISQSPTLYED-----RRKDHISHYVLRLAYCRSEELRVWFLRQECNLFRYRFEQEGQEEKRRFLTELNLNWKILDQETKDSI 173
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Match: F2U7T0_SALR5 (DNA primase large subunit n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7T0_SALR5) HSP 1 Score: 106 bits (264), Expect = 5.220e-24 Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 1
Query: 4 YLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGEDYKRALKECLNKHMKMSTLSEDSARAG-RRKDVISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPTEMDRFIDAHRLPFKVVDAERKAAL 429
YL+ P EEI L+EFE +A+ RL L+ E K + RG D+ + + + KH+ ++ ++ R RR+D +SHFILRLAYCR+EDLRRWFLTQET LFRHRL +++ + + + FK VDA K AL
Sbjct: 38 YLQPPQEEIGLEEFEELAVARLHALKACETAKVRYPS--------RGSDFTQLISKAERKHLPVTESGDNDIRYDQRRRDYLSHFILRLAYCRTEDLRRWFLTQETELFRHRLMHQDTQSVNKLLALNNMQFKAVDAGVKQAL 172
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Match: UPI000528153A (DNA primase large subunit-like n=1 Tax=Pterocles gutturalis TaxID=240206 RepID=UPI000528153A) HSP 1 Score: 102 bits (255), Expect = 6.190e-24 Identity = 67/143 (46.85%), Postives = 86/143 (60.14%), Query Frame = 1
Query: 4 YLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGED-YKRALKECLNKHMKMSTLSEDSARAGRRKDVISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPTEMDRFIDAHRLPFKVVDAERKAAL 429
YLE P E I+L EFE A+DRL++L+ E+L S VRG D YK L+ L + + L+ED A RRKD ISHFILRLAYC+SEDLRRWFL QE L R+R EL+ + +F++ L F+ V + K L
Sbjct: 10 YLEPPTESISLVEFESFAIDRLRLLKVVENLGVSY---------VRGSDLYKTKLEGELRRLIPYKALAEDDYEA-RRKDHISHFILRLAYCQSEDLRRWFLQQEMDLLRYRFHELTDSLRQKFLEHVNLSFEAVSEDLKNEL 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106241.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106241.509.1 >prot_H-elongata_contig106241.509.1 ID=prot_H-elongata_contig106241.509.1|Name=mRNA_H-elongata_contig106241.509.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp MYLEAPFEEITLDEFELMALDRLQILRKNEDLKASSRTHGGRARNVRGEDback to top mRNA from alignment at H-elongata_contig106241:324..1911- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106241.509.1 ID=mRNA_H-elongata_contig106241.509.1|Name=mRNA_H-elongata_contig106241.509.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1588bp|location=Sequence derived from alignment at H-elongata_contig106241:324..1911- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106241:324..1911- >mRNA_H-elongata_contig106241.509.1 ID=mRNA_H-elongata_contig106241.509.1|Name=mRNA_H-elongata_contig106241.509.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig106241:324..1911- (Himanthalia elongata Himel1 dioecious)back to top |