mRNA_H-elongata_contig1855.5018.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1855.5018.1
Unique NamemRNA_H-elongata_contig1855.5018.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1855.5018.1 vs. uniprot
Match: D7G202_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G202_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 5.690e-29
Identity = 160/528 (30.30%), Postives = 214/528 (40.53%), Query Frame = 2 
Query:  182 AERLAVLATPLRRRAALGRGPQVAV-------TPRQAAISARKQVEGQRRRXXXXXXXXXXXMMSAAKAKQAAEFVEQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRNILAHKNVEWSKERSLKRRQEQERQAEERMIMEGRTVFLEAKEKIKEERRLIAKRELQWRVNTLTSEKTRKTRVGVRAANEARKLRTIHAQDQAALENAADEEKRLRRESAQWRRNEMMLDVEIKRSVENKALDAKKLAIEF----------------------------------------------------------------------CLR-------------------------------DEDRKARELELL----------KARKAEDDFKRLQHANNRLYKQEEEMKXXXXXXRERRVLLEDRESILEAIRREEEAELDRREALRELPSEKTKLAILEEIWAKQAHPAARAATHGRRRLCLEELEELVSPEASASPEATTSG 1411
            AERLAV+ TP R+                   TPRQAAI+A+K++      X          M + AKAKQA    EQQ             X     XXXXXXXX                              RR  LAH++  W +ER +K+ Q + R+ E+R++MEG  +F EAK ++K+++    K+E  WR N    +K+                          L+ A +EE+RLRR SAQW RN+ +LD EI++    KALD  KLA E                                                                       CLR                                EDR+  EL  L          + +K E++++R Q    R  K++EE++       ERRV+LEDRES+  + RREE+AELDR E LR+ PS+KTKL ILE +WA+Q HPAA AA  GRRR     L+     EA +S E  TSG
Sbjct:   59 AERLAVMGTPARKXXXXXXXXXXXXXXXIAHQTPRQAAIAAKKELTEXXXXXAAMLKQQELEMKNIAKAKQAELAAEQQRTLRERAERAKKQXLAAASXXXXXXXXQTEKQARALQEKMGEQRELNERLAKEERARRRESLAHRSAAWEREREMKKSQRKARKQEQRLVMEGHELFREAKSRVKKQQERTDKQERAWRANRAYLDKSLDEGAEDXXXXXXXXXXXXXXXXXXXLDRAEEEERRLRRTSAQWGRNKQLLDREIEQG-SGKALDPFKLADELFQRAESRKEDAEYREAQKALWRESQQRHRRSEARRKVVGEALHEEEREREADLTASKEEGMRDVEAYRQECLRRDRESLDWHRQKFFDDRAVEEWTKGIAKAAETEDRELSELARLDSEAYKRRVEETQKLEEEYRRQQQIEGRFNKEDEELRMREQEAEERRVMLEDRESVSASKRREEQAELDRLEGLRDTPSDKTKLEILEAMWARQTHPAAAAAARGRRRQSSRRLDLRTVIEAGSSAELGTSG 585
[Close]
BLAST of mRNA_H-elongata_contig1855.5018.1 vs. uniprot
Match: A0A6H5L5K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.720e-19
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 2 
Query: 1049 ARKAEDDFKRLQHANNRLYKQEEEMKXXXXXXRERRVLLEDRESILEAIRREEEAELDRREALRELPSEKTKLAILEEIWAKQAHPAARAATHGRRRLCLEELEELVSPEASASPEATTSG 1411
            A+K E++++R Q   +R YK++EE++       ERRV+LEDRES+  + RREE+AELDR E LR+ PS+KTKL ILE +WA+Q HPAA AA  GRRR     L+     EA +S E  TSG
Sbjct:  241 AQKLEEEYRRQQQIEDRFYKEDEELRMREQEAEERRVMLEDRESVSASKRREEQAELDRLEGLRDTPSDKTKLEILEAMWARQTHPAAAAAARGRRRQSSRRLDLRTVIEAGSSAELGTSG 361
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1855.5018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G202_ECTSI5.690e-2930.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5K2_9PHAE1.720e-1951.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1855contigH-elongata_contig1855:3201..12909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons11
Model size2160
Cds size2061
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1855.5018.1prot_H-elongata_contig1855.5018.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1855 3298..12909 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.8249779-UTR-H-elongata_contig1855:3200..32971622930060.8249779-UTR-H-elongata_contig1855:3200..3297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1855 3201..3297 +
1691679265.6555536-UTR-H-elongata_contig1855:3200..32971691679265.6555536-UTR-H-elongata_contig1855:3200..3297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1855 3201..3297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.841855-CDS-H-elongata_contig1855:3297..34681622930060.841855-CDS-H-elongata_contig1855:3297..3468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 3298..3468 +
1691679265.6650064-CDS-H-elongata_contig1855:3297..34681691679265.6650064-CDS-H-elongata_contig1855:3297..3468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 3298..3468 +
1622930060.8571527-CDS-H-elongata_contig1855:3692..37701622930060.8571527-CDS-H-elongata_contig1855:3692..3770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 3693..3770 +
1691679265.6748738-CDS-H-elongata_contig1855:3692..37701691679265.6748738-CDS-H-elongata_contig1855:3692..3770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 3693..3770 +
1622930060.8705235-CDS-H-elongata_contig1855:4571..47181622930060.8705235-CDS-H-elongata_contig1855:4571..4718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 4572..4718 +
1691679265.6825516-CDS-H-elongata_contig1855:4571..47181691679265.6825516-CDS-H-elongata_contig1855:4571..4718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 4572..4718 +
1622930060.881821-CDS-H-elongata_contig1855:5041..51401622930060.881821-CDS-H-elongata_contig1855:5041..5140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 5042..5140 +
1691679265.6906831-CDS-H-elongata_contig1855:5041..51401691679265.6906831-CDS-H-elongata_contig1855:5041..5140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 5042..5140 +
1622930060.892472-CDS-H-elongata_contig1855:5601..56911622930060.892472-CDS-H-elongata_contig1855:5601..5691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 5602..5691 +
1691679265.7008452-CDS-H-elongata_contig1855:5601..56911691679265.7008452-CDS-H-elongata_contig1855:5601..5691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 5602..5691 +
1622930060.90365-CDS-H-elongata_contig1855:6271..64031622930060.90365-CDS-H-elongata_contig1855:6271..6403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 6272..6403 +
1691679265.7142491-CDS-H-elongata_contig1855:6271..64031691679265.7142491-CDS-H-elongata_contig1855:6271..6403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 6272..6403 +
1622930060.9149878-CDS-H-elongata_contig1855:7211..73121622930060.9149878-CDS-H-elongata_contig1855:7211..7312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 7212..7312 +
1691679265.7256472-CDS-H-elongata_contig1855:7211..73121691679265.7256472-CDS-H-elongata_contig1855:7211..7312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 7212..7312 +
1622930060.9349174-CDS-H-elongata_contig1855:7649..77581622930060.9349174-CDS-H-elongata_contig1855:7649..7758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 7650..7758 +
1691679265.733706-CDS-H-elongata_contig1855:7649..77581691679265.733706-CDS-H-elongata_contig1855:7649..7758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 7650..7758 +
1622930060.9541004-CDS-H-elongata_contig1855:10648..107791622930060.9541004-CDS-H-elongata_contig1855:10648..10779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 10649..10779 +
1691679265.741816-CDS-H-elongata_contig1855:10648..107791691679265.741816-CDS-H-elongata_contig1855:10648..10779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 10649..10779 +
1622930060.9683537-CDS-H-elongata_contig1855:11380..114491622930060.9683537-CDS-H-elongata_contig1855:11380..11449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 11381..11449 +
1691679265.7605808-CDS-H-elongata_contig1855:11380..114491691679265.7605808-CDS-H-elongata_contig1855:11380..11449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 11381..11449 +
1622930060.986854-CDS-H-elongata_contig1855:11975..129091622930060.986854-CDS-H-elongata_contig1855:11975..12909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 11976..12909 +
1691679265.769863-CDS-H-elongata_contig1855:11975..129091691679265.769863-CDS-H-elongata_contig1855:11975..12909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1855 11976..12909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1855.5018.1

>prot_H-elongata_contig1855.5018.1 ID=prot_H-elongata_contig1855.5018.1|Name=mRNA_H-elongata_contig1855.5018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=687bp
MQPSSLQHSLEMSNTAGGSTNGSSLASGAERLAVLATPLRRRAALGRGPQ
VAVTPRQAAISARKQVEGQRRREAALLKQQREEMMSAAKAKQAAEFVEQQ
HAIKKRAETAQRQRKNAAAAKKAAKAIDTAEQAKEFQAKMEESRDLKERL
VNEEKERRRNILAHKNVEWSKERSLKRRQEQERQAEERMIMEGRTVFLEA
KEKIKEERRLIAKRELQWRVNTLTSEKTRKTRVGVRAANEARKLRTIHAQ
DQAALENAADEEKRLRRESAQWRRNEMMLDVEIKRSVENKALDAKKLAIE
FCLRDEDRKARELELLKARKAEDDFKRLQHANNRLYKQEEEMKRKAAAAR
ERRVLLEDRESILEAIRREEEAELDRREALRELPSEKTKLAILEEIWAKQ
AHPAARAATHGRRRLCLEELEELVSPEASASPEATTSGESGEVGRASEEP
NGVVGGGVGGVVGDFGERGGIISVSNIASDSSSSGSSGMGNVRRVSSSSS
LDSMLNECRERCARRGTSALALTESADLSSASFTSQSATGLDDGSGGGGG
FVGDLSVKRNNPRLDDLNLDGREAIYDTAGVSSAPSWSDTSVIEARGVTA
EAAAVLAAAERSFDSEESLDEAGAAAVASAAAWSSSKGSESHESGFPVRA
LVFPPTPSEKEHDGPNAEARCREAGNGQVERSISESE
back to top

mRNA from alignment at H-elongata_contig1855:3201..12909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1855.5018.1 ID=mRNA_H-elongata_contig1855.5018.1|Name=mRNA_H-elongata_contig1855.5018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=9709bp|location=Sequence derived from alignment at H-elongata_contig1855:3201..12909+ (Himanthalia elongata Himel1 dioecious)
CAAGAGTTGGTAACCAATATTTTCTCTAAAACAACACCGTAGTCATTCTA
CTGACTTTGCAATGCACCCCTGACTATCGACTATCGCGGCCTACAGGATG
CAGCCATCTTCGCTGCAGCATTCTTTAGAAATGTCCAACACGGCAGGCGG
CTCTACGAATGGATCGAGCTTGGCATCTGGAGCAGAGCGGTTGGCTGTGC
TTGCGACTCCTCTCCGCAGGAGGGCGGCGTTGGGGCGTGGGCCTCAAGTA
GCCGTTACTCCACGTCAGGTGAGAATGATGTTACTCGTATGGATTACTCG
GCGGCTATCTGGTAGTTGGACTCCCTCATCTAAACAAGAGAACTTTGCTC
CTTCATCTCACGTTGGAAGACAGTATTATTAGTAATATACTTGTACTACT
ATATTTTTTCTTTTTGTGCCACCTCCAACACGCCCACTTCTATATACACC
CTCTCCTCTGCGATTTGGGATGATGTTGCGTGATCCGAGCAGGCCGCAAT
CTCTGCGCGGAAACAGGTGGAGGGTCAAAGAAGACGTGAGGCAGCGCTGT
TGAAGCAGCAGCGCGAGGAGGTAGGAACAGGTGGAGCGTGAGCGCCGCCT
TTTTCTTTAAAAAGCATATTTACTCAATTCAAACCCTCCGAACATCCGCG
CCTTCTTTGCACTATGAGAGGTGCAGTCCAGGCGATCAACAATCGTTAGG
TTCGAGTGTGTGCATTATTCTTAAAAGACAAATGAACTAATTCAAACCCT
TCAAACATCCCATGTCGGGATGCCAAATCGAAACGTATAGAGTATAGAGT
AGGCGTTAAAGAGAAGGGGATGGGGGTTATTAGTGTTTTATTTTTGGGAT
AATAAGGCATTCTATTAACAAAGTTGGGAAAATAGATGTTTCTCGTAGTT
ACAAGTACAAGTAATGTAAAAGAGTCATGACCTTTAGGTGTATTATAAAA
ATACGAGGTACTACGGACGGTAAATACGCTATTTTGTTGTTGGTGGTCGC
ACTTTTCGCAGAAGGAAGAGCCGGATATGGTTGCCTTCTGCTCGTTGTTA
GCTTAACAGGGAAAATTGTCCCCGTTTTATAGCAAGCCAGTTGTAGGATA
GCCCTAGTTATTGCATATACACGAGATGTATCTCGAACTTTTTAGGAAAG
GATGCCCATGCCACTAGATTGTTAGATCCGGACTTAAATCGTTGCAACTC
CCTCGTTTTTATGTTTTTTTTTCGAGGTTTTGGTGTAACGATGGCGAAAT
ATATGGTCAAGATCTAAGATGGCTCGAGTATTAGTAAACTTTCAAGCCAA
ACTGTTCGTTCTACTTACGAAAAATATTGGTGGCTTGTGATATTGAAATG
AAATAAAATGCGATGCAACAGATGATGAGCGCCGCAAAGGCTAAACAGGC
GGCCGAATTTGTAGAGCAGCAGCATGCTATCAAGAAGCGCGCAGAAACGG
CGCAACGTCAAAGGAAGAATGCAGCGGCTGCCAAGAAGGCTGCCAAAGCA
ATCGACACTGCAGAACAGGCATGAAAACAGTAAAAGATAACTACCAGGGT
CTGTAGGTGCCAGTCCCGGCTACCGGGAAGCTTCATACGAAGAAGCCCAT
CCAATCCACCCCTTGCCGTTTCTGAAGTTGGCGGTTTTGATATTTTGTTA
TCGTAGGGAGGCTCTGGTGAAGTGGGAGTGACGGTAACGGCTGGTGGGTG
ATATATTGAACTTTACGTTTGCAAGGTGATAGCGAACAGCAGGCCAGGTC
ACTACAGTAACTGCAGCTTTTAGTGCTCAATCGCACTGATTTACTATAGC
AGTGTTTAATGCCAAGTTTTTTCTTTCGCCTTTTGTCACAGGCGAAGGAA
TTTCAGGCAAAAATGGAGGAGTCGCGTGATCTCAAGGAGCGCCTAGTAAA
TGAGGAGAAGGAGAGAAGGCGAAACATTCTAGCCCACAAGGCAAGCAAGG
ACGTCGCCCACCCAACCCTTTTCTACACCAAATCTTGGGATGTCTACCCG
TCCTTTTCGTGCCTGCGTCTTTTCTTAGTCGACCATTCTCAGCACATGGC
ATATTATAGGGTTTCCACGTGTTACAAACAATGCACTAAAGTGAACAGGA
ACATAAAGTAGTCTGCCAGTGGTGGACTAGTTTAGGTTCCTGTTTACTTT
AGTGCATGTTTTTCATGCATTATTTGTGACGCATGGAAACCCTTAACTAT
GTAATACACTTTACACATTTTTCTCCACAGTAAAGCTATCAATACTTGTT
TTCGGTCTGGTGTAGCTTGAAATGTCTATATGAAAACACATAACGTGTGG
TATTAATACTTCTTACTTATACACCTGATAGCTACTATTCATATTACTAA
CTTTTTTGCCTGTGGTTCTGCTGTACCTCACTTGTTACTGATAATATAAA
GAATGTCGAGTGGTCGAAGGAAAGAAGTCTAAAGCGGAGGCAAGAACAGG
AACGTCAAGCCGAAGAGAGGATGATAATGGAAGGACGCACGGTAAGACGT
CGTCGGAAGTATTATGCTAAACTGTGTAAAGTACTGTAGATTACTGACAT
CCCCCCTAATGTTTTTTAGTTTTTAGTTTTTAGTTAACCCCATACATGCT
GCAGCTTTGAACTTGAATCGAACGAAATGTAAACGAACTGTTTAGCGTCG
GAGATTTTGACACGAGCTCTGCAGTACTCGTCCGCAATCTCAGTACTGTA
CTGTACAAGCATCTTGTTTTGATGCGTACAATGTCAAACAAAAGTTATGG
AAACTCGCACGACTTTTCTCGGAAGCACGGGTGATGAGTGAGCTAGCTAT
ACATTTCTAGTTAAAAAGAAACATTCCAAACCTCCGAACATCCACACCTT
CCTAGCACCGTGAGAAGTGTAATCCAGGGGACCAACTATCATTGCGCTGT
CGATATCTCGTCGCCTTCGCTATCCCCTTGTGTTGGCATAAACCAAGAGC
GAGATTATCAACGGAACCATATCACATCTACTGGCTGTGTTGAGCGAAAC
AAGGGCGCTGTGTTATTATAAATTTTAATACTTTTTCGTCTTTCAAAATA
AAAAACATTTTTGAATATTAGGTTTTCCTCGAGGCAAAGGAGAAGATAAA
GGAAGAGCGGAGACTAATTGCAAAGCGTGAACTTCAGTGGAGGGTGAACA
CGCTCACCTCCGAAAAGACGCGGAAGACTCGGGTGGGGGTGCGTGCAGCT
AACGTGAGTTTTAAAATAGTGTTAGTTGTGACTAGAAAAGCATACATATA
TATATATATATACTGTGTTTGGAACTCATTTGATCCAAACTCTCCAATTA
TCAACATTTTTTTTCTTTTTCTTTTTTGTCTGAACGCTTGAAATAACAAA
ACACAATGGGAAAAAAAACAAGTTTATTATTCGAGGGAGTAAAATCGCCT
CCGATACTGTCAAATTACTTTACCAACAGTTGTGGGAAGATAGAGACATA
ATATAAATGGGCCATGGTGTTACCTGAATAGGCTGAACCCGTTACCTAAG
CTACCTTTAGGACTGCTGGCTTAATTCCGGGGGATTCTCGGTGGTAAACG
CCATTGATACGGAATTACGTGATCTGATGGAATCGGGATTGACCCGATGA
ACATTGATGGTAAAGATAGGCGCCGTCGCGGAAAGCGAGAGGACTGATAG
AATCCCGGGAGTACGCACCCGATTCAGCCTGGGTTGAGAGAATGAGCAGG
CTGACGCGGGACGGGACTGCGAAGCCCGTCCCGCGAGACCAAATACTCAG
ACGCGAACCGATACAGGGAAAATGTGTATTTCCCTGTTCAGCTAACAAGA
AGGCAACCAAATCCGGTGGATCCTTACTCTGCAATATGTGATGACGTCAC
ACACAGTATCGCACTGTAGTACCTTAACTGTACATCACTGTGTCTAGCTC
TTATATACTGCCACGTACGGAGAGTGGCGGTAGCACGCGGCGTGCAGGAC
ATGATTCGCTTGACCAAGGTTGGGTCGTCAAATGTCGCTGTTTTTCACTC
AATGTCCATAGGAGGCGCGCAAGCTGCGTACGATTCATGCGCAGGACCAA
GCCGCTCTGGAAAACGCGGCTGATGAAGAAAAACGTCTCCGCAGAGAGTC
CGCGCAATGGAGGTACATACTATTATAGTATAATATAGTATACTACAGCT
TATTGTATACAAAAAAATGCATACAAAACGCCTCCGAATCCATTCGTGGA
GTGAATGATGCAGGAGTACGTCGGTTTTGTATATACTTGACCAAACGACA
CCGTCTGGTGTGCTCCTGAATATAATAAAGGAATAATACGATACAGAAAA
AAAGCAAAGAGAGAACTTTTTGGTTTTCAAGTCATACCTAAACCACAACC
CTGAATATAATAAAAACACTTTCACCCTCGAATATCACGCCCTCCCCCCT
CGTTTTTTGTTGTTACTTTCCGATGTATTGTTATGCATTTTGTTCGCAGG
AGAAACGAAATGATGCTGGACGTGGAAATCAAGCGTAGCGTGGAAAATAA
AGCCCTCGACGCCAAGAAGCTGGCTATTGAATTCTGCCTCCGCGATGAGG
ACCGCAAGGTACCGATACCGCTGTTATGGTTTTCATATATGTAGGTGGGG
AAGGGGGGTATTCATGTTTTGCATGCCTTAGCTGCTAGACCATTGGCGCC
TCATCCTCGGGCTGGCAAAACATTATTTCCCCATATTCAATCGACGATGG
CCAATCGTCCCTTTTTTCTTTGCCATTTTTTCTTCTTCCTTTTCTGCTTA
TATCCGCCATGCCCTTCTCAGGCCTCTTGTTATCCGCGAGTAAAACCACC
CCACCTTTGTCATGGTTTTTAGAAATATCTCAGATACAACATTTTCCCCC
TTTTTATCAATTTGCATTAGACCGCTCAAACCGGCATGACTAGTACGGGA
GTACCACGCCGATTTGCGAATACTCCCCGCTTATGGGGAGCTATCCCTGA
AGACGTTGGAAGGGTTTACCGTAATCCCCTCTGAGTTCCCCCCCGATGAT
TTTTCCCTCCCCCTACCTCCTTTTCAGCGAAAAAGCATGATTCCGGGATT
TTCCCCCGGGGATTTTTTTTTGGAAAAAAAAATCCCCCTCTACCCATGAT
TTTCTCTCCCGGTTCTTGGAGTGGCATGCTCTATCGCTGAAGCTCTAGTC
GCGATTTCCCCCCCCGGGGGTTTGATTCAAAAGTAAAAAAATATATACCC
TCCTCGGGCGGAACTCAGAGGGGATTACGATATTCTACTCGCGTTGCTCA
CGCAACCGCGCCGGACTACCGCAGCAACTCTCCCTCCTACCCCCGCTACA
TCCACCTCTAGACGGCAAATCTCCGTGGTTTTGGCGTTTAAATTCCGATA
TGGGCTCACCCCCCTCTATTCCTAGGTCGGTTGAGGCCTCCATCCCGTTT
CCGATCTGGCGGATTCTCGTCGCTTGCAGTATATTTATATTTCCTTTTAA
TAGACAGGGTATTTCACAACTTCGTAGATAACGCTGTCATACTCATCCGA
GCCGCAATCATACGTATAGGAAATCTTCGTCGACGTTTCTCGAGGTGTCC
TAGATTTCACTTCACTTTTGTCCCTTCATCCATTGTCCAATGCAACTAAT
ACTTATTTCTGATTTGTTTTGTTGTTCCTGAGATCTGCCTACACAGCCAC
CTGCTACACTACTCTTCTATTCAACATTTCATTGCTGACGACCCTTTTGC
TGGGGATGTTCCATCATTTCTACCTCTCGCATTGCTTGTCGACTCCCTTT
CTTGCTGTTTTCGGCAATCTTTCGTCCCCCAGTTTTTTCATACGATACCG
CCATTTCAGCTTTCTTACGTCTTTTCACCGTTTACATAGGTTTAATGCCC
AGCTCTGCGCTTGGGGTACCCTAAAATGATCTTCGCTGCTTTTAATCTGT
GCCGCTGTGAAATAGTTTTCTGTTTTCGTATTCCAGTTCTATATTGTTGG
TCACACATTTAGCAGAAGATCAACCATATGGCGTACTCTACATATTACAT
ATTACATATGGGATGATTACCTGGTACATGTTTGCAAGTATTGGTGCAAC
TTCCATGTTCGCGCTTTGTTGTTTCCCGTTACATTTACAGTCTTTTGTTA
TCCCTAGTCAAAAATGTGCGTTGATCCATTACTGGAAGCTCCTCGCCCCC
CTTTGCTTCGTCAGTGGGTTTGAAATCCCTCAGTAGAGTATCGCACATTC
ATCCCAAAGTCGCCCGAAGTCTTTACGACTTTCAATCGATCGTTCCTGCA
CACCTGTACTAACGCTGGGGACAGGGTGCAACGTTGTGGGAAGCTGTTCC
CCATTTAGCATTACCGCGCTTTATGTACATTTTCCCCTTTATTCCGTCCT
TGAACAGTTTGCTTCCACGTCCTCAAACTTGATAAAATCGTTCACCATCC
CATCTTCCCCTGCTGCTTTATGGCAATGCAGATTGTCAATCTCGTCCTCA
TTCAAATATTTCTACATATCTTCGTTTCTACTGTCTGCTTTATATTCCTA
CTCTTCTCTCTGGACACCTTGTGTCTTGTCTATTCCTGGAACTCTTCAAA
TGCTACAATGTCCTATTTATACTTCAAATGCTACAATGTCCTATTTATAC
TTCAAATGCTACAATGTCCTATTTATACTCTTCAAATGCTACAAACTCTA
CAGGCGGTTGATTTTTGCGTCGTAAGCCAAAATAAACTATTTAGTGGTAA
AATGTGGCAACCGCAGTAACCACAGCTAGACTACCGGTACTCGCACTCGC
AGCTTCAGATGGCATCCTTTTCCGTCATTTTGTTCCTGTTTCTGATACAG
TTACTTGTACGGTTGTTTGTGGTTTATCATGTGTATTTAAAACATATGAA
CTCGTCAAAACCCTCCGAACATCCATGCCTTGTTAGCACCATGAAAGGTG
TAGTCCAGGGGACTAACTATCGTCATATTTAAGATAAACATTAATTGGGT
CAACGGTTAATGTCGGGGATCCCAACATGGTCCCGTAAACTTACATTATT
CATGACGTCATCATATGGGGACTATGACGCCAAACCAGAGAACTATAACC
TAGAGAGTGAACATACGTTTCGATTGATTTCAGGTTGTAGGTGTTAAAAT
TATTTATCGTATGGGGATTATGACGTAAAGCCAAAGCCTAGAGAGTGAAC
AATGGTGGTTAGGAAGGGTGAAGTATTTTTATCACATGGTTATATTATAC
ATATATATATATGTAAGTTGATTTCGGATTGTATTCATTAGGAACGTGTA
AAGTCCTTTCTGGAGTCCGACCCTAGATAGGATAATTCTTATTTGCAAAC
TAAGGGGAACCAGCTGTTTCATCTAAAGGAAAGAAAGATAAAAAGACAAA
CAGGTGGGGTAAATAATTATGTACATGATTTTTTACCTAAATTGTTATTT
AATCTTTCAGATTGCTTCATGGTTACGTTGTTTCCGTTAACTGATCAGGC
GCGGGAATTAGAGCTGTTAAAGGCGCGAAAGGCCGAAGACGATTTCAAGC
GCCTCCAACACGCGAATAATAGACTCTACAAACAAGAGGAGGAAATGAAA
AGAAAGGCAGCGGCAGCTAGGGAACGAAGGTTGGAGGAAAAATAAATTAA
TTAAGATTGGTCGCAGGCTATCCTGTATGTCTAAGACTTCGTAGGTTTTG
TGGCACGTAGAAGGGTGTACTTCCGCTTACACGTATATCGTATCATGACA
GACATAAAATTATGCGTCCTGCCGGCAGAGATATGTAAACCCCTGCTGCG
CTTCACAAGGGTCCTTACATTTGTTGTGTAAAACCAGACAATCAAATGTT
CCACATTCAGCGAACGCACAAGCATCGCAAGACCACACCGCGGTTTATGT
CTTGTACACTCAACTATAGTCTGCCCATGAATACTCCTGGCGGAGTACTC
TTAAAGAATGAGGGAAGTTTCACCCCTGGACCACTCATTCCATATCGTAT
TGGACCGGGTCGATCATTTCTGTTGCGAATATACTTCGGTCGTGGCCTCT
AGTTGAAGCTTACTTGTTCTCGTGCACTTGTACTTCAAAGGACAGCGCAA
TGTCTCACATTGTCCGGGCCCTGACTATGTCCTTATCATCTTCAGCTACG
AGTATGACTTTAGGCATGACATTTGTGCCTCGCCGGTCGAATGCCTTTGA
ACTGTACTGCTGCGATTCGCGTTTCGATAGGGTACTTCTTGAAGATAGGG
AAAGCATTCTAGAGGCCATCAGGAGGGAAGAGGAGGCAGAGTTGGACAGG
TAGGTCATCTCCTGCTGCCTCTTCTCTCCCTCTAAAGCAATGTTGTGACT
TTAGTCAAACTCTGATCATTTGCTGTTTTACTCTCTTTTTGGCATTTGAA
TGAAGCAAAAGGAAAGCTTGTGCGTATTTCCATAGTTGAAAACTATATAC
TGGGGCTAGGTGCTGTCAGTCGACATTTCCTCCCACATGTGTTGCTTTTG
TCCTTTGTCCACCCCCTGAAGACATTTAAAGTTTGGGAAGCCCAGACAAA
TTGGTAGCTATATTGGGGGATAAGACGTCGCATGAGGGTGAAACTGCTCT
AGACGAGATCGGGAAAAATGTTTGCGCCACCTTTGGAAACGTAGATAGAA
AGAATTAGTCATCTTGGATCAATCATATAAGAACGATTATCTGTCTTGTA
ATGGACGCGCGGTCAAAGATATATTAGGTAATGCACGCAAACTCATCCAT
TTTTATTCCACCCCCGCTATCGTGCTTTCCGGTCTCTCTGGGGTCACAAA
CGTTCAACCCAAACACACACGCAAGGCGGGAGGCCCTCCGAGAGCTTCCG
TCAGAAAAAACAAAGCTCGCAATTCTTGAGGAGATATGGGCGAAGCAAGC
CCACCCGGCCGCTCGGGCCGCAACCCACGGCCGCCGTCGCTTGTGCTTGG
AAGAACTTGAAGAGCTGGTCTCACCGGAGGCCAGCGCTTCACCAGAGGCC
ACCACGAGTGGTGAGTCCGGCGAGGTCGGCAGGGCTTCCGAAGAGCCAAA
CGGCGTTGTCGGCGGGGGTGTCGGTGGAGTTGTCGGAGATTTTGGCGAGC
GGGGGGGTATCATCAGCGTAAGCAACATCGCAAGCGACAGCAGCAGCAGT
GGAAGCAGCGGGATGGGCAATGTCCGTCGAGTGAGCTCATCTAGCAGCTT
GGACAGCATGCTGAATGAGTGCAGAGAGCGTTGCGCCCGGAGGGGCACCA
GCGCTCTTGCGTTGACAGAGTCGGCCGATTTGAGCTCGGCGTCATTCACG
AGCCAATCAGCGACAGGGCTTGATGACGGTAGTGGCGGTGGCGGTGGGTT
TGTAGGCGACCTCAGCGTGAAGAGAAATAACCCGCGTCTCGACGATCTCA
ATCTCGACGGTAGGGAGGCTATCTACGACACTGCAGGCGTGTCGTCGGCC
CCGTCTTGGTCTGACACAAGCGTTATTGAGGCCAGGGGCGTTACAGCTGA
AGCGGCCGCGGTTCTGGCGGCGGCGGAGCGTAGCTTTGACAGCGAAGAGA
GCCTCGACGAGGCTGGAGCGGCAGCGGTGGCGTCGGCAGCAGCCTGGTCT
TCTTCCAAGGGCTCCGAAAGTCACGAGTCAGGTTTTCCTGTGCGTGCCCT
TGTGTTCCCCCCTACACCCTCGGAGAAAGAGCATGACGGGCCGAATGCGG
AAGCAAGATGTCGTGAAGCTGGAAATGGCCAAGTAGAACGGAGTATTAGC
GAGTCCGAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1855:3201..12909+

>mRNA_H-elongata_contig1855.5018.1 ID=mRNA_H-elongata_contig1855.5018.1|Name=mRNA_H-elongata_contig1855.5018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4122bp|location=Sequence derived from alignment at H-elongata_contig1855:3201..12909+ (Himanthalia elongata Himel1 dioecious)
ATGCAGCCATCTTCGCTGCAGCATTCTTTAGAAATGTCCAACACGGCAGG
CGGCTCTACGAATGGATCGAGCTTGGCATCTGGAGCAGAGCGGTTGGCTG
TGCTTGCGACTCCTCTCCGCAGGAGGGCGGCGTTGGGGCGTGGGCCTCAA
GTAGCCGTTACTCCACGTCAGATGCAGCCATCTTCGCTGCAGCATTCTTT
AGAAATGTCCAACACGGCAGGCGGCTCTACGAATGGATCGAGCTTGGCAT
CTGGAGCAGAGCGGTTGGCTGTGCTTGCGACTCCTCTCCGCAGGAGGGCG
GCGTTGGGGCGTGGGCCTCAAGTAGCCGTTACTCCACGTCAGGCCGCAAT
CTCTGCGCGGAAACAGGTGGAGGGTCAAAGAAGACGTGAGGCAGCGCTGT
TGAAGCAGCAGCGCGAGGAGGCCGCAATCTCTGCGCGGAAACAGGTGGAG
GGTCAAAGAAGACGTGAGGCAGCGCTGTTGAAGCAGCAGCGCGAGGAGAT
GATGAGCGCCGCAAAGGCTAAACAGGCGGCCGAATTTGTAGAGCAGCAGC
ATGCTATCAAGAAGCGCGCAGAAACGGCGCAACGTCAAAGGAAGAATGCA
GCGGCTGCCAAGAAGGCTGCCAAAGCAATCGACACTGCAGAACAGATGAT
GAGCGCCGCAAAGGCTAAACAGGCGGCCGAATTTGTAGAGCAGCAGCATG
CTATCAAGAAGCGCGCAGAAACGGCGCAACGTCAAAGGAAGAATGCAGCG
GCTGCCAAGAAGGCTGCCAAAGCAATCGACACTGCAGAACAGGCGAAGGA
ATTTCAGGCAAAAATGGAGGAGTCGCGTGATCTCAAGGAGCGCCTAGTAA
ATGAGGAGAAGGAGAGAAGGCGAAACATTCTAGCCCACAAGGCGAAGGAA
TTTCAGGCAAAAATGGAGGAGTCGCGTGATCTCAAGGAGCGCCTAGTAAA
TGAGGAGAAGGAGAGAAGGCGAAACATTCTAGCCCACAAGAATGTCGAGT
GGTCGAAGGAAAGAAGTCTAAAGCGGAGGCAAGAACAGGAACGTCAAGCC
GAAGAGAGGATGATAATGGAAGGACGCACGAATGTCGAGTGGTCGAAGGA
AAGAAGTCTAAAGCGGAGGCAAGAACAGGAACGTCAAGCCGAAGAGAGGA
TGATAATGGAAGGACGCACGGTTTTCCTCGAGGCAAAGGAGAAGATAAAG
GAAGAGCGGAGACTAATTGCAAAGCGTGAACTTCAGTGGAGGGTGAACAC
GCTCACCTCCGAAAAGACGCGGAAGACTCGGGTGGGGGTGCGTGCAGCTA
ACGTTTTCCTCGAGGCAAAGGAGAAGATAAAGGAAGAGCGGAGACTAATT
GCAAAGCGTGAACTTCAGTGGAGGGTGAACACGCTCACCTCCGAAAAGAC
GCGGAAGACTCGGGTGGGGGTGCGTGCAGCTAACGAGGCGCGCAAGCTGC
GTACGATTCATGCGCAGGACCAAGCCGCTCTGGAAAACGCGGCTGATGAA
GAAAAACGTCTCCGCAGAGAGTCCGCGCAATGGAGGAGGCGCGCAAGCTG
CGTACGATTCATGCGCAGGACCAAGCCGCTCTGGAAAACGCGGCTGATGA
AGAAAAACGTCTCCGCAGAGAGTCCGCGCAATGGAGGAGAAACGAAATGA
TGCTGGACGTGGAAATCAAGCGTAGCGTGGAAAATAAAGCCCTCGACGCC
AAGAAGCTGGCTATTGAATTCTGCCTCCGCGATGAGGACCGCAAGGAGAA
ACGAAATGATGCTGGACGTGGAAATCAAGCGTAGCGTGGAAAATAAAGCC
CTCGACGCCAAGAAGCTGGCTATTGAATTCTGCCTCCGCGATGAGGACCG
CAAGGCGCGGGAATTAGAGCTGTTAAAGGCGCGAAAGGCCGAAGACGATT
TCAAGCGCCTCCAACACGCGAATAATAGACTCTACAAACAAGAGGAGGAA
ATGAAAAGAAAGGCAGCGGCAGCTAGGGAACGAAGGCGCGGGAATTAGAG
CTGTTAAAGGCGCGAAAGGCCGAAGACGATTTCAAGCGCCTCCAACACGC
GAATAATAGACTCTACAAACAAGAGGAGGAAATGAAAAGAAAGGCAGCGG
CAGCTAGGGAACGAAGGGTACTTCTTGAAGATAGGGAAAGCATTCTAGAG
GCCATCAGGAGGGAAGAGGAGGCAGAGTTGGACAGGGTACTTCTTGAAGA
TAGGGAAAGCATTCTAGAGGCCATCAGGAGGGAAGAGGAGGCAGAGTTGG
ACAGGCGGGAGGCCCTCCGAGAGCTTCCGTCAGAAAAAACAAAGCTCGCA
ATTCTTGAGGAGATATGGGCGAAGCAAGCCCACCCGGCCGCTCGGGCCGC
AACCCACGGCCGCCGTCGCTTGTGCTTGGAAGAACTTGAAGAGCTGGTCT
CACCGGAGGCCAGCGCTTCACCAGAGGCCACCACGAGTGGTGAGTCCGGC
GAGGTCGGCAGGGCTTCCGAAGAGCCAAACGGCGTTGTCGGCGGGGGTGT
CGGTGGAGTTGTCGGAGATTTTGGCGAGCGGGGGGGTATCATCAGCGTAA
GCAACATCGCAAGCGACAGCAGCAGCAGTGGAAGCAGCGGGATGGGCAAT
GTCCGTCGAGTGAGCTCATCTAGCAGCTTGGACAGCATGCTGAATGAGTG
CAGAGAGCGTTGCGCCCGGAGGGGCACCAGCGCTCTTGCGTTGACAGAGT
CGGCCGATTTGAGCTCGGCGTCATTCACGAGCCAATCAGCGACAGGGCTT
GATGACGGTAGTGGCGGTGGCGGTGGGTTTGTAGGCGACCTCAGCGTGAA
GAGAAATAACCCGCGTCTCGACGATCTCAATCTCGACGGTAGGGAGGCTA
TCTACGACACTGCAGGCGTGTCGTCGGCCCCGTCTTGGTCTGACACAAGC
GTTATTGAGGCCAGGGGCGTTACAGCTGAAGCGGCCGCGGTTCTGGCGGC
GGCGGAGCGTAGCTTTGACAGCGAAGAGAGCCTCGACGAGGCTGGAGCGG
CAGCGGTGGCGTCGGCAGCAGCCTGGTCTTCTTCCAAGGGCTCCGAAAGT
CACGAGTCAGGTTTTCCTGTGCGTGCCCTTGTGTTCCCCCCTACACCCTC
GGAGAAAGAGCATGACGGGCCGAATGCGGAAGCAAGATGTCGTGAAGCTG
GAAATGGCCAAGTAGAACGGAGTATTAGCGAGTCCGAAGCGGGAGGCCCT
CCGAGAGCTTCCGTCAGAAAAAACAAAGCTCGCAATTCTTGAGGAGATAT
GGGCGAAGCAAGCCCACCCGGCCGCTCGGGCCGCAACCCACGGCCGCCGT
CGCTTGTGCTTGGAAGAACTTGAAGAGCTGGTCTCACCGGAGGCCAGCGC
TTCACCAGAGGCCACCACGAGTGGTGAGTCCGGCGAGGTCGGCAGGGCTT
CCGAAGAGCCAAACGGCGTTGTCGGCGGGGGTGTCGGTGGAGTTGTCGGA
GATTTTGGCGAGCGGGGGGGTATCATCAGCGTAAGCAACATCGCAAGCGA
CAGCAGCAGCAGTGGAAGCAGCGGGATGGGCAATGTCCGTCGAGTGAGCT
CATCTAGCAGCTTGGACAGCATGCTGAATGAGTGCAGAGAGCGTTGCGCC
CGGAGGGGCACCAGCGCTCTTGCGTTGACAGAGTCGGCCGATTTGAGCTC
GGCGTCATTCACGAGCCAATCAGCGACAGGGCTTGATGACGGTAGTGGCG
GTGGCGGTGGGTTTGTAGGCGACCTCAGCGTGAAGAGAAATAACCCGCGT
CTCGACGATCTCAATCTCGACGGTAGGGAGGCTATCTACGACACTGCAGG
CGTGTCGTCGGCCCCGTCTTGGTCTGACACAAGCGTTATTGAGGCCAGGG
GCGTTACAGCTGAAGCGGCCGCGGTTCTGGCGGCGGCGGAGCGTAGCTTT
GACAGCGAAGAGAGCCTCGACGAGGCTGGAGCGGCAGCGGTGGCGTCGGC
AGCAGCCTGGTCTTCTTCCAAGGGCTCCGAAAGTCACGAGTCAGGTTTTC
CTGTGCGTGCCCTTGTGTTCCCCCCTACACCCTCGGAGAAAGAGCATGAC
GGGCCGAATGCGGAAGCAAGATGTCGTGAAGCTGGAAATGGCCAAGTAGA
ACGGAGTATTAGCGAGTCCGAA
back to top