prot_H-elongata_contig99301.17267.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig99301.17267.1
Unique Nameprot_H-elongata_contig99301.17267.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length50
Homology
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BLAST of mRNA_H-elongata_contig99301.17267.1 vs. uniprot
Match: A0A6H5JKZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 6.060e-23
Identity = 39/49 (79.59%), Postives = 47/49 (95.92%), Query Frame = 0 
Query:    2 SLRGLDAFPNVQTLILDSNGLLSLPMDCPWVPSLETIWLCNNDIENLDG 50
            +LRGLDAFP+VQTL+LDSNGLLSLPMDCPW P++E +WLCNN++ENLDG
Sbjct:  180 TLRGLDAFPHVQTLVLDSNGLLSLPMDCPWCPAVEALWLCNNEVENLDG 228
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BLAST of mRNA_H-elongata_contig99301.17267.1 vs. uniprot
Match: D8LK63_ECTSI (Actin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK63_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 8.170e-15
Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 0 
Query:   14 TLILDSNGLLSLPMDCPWVPSLETIWLCNNDIENLDG 50
            TL+LDSNGLLSLPMDCPW P++E +WLCNN++ENLDG
Sbjct:  116 TLVLDSNGLLSLPMDCPWCPAVEALWLCNNEVENLDG 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99301.17267.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKZ5_9PHAE6.060e-2379.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK63_ECTSI8.170e-1578.38Actin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..50
e-value: 6.5E-7
score: 30.4
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 3..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99301contigH-elongata_contig99301:454..603 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99301.17267.1mRNA_H-elongata_contig99301.17267.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig99301 454..603 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig99301.17267.1 ID=prot_H-elongata_contig99301.17267.1|Name=mRNA_H-elongata_contig99301.17267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
CSLRGLDAFPNVQTLILDSNGLLSLPMDCPWVPSLETIWLCNNDIENLDG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf