prot_H-elongata_contig9885.17228.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9885.17228.1
Unique Nameprot_H-elongata_contig9885.17228.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length285
Homology
BLAST of mRNA_H-elongata_contig9885.17228.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 3.400e-77
Identity = 160/274 (58.39%), Postives = 185/274 (67.52%), Query Frame = 0
Query:   21 GDAVTLPAEVVGEPQHMDQLFDMLEIDLGMXXXXXXX-----------RGMVGENHANLRAEINASACRVGTLSKRQQEDTAAAGPREAVDGVQQSHDEYCGSNAE---VDPG-HFNASLWHILQSLPVDLTVVRNLRSLRKAETSWDALLDTSRCYRFVYALQVVDAFCTSRLNLSGPKEVEALLSWSLRFCRLGGVVHLVSSLKVVLEAVGVVGEAGAGCPDASRLEAWTLSAALVARVLHRLLQLDAAYFKGCGPEERWPPAALFHDSLLH 279
            G + T  AE VGEPQHMDQLFDMLE+DLGM  XXXXX           R  +  N A    E    A   G+   R     AA   R A     QS   + G  A    ++P   +NASLWHILQ+LP+D TV+R+LRSL KAE+SWDALLD SRCYRFVYALQVVDAFCTSR NLSGPK VE++L+W LRFCRLGGV HLV++L+VV   V  V EAG G  +ASRLEAWTLSAAL++RVLHRL QL+A+YF+ C P ERW PA LFH S  H
Sbjct: 1749 GVSATAAAETVGEPQHMDQLFDMLELDLGMDGXXXXXXXXXXXPGGDSRRGLPPNTAVASHEPGGEARAWGSGGLRDGGQCAAERRRGAGSVAGQSKGAWRGGAARGGGIEPAVDYNASLWHILQALPMDPTVLRDLRSLHKAESSWDALLDPSRCYRFVYALQVVDAFCTSRANLSGPKSVESVLAWVLRFCRLGGVEHLVAALEVVRRKVQAVNEAG-GAAEASRLEAWTLSAALLSRVLHRLFQLNASYFESCPPGERWSPATLFHASPPH 2021          
BLAST of mRNA_H-elongata_contig9885.17228.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 4.100e-74
Identity = 156/279 (55.91%), Postives = 180/279 (64.52%), Query Frame = 0
Query:   21 GDAVTLPAEVVGEPQHMDQLFDMLEIDLGMXXXXXXX------------RGMVGENHANLRAEINASACRVGTLSKRQQEDTAAAGPREAVDGVQQSHDEYCGSNAEVDPG--------HFNASLWHILQSLPVDLTVVRNLRSLRKAETSWDALLDTSRCYRFVYALQVVDAFCTSRLNLSGPKEVEALLSWSLRFCRLGGVVHLVSSLKVVLEAVGVVGEAGAGCPDASRLEAWTLSAALVARVLHRLLQLDAAYFKGCGPEERWPPAALFHDSLLH 279
            G + T  AE VGEPQHM+QLFDMLE+DLGM   XXXX            R  +  N A    E        G+ S R     AA     A     QS   + G       G         +NASLWHILQ+LP+D TV+R+LRSL KAE+SWDALLD SRCYRFVYALQVVDAFCTSR NLSGPK VE++L+W LRFCRLGGV HLV++L+VV   V  V EAG G  +ASRLEAWTLSAAL++RVLHRL QL+A+YF+ C P ERW PA LFH S  H
Sbjct:  730 GVSATAAAETVGEPQHMNQLFDMLELDLGMDGGXXXXXXXXXXSAGGDSRRGLPPNTAVAWHEPGGEGRAWGSGSLRDGVQCAAERRTGAGSMAGQSRGAWRGGXXXXGGGGGGVEPTVDYNASLWHILQALPMDPTVLRDLRSLHKAESSWDALLDPSRCYRFVYALQVVDAFCTSRTNLSGPKSVESVLAWVLRFCRLGGVEHLVTALEVVRGKVQAVNEAG-GAAEASRLEAWTLSAALLSRVLHRLFQLNASYFESCPPGERWSPATLFHASPPH 1007          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9885.17228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU88_ECTSI3.400e-7758.39Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE4.100e-7455.91USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9885contigH-elongata_contig9885:3782..7013 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9885.17228.1mRNA_H-elongata_contig9885.17228.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9885 3781..7013 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9885.17228.1 ID=prot_H-elongata_contig9885.17228.1|Name=mRNA_H-elongata_contig9885.17228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp
VGHGESANGAAAVLGGGGAAGDAVTLPAEVVGEPQHMDQLFDMLEIDLGM
NMGMGLGRGMVGENHANLRAEINASACRVGTLSKRQQEDTAAAGPREAVD
GVQQSHDEYCGSNAEVDPGHFNASLWHILQSLPVDLTVVRNLRSLRKAET
SWDALLDTSRCYRFVYALQVVDAFCTSRLNLSGPKEVEALLSWSLRFCRL
GGVVHLVSSLKVVLEAVGVVGEAGAGCPDASRLEAWTLSAALVARVLHRL
LQLDAAYFKGCGPEERWPPAALFHDSLLHQQKQQQ
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