prot_H-elongata_contig9918.17257.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9918.17257.1
Unique Nameprot_H-elongata_contig9918.17257.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length905
Homology
BLAST of mRNA_H-elongata_contig9918.17257.1 vs. uniprot
Match: D8LNR4_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR4_ECTSI)

HSP 1 Score: 643 bits (1659), Expect = 7.940e-213
Identity = 464/988 (46.96%), Postives = 559/988 (56.58%), Query Frame = 0
Query:    1 MKERRKEVKRIGRLRAERECRNRSLKAEELKDVLEDSD--ADDEH-----APSVTSTTPVTEGSVDLPEGKLPTTIMSTCREDPPREQSVSGKSSSSFVAETSAVGCNGSQAPVS-HVGHGESGIRAGEHGRACFVSALAPDLLLQCAEFLGDSRSLTRVREVSLGWLLVLDDREAGRRLWRPLFYRLRASGTIHAATNTRGQRRLAPKFYNLGTLPTTGDGARLAWIGDG--SDVSTAGPTQY----GVDTPSLSSFPGVCARPPSIRRMDTAQRLSSSCPVCGLTQREGYVGNECEMCASSLVLVDNLRESSAAPPRVAYTRVQLSGSCGTSSPLE-PLPTRLSE----LDAASTSPRTPSLS--------SPPSVAARGG-----SSGGFPWNRGGARAGEEADRDIDMDVDWHFLVKRLAVEKRVAAGWGSLHQGWVWLQGALQAMLYRRLGNELPSPCGA--------PPSMAGLSRLEGSSRFSLSGESA--------------------ASCSVGSEGPGDLEPRITRAARKLATKKWVVLYDSIKAMFMLQAEGIARGVVFEALAAGA---ALQSAGKR---AEAWRVSEVAELEGLQRCVAAWEAYKDWCEEVDTYCEVLNEYISSERYRTAGAGCGRGDHTPFVRDAALLSFRHSFALNVQVCTSLRKAIFKGMSSVQVEATGTHGCN-GGVHNTPAVGGDGVTATGNDRASPVDLEDLEESSSLFTDLELMEDSRAIDFSVRSFSRPDARARASG---GVMSRPVGGGSSKRARGDVGAFRTGTLG-CLVGRSKPAHYYDWFVSKLEGKEAGIIRGDIDARGKSVDRQCEGGTSAISYINRMEKERADSRSRSASLEG-LLGLLRDMVEELDVPDDELSKDRRTQGAMRRLLLLPIKRWQA-----------AMAEVSAEDPRNVMLMAGLSPSPGREGFHRLREGAAGRR-KGNPSASTFRKDAGKSWEHLSTFFG 904
            ++ERR+E +++ RL+  R CR+RSLK E LKDVLEDS    +D+H      P+  +T PV                     ED   E  VS  S+S   +   A    G    +  H G           G  C +S L PDLLLQCAE+LGD+RSL RVREV LGWLL LDDREAG RLWRPLFYRLRASG+IH AT+  GQ+    K Y+LGT P    G+  +  G+G  + VST  P+Q         P+L++  G      S      A  ++SSC VCGL QR+GY G +CEMCAS+LVLV   RES A P R+AYTRV LSG  G+ S    P   R  +    L   + S R+P L         +P    A G      S G    + GGA+  EE        VDWHFLVKRLA EKR+A GWGSL  GWVWLQ  LQ ML RR G+E   P  +        PP    L+ L  +S     G ++                     + +  +   G+ +PRI R  RKL+TKKWVVLYDS+KA F LQAEGIAR +V  A +A A   A +  GK    A   R    A+LEGL+ CVAAWEAYKDWCEEVD YCE+LNE+IS+ERYRTAGAGCGRGD+TP++RD AL+SFRHSFALNVQVC  LR AI KGM +   ++    G         P  GG       +D A         ++  LFTDLELMEDSRAIDFSVRSFS P           G        G+         A R  +     VG S+P +YYDWF+SKLEGKEAGIIRGDIDARGKSV R    G  + +         A    ++A+ +  LL  + DMVEELDVPDD LSK+R TQGAMRRLLLLP+KRWQA           A  + +  DPRN +LMAGLSP+PG+EGFHRLR GAAGRR KG P  S+  KDAGKSWEHLST FG
Sbjct:  152 LRERREEAEKLSRLQTARRCRDRSLKEEALKDVLEDSSDSENDDHNRRGEGPASHTTKPV---------------------ED---ETPVSTASASETTSAAPADDNTGRTKTLQQHPGT----------GGGCVISILPPDLLLQCAEYLGDARSLCRVREVGLGWLLALDDREAGSRLWRPLFYRLRASGSIHKATDATGQQNRQLKVYDLGTRPPN-RGSSASAFGNGLTAGVSTPSPSQKTRLSSGGPPALAAGKGTPWSSGS--GSAAAAVVASSCVVCGLIQRDGYSGKDCEMCASALVLVRG-RESPATP-RLAYTRVNLSGGGGSCSSFSSPTTMRWQQHPGCLVTGAGSSRSPDLRQKGRVGGITPAGATADGAREAERSIGSCNSSGGGAQGLEEEFGGGARSVDWHFLVKRLAEEKRIANGWGSLQHGWVWLQRELQNMLRRRRGHEQLGPAPSLTAAVPTHPPPQVELAALSSASGVGTRGGASHPGAQQXXXXXXXXXXXXXTPTAAGRAAADGEPDPRIARLVRKLSTKKWVVLYDSLKATFTLQAEGIAREIVLAAASAAAVAAAREDQGKGIVDACGRRPGASADLEGLRGCVAAWEAYKDWCEEVDMYCELLNEHISAERYRTAGAGCGRGDNTPYIRDTALISFRHSFALNVQVCAMLRTAISKGMPTACTDSFSVTGPPLEAARYEPGRGGAKQDNPRSDTAKSA----AGDADELFTDLELMEDSRAIDFSVRSFSGPGGXXXXXXXXXGSRGASTISGACXXXXXXXXALRAASASRSSVGSSRPGNYYDWFLSKLEGKEAGIIRGDIDARGKSVVRSSPPGEGSGAAGG------AGCALQAAATQAELLEAVGDMVEELDVPDDALSKERHTQGAMRRLLLLPVKRWQAXXXXXXXXXXXARNDNAEGDPRN-LLMAGLSPAPGKEGFHRLRGGAAGRRRKGAPPMSSLGKDAGKSWEHLSTLFG 1089          
BLAST of mRNA_H-elongata_contig9918.17257.1 vs. uniprot
Match: A0A835YZ22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ22_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.840e-31
Identity = 108/318 (33.96%), Postives = 149/318 (46.86%), Query Frame = 0
Query:  539 LQRCVAAWEAYKDWCEEVDTYCEVLNEYISSERYRTAGAGCGRGDHTPFVRDAALLSFRHSFALNVQVCTSLRKAIFKGMSSVQVEATGTHGCNGGVHNTPAVGGDGVTATGNDR---------ASPVDLEDLEESSSLFTDLELMEDSRAIDFSVRSFSRPDARARASGGVMSRPVGGGSSKRARGDVGAFRTGTLGCLVGRSKPAHYYDWFVSKLEGKEAGIIRGDIDARGKSVDRQCEGGTSAISYINRMEKERADSRSRSASLEGLLGLLRDMVEELDVPDDELSKDRRTQGAMRRLLLLPIKRWQAAMAEVSA 847
            L+  + AW+AY+DWCEEVD            ER              PF+RDAALL+FR++F +NVQVC ++  A+ +  ++                    +GG     + +D          A+  D     E S LFTDLEL+ED RA++FSV+                        S+R+ G     +T T           HYYDW + ++EG+   I+RG +DARG +      GG              A S +   S + LL  L   VEELDVPDD+LS DR TQG+MRR +LLP+ RW+AAM E +A
Sbjct:    7 LRGVLRAWDAYRDWCEEVD------------ER--------------PFIRDAALLAFRNNFVMNVQVCAAV-SAVAQHAAAXXXXXXXXXXXXXXXXXXRRMGGRKRACSASDGGSGDMGVGGAAAGDAGTNNEDSMLFTDLELVEDCRALNFSVQH-----------------------SRRSTGSERGLKTSTS---TAERHHRHYYDWILERVEGRAEDILRGTVDARGIA------GGVKL-----------ALSTAAPESRQQLLSRLLSAVEELDVPDDDLSGDRHTQGSMRRAMLLPLLRWRAAMDECAA 254          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9918.17257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNR4_ECTSI7.940e-21346.96RanBP2-type domain-containing protein n=2 Tax=Ecto... [more]
A0A835YZ22_9STRA1.840e-3133.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9918contigH-elongata_contig9918:3407..8405 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9918.17257.1mRNA_H-elongata_contig9918.17257.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9918 2332..9359 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9918.17257.1 ID=prot_H-elongata_contig9918.17257.1|Name=mRNA_H-elongata_contig9918.17257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=905bp
MKERRKEVKRIGRLRAERECRNRSLKAEELKDVLEDSDADDEHAPSVTST
TPVTEGSVDLPEGKLPTTIMSTCREDPPREQSVSGKSSSSFVAETSAVGC
NGSQAPVSHVGHGESGIRAGEHGRACFVSALAPDLLLQCAEFLGDSRSLT
RVREVSLGWLLVLDDREAGRRLWRPLFYRLRASGTIHAATNTRGQRRLAP
KFYNLGTLPTTGDGARLAWIGDGSDVSTAGPTQYGVDTPSLSSFPGVCAR
PPSIRRMDTAQRLSSSCPVCGLTQREGYVGNECEMCASSLVLVDNLRESS
AAPPRVAYTRVQLSGSCGTSSPLEPLPTRLSELDAASTSPRTPSLSSPPS
VAARGGSSGGFPWNRGGARAGEEADRDIDMDVDWHFLVKRLAVEKRVAAG
WGSLHQGWVWLQGALQAMLYRRLGNELPSPCGAPPSMAGLSRLEGSSRFS
LSGESAASCSVGSEGPGDLEPRITRAARKLATKKWVVLYDSIKAMFMLQA
EGIARGVVFEALAAGAALQSAGKRAEAWRVSEVAELEGLQRCVAAWEAYK
DWCEEVDTYCEVLNEYISSERYRTAGAGCGRGDHTPFVRDAALLSFRHSF
ALNVQVCTSLRKAIFKGMSSVQVEATGTHGCNGGVHNTPAVGGDGVTATG
NDRASPVDLEDLEESSSLFTDLELMEDSRAIDFSVRSFSRPDARARASGG
VMSRPVGGGSSKRARGDVGAFRTGTLGCLVGRSKPAHYYDWFVSKLEGKE
AGIIRGDIDARGKSVDRQCEGGTSAISYINRMEKERADSRSRSASLEGLL
GLLRDMVEELDVPDDELSKDRRTQGAMRRLLLLPIKRWQAAMAEVSAEDP
RNVMLMAGLSPSPGREGFHRLREGAAGRRKGNPSASTFRKDAGKSWEHLS
TFFG*
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