prot_H-elongata_contig98750.17215.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig98750.17215.1
Unique Nameprot_H-elongata_contig98750.17215.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length55
Homology
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Match: A0A835YTP2_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.190e-22
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNGRPVRM 55
            +F EAG V+NIR V DHETG PKGYAFVE+ED+ATALSAIRNLNG+ECNGR +R+
Sbjct:   16 IFSEAGRVVNIRSVVDHETGKPKGYAFVEFEDSATALSAIRNLNGYECNGRQLRV 70          
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Match: A0A6H5J8E7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8E7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 9.130e-22
Identity = 42/55 (76.36%), Postives = 51/55 (92.73%), Query Frame = 0
Query:    1 LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNGRPVRM 55
            +F EAGG+++IRLVSD ETG PKG+AFVEYEDAATALSAIRNLNG++CNGR +R+
Sbjct:   28 IFSEAGGIVSIRLVSDFETGKPKGFAFVEYEDAATALSAIRNLNGYDCNGRLLRV 82          
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Match: D8LMG1_ECTSI (Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG1_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.910e-20
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 0
Query:    1 LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNGRPVRM 55
            +F EAGG+++IRLV D ETG PKG+AFVEYEDAATALSAIRNLNG++CNGR +R+
Sbjct:   28 IFSEAGGIVSIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYDCNGRLLRV 82          
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Match: A0A0W8CP19_PHYNI (Cleavage stimulation factor subunit 2 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CP19_PHYNI)

HSP 1 Score: 82.4 bits (202), Expect = 1.290e-17
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNGRPVRM 55
            +F EAG V+N RLV+D ETG PKGY F EY D ATALSA+RNLNG+E NGR +R+
Sbjct:   32 IFSEAGSVMNFRLVTDRETGKPKGYGFCEYADGATALSAMRNLNGYEINGRNLRV 86          
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Match: A0A3P7NQM4_9BILA (RRM domain-containing protein n=2 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A3P7NQM4_9BILA)

HSP 1 Score: 77.8 bits (190), Expect = 1.860e-17
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0
Query:    1 LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNGRPVRM 55
            +F + G V+++RLV D +TG PKGY F EY DA TA SAIRNLNGFE NGRP+R+
Sbjct:    4 VFAQVGPVVHLRLVHDRDTGKPKGYGFCEYSDAQTAESAIRNLNGFELNGRPLRV 58          
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Match: A0A8J5IYV3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IYV3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.220e-17
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNGRPVRM 55
            +F EAG V+N RLV+D ETG PKGY F EY D ATALSA+RNLNG+E NGR +R+
Sbjct:   32 IFSEAGSVMNFRLVTDRETGKPKGYGFCEYADGATALSAMRNLNGYEINGRNLRV 86          
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Match: A0A1V9ZBL4_9STRA (RRM domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBL4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.940e-17
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNGRPVRM 55
            +F EAG VLN RLV+D ETG PKGY F EY D ATALSA+RNLNG+E NGR +R+
Sbjct:   37 IFSEAGPVLNFRLVTDRETGKPKGYGFCEYGDGATALSAMRNLNGYEINGRNLRV 91          
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Match: K3WW82_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW82_GLOUD)

HSP 1 Score: 82.4 bits (202), Expect = 3.910e-17
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNGRPVRM 55
            +F EAG V+N RLV+D ETG PKGY F EY D ATALSA+RNLNG+E NGR +R+
Sbjct:   34 IFSEAGSVINFRLVTDRETGKPKGYGFCEYADGATALSAMRNLNGYEINGRNLRV 88          
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Match: A0A3F2RS56_9STRA (RRM domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RS56_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.060e-17
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNGRPVRM 55
            +F EAG V+N RLV+D ETG PKGY F EY D ATALSA+RNLNG+E NGR +R+
Sbjct:   31 IFSEAGSVMNFRLVTDRETGKPKGYGFCEYADGATALSAMRNLNGYEINGRNLRV 85          
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Match: D0NNY6_PHYIT (RRM domain-containing protein n=24 Tax=Phytophthora TaxID=4783 RepID=D0NNY6_PHYIT)

HSP 1 Score: 82.4 bits (202), Expect = 4.090e-17
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNGRPVRM 55
            +F EAG V+N RLV+D ETG PKGY F EY D ATALSA+RNLNG+E NGR +R+
Sbjct:   32 IFSEAGSVMNFRLVTDRETGKPKGYGFCEYADGATALSAMRNLNGYEINGRNLRV 86          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98750.17215.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTP2_9STRA2.190e-2276.36RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A6H5J8E7_9PHAE9.130e-2276.36RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMG1_ECTSI3.910e-2074.55Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocar... [more]
A0A0W8CP19_PHYNI1.290e-1767.27Cleavage stimulation factor subunit 2 n=1 Tax=Phyt... [more]
A0A3P7NQM4_9BILA1.860e-1763.64RRM domain-containing protein n=2 Tax=Gongylonema ... [more]
A0A8J5IYV3_9STRA2.220e-1767.27Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A1V9ZBL4_9STRA2.940e-1769.09RRM domain-containing protein n=1 Tax=Thraustothec... [more]
K3WW82_GLOUD3.910e-1767.27RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A3F2RS56_9STRA4.060e-1767.27RRM domain-containing protein n=4 Tax=Phytophthora... [more]
D0NNY6_PHYIT4.090e-1767.27RRM domain-containing protein n=24 Tax=Phytophthor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..55
e-value: 1.3E-16
score: 63.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 1..54
e-value: 6.8E-16
score: 57.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..55
score: 14.232
NoneNo IPR availablePANTHERPTHR45735FAMILY NOT NAMEDcoord: 2..54
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98750contigH-elongata_contig98750:156..320 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98750.17215.1mRNA_H-elongata_contig98750.17215.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig98750 156..320 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig98750.17215.1 ID=prot_H-elongata_contig98750.17215.1|Name=mRNA_H-elongata_contig98750.17215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
LFQEAGGVLNIRLVSDHETGMPKGYAFVEYEDAATALSAIRNLNGFECNG
RPVRM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf