mRNA_H-elongata_contig185387.5009.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185387.5009.1
Unique NamemRNA_H-elongata_contig185387.5009.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Match: D7G688_ECTSI (ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G688_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.730e-21
Identity = 47/52 (90.38%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPIVA 156
            MAYIPLDEESKVKGKAAIDG+GSRLGKSGASF+QQGL++AFGNILNAAP+VA
Sbjct:  416 MAYIPLDEESKVKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVA 467
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BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Match: A0A7S2P7Y9_9STRA (ADP,ATP carrier protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7Y9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.080e-19
Identity = 43/51 (84.31%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPIV 153
            MAYIPLDEESKVKGKAAID +GSRLGKSGASF+QQGL++AFGNI+NAAP++
Sbjct:  419 MAYIPLDEESKVKGKAAIDVLGSRLGKSGASFVQQGLVLAFGNIINAAPVI 469
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BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Match: A0A7S2I3P2_9STRA (ADP,ATP carrier protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I3P2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.320e-18
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPIV 153
            MAYIPLDEESKVKGKAAID +GSR+GKSGAS IQQGL++ FGNI+NA+P+V
Sbjct:   77 MAYIPLDEESKVKGKAAIDVLGSRVGKSGASLIQQGLVLLFGNIINASPMV 127
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BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Match: A0A7S1E6S4_9STRA (ADP,ATP carrier protein (Fragment) n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E6S4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.200e-18
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPIVA 156
            MAYIPLDEESKVKGKAAID +GSR+GKSG SFIQQGL+  FG+I++AAP+VA
Sbjct:   79 MAYIPLDEESKVKGKAAIDVLGSRVGKSGGSFIQQGLVFIFGDIISAAPVVA 130
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BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Match: K0SKJ7_THAOC (ADP,ATP carrier protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKJ7_THAOC)

HSP 1 Score: 79.3 bits (194), Expect = 3.010e-18
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPIVA 156
            MAYIPLDE+SKVKGKAAI+ +GSR+GKSG SF+QQGL++ FG+I+NAAP +A
Sbjct:    1 MAYIPLDEDSKVKGKAAIEVLGSRIGKSGGSFVQQGLVLLFGSIINAAPALA 52
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BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Match: A0A1Z5KN04_FISSO (ADP,ATP carrier protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN04_FISSO)

HSP 1 Score: 85.1 bits (209), Expect = 4.980e-18
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPIV 153
            MAYIPLD+ESKVKGKAAID +GSRLGKSG SFIQQGL++ FGNI+NAAP+V
Sbjct:  476 MAYIPLDDESKVKGKAAIDVLGSRLGKSGGSFIQQGLVLIFGNIINAAPVV 526
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BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Match: A0A7S4SQN2_9STRA (ADP,ATP carrier protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SQN2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.380e-17
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPIV 153
            MAYIPLDEESKVKGKAAID +GSR+GKSGAS  QQGL+V FGNI++A+P V
Sbjct:   80 MAYIPLDEESKVKGKAAIDVLGSRVGKSGASLFQQGLVVIFGNIIDASPAV 130
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BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Match: A0A7R9WNG8_9STRA (ADP,ATP carrier protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNG8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.570e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPIVA 156
            MAYIPLD+ESK KGKAAID +GSR+GKSG S IQQGL+  FGNI++AAP VA
Sbjct:   28 MAYIPLDDESKTKGKAAIDVLGSRIGKSGGSLIQQGLVFMFGNIISAAPAVA 79
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BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Match: A0A7S2HZ29_9STRA (ADP,ATP carrier protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HZ29_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.600e-17
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPIVA 156
            MAYIPLDEESKVKGKAAID +GSR+GKSG S IQQGL+  FG+IL+AAP V+
Sbjct:   67 MAYIPLDEESKVKGKAAIDVLGSRIGKSGGSLIQQGLVFIFGDILSAAPAVS 118
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BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Match: B7FWL8_PHATC (ADP,ATP carrier protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWL8_PHATC)

HSP 1 Score: 81.6 bits (200), Expect = 8.260e-17
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPIV 153
            MAYIPLD+ESKVKGKAAID +GSR+GKSG S IQQGL+  FGNI+NAAP+V
Sbjct:  483 MAYIPLDDESKVKGKAAIDVLGSRIGKSGGSLIQQGLVFVFGNIINAAPVV 533
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185387.5009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G688_ECTSI2.730e-2190.38ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2P7Y9_9STRA2.080e-1984.31ADP,ATP carrier protein n=1 Tax=Leptocylindrus dan... [more]
A0A7S2I3P2_9STRA1.320e-1880.39ADP,ATP carrier protein (Fragment) n=1 Tax=Helicot... [more]
A0A7S1E6S4_9STRA2.200e-1878.85ADP,ATP carrier protein (Fragment) n=2 Tax=Thalass... [more]
K0SKJ7_THAOC3.010e-1873.08ADP,ATP carrier protein n=1 Tax=Thalassiosira ocea... [more]
A0A1Z5KN04_FISSO4.980e-1882.35ADP,ATP carrier protein n=2 Tax=Fistulifera solari... [more]
A0A7S4SQN2_9STRA2.380e-1778.43ADP,ATP carrier protein n=1 Tax=Ditylum brightwell... [more]
A0A7R9WNG8_9STRA5.570e-1775.00ADP,ATP carrier protein n=1 Tax=Craspedostauros au... [more]
A0A7S2HZ29_9STRA5.600e-1776.92ADP,ATP carrier protein n=1 Tax=Helicotheca tamesi... [more]
B7FWL8_PHATC8.260e-1778.43ADP,ATP carrier protein n=2 Tax=Phaeodactylum tric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185387contigH-elongata_contig185387:113..660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue5.9e-18
Seed eggNOG ortholog2880.D7G688
Preferred nameNTT2
EggNOG free text desc.TLC ATP/ADP transporter
EggNOG OGs2RM9E@2759,COG3202@1
Ec32 ortholog descriptionADP-ATP translocase
Ec32 orthologEc-10_000970.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.224808-CDS-H-elongata_contig185387:112..2351622930060.224808-CDS-H-elongata_contig185387:112..235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185387 113..235 -
1691679265.437256-CDS-H-elongata_contig185387:112..2351691679265.437256-CDS-H-elongata_contig185387:112..235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185387 113..235 -
1622930060.2518892-CDS-H-elongata_contig185387:627..6601622930060.2518892-CDS-H-elongata_contig185387:627..660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185387 628..660 -
1691679265.4490569-CDS-H-elongata_contig185387:627..6601691679265.4490569-CDS-H-elongata_contig185387:627..660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185387 628..660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185387.5009.1prot_H-elongata_contig185387.5009.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185387 113..660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185387.5009.1

>prot_H-elongata_contig185387.5009.1 ID=prot_H-elongata_contig185387.5009.1|Name=mRNA_H-elongata_contig185387.5009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MAYIPLDEESKVKGKAAIDGVGSRLGKSGASFIQQGLIVAFGNILNAAPI
VA
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mRNA from alignment at H-elongata_contig185387:113..660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185387.5009.1 ID=mRNA_H-elongata_contig185387.5009.1|Name=mRNA_H-elongata_contig185387.5009.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=548bp|location=Sequence derived from alignment at H-elongata_contig185387:113..660- (Himanthalia elongata Himel1 dioecious)
ATGGCTTACATTCCCCTGGATGAGGAGTCCAAGGTGCGCGCGCACATGTT
GGGGCGGGGGGGCGGGGCTGCATGAACTAGAGGATGCGATGTTGAGGGCC
GAACGGTGGCATTACCAGCATATTTTATGGCGTCATCAGCGTCTCACTTT
GTGATACCGATCATTATGACGTTACCCTCATCTTGGTGTCATCAGCGTAC
AATATGACGTCACCCCAAGCGGACGCTGGTGGCGCCGCTAGTCGATCACG
CCAGGCCTTTCCTGTGACGTACTTCGACATTATCTCGCACGCTCGGCTCA
CCCGTTCGGTTGAATCACTTGCCACTAGTACCCCTCGTATTTTGCGATCT
TGCTTGACGATTGGCGCGACACGTTGGTTGTGGCGTTTGCTCGATGACCA
TCACCGTTCTGCAATGACGCGACAGGTGAAGGGGAAAGCGGCTATCGACG
GTGTAGGGTCGCGCCTGGGCAAGTCCGGGGCGTCTTTCATACAGCAGGGG
CTGATCGTCGCGTTCGGAAACATCCTTAACGCCGCGCCCATCGTCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig185387:113..660-

>mRNA_H-elongata_contig185387.5009.1 ID=mRNA_H-elongata_contig185387.5009.1|Name=mRNA_H-elongata_contig185387.5009.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig185387:113..660- (Himanthalia elongata Himel1 dioecious)
ATGGCTTACATTCCCCTGGATGAGGAGTCCAAGATGGCTTACATTCCCCT
GGATGAGGAGTCCAAGGTGAAGGGGAAAGCGGCTATCGACGGTGTAGGGT
CGCGCCTGGGCAAGTCCGGGGCGTCTTTCATACAGCAGGGGCTGATCGTC
GCGTTCGGAAACATCCTTAACGCCGCGCCCATCGTCGCAGTGAAGGGGAA
AGCGGCTATCGACGGTGTAGGGTCGCGCCTGGGCAAGTCCGGGGCGTCTT
TCATACAGCAGGGGCTGATCGTCGCGTTCGGAAACATCCTTAACGCCGCG
CCCATCGTCGCA
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