prot_H-elongata_contig98380.17186.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig98380.17186.1
Unique Nameprot_H-elongata_contig98380.17186.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 8.340e-70
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 0
Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 123
            M+GKGKGGRG KK+T+RS+KAGLQFPVGR+GRFLK GKYA RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct:    1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122          
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 2.840e-68
Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 0
Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 122
            M+GKGKGGRG KK+T+RS+KAGLQFPVGR+GRFLK GKYA RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct:   46 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166          
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.010e-66
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 0
Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK+TS+SSKAGLQFPV RIGR+LK GKYA RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118          
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 5.150e-66
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 0
Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK+TS+SSKAGLQFPV RIGR+LK GKYA RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   52 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169          
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.790e-65
Identity = 104/121 (85.95%), Postives = 115/121 (95.04%), Query Frame = 0
Query:    3 GKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 123
            GKGKGGRGDKKA S+S+KAGLQFPVGR+GRFLK G+YA+RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RIIPRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK   K
Sbjct:    5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125          
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 8.140e-65
Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 0
Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK TSRS+KAGLQFPVGRIGRF+K GKY+ RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118          
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 199 bits (507), Expect = 4.580e-64
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 0
Query:    1 MTGKGKGGRGD--KKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M GKGKGGRG   KK+TS+SSKAGLQFPV R+GRFLK G+YA+RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct:    1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 121          
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 197 bits (502), Expect = 2.110e-63
Identity = 100/119 (84.03%), Postives = 113/119 (94.96%), Query Frame = 0
Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG+KK+T+ S+KAGLQFPVGRIGR+L+ GKYA R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct:    1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119          
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 197 bits (502), Expect = 2.110e-63
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 0
Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 122
            M+GKGKGGRG KK+T+ S+KAGLQFPVGRIGR+L+ GKYA R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK  K
Sbjct:    1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122          
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Match: H2A_CHLRE (Histone H2A n=45 Tax=Chlamydomonadales TaxID=3042 RepID=H2A_CHLRE)

HSP 1 Score: 196 bits (498), Expect = 1.080e-62
Identity = 102/119 (85.71%), Postives = 109/119 (91.60%), Query Frame = 0
Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M G+GKG    KKA SRS+KAGLQFPVGRI R+LK GKYA+R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RI+PRHIQLA+RNDEEL KLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:    1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKK 119          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98380.17186.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI9_ECTSI8.340e-7092.68Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
D7G193_ECTSI2.840e-6892.62Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KG79_9PHAE1.010e-6693.28Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FVQ5_ECTSI5.150e-6693.28Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A835ZLE9_9STRA2.790e-6585.95Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
D8LLP0_ECTSI8.140e-6588.24Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A836CG77_9STRA4.580e-6486.78Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A448ZH28_9STRA2.110e-6384.03Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U2JFS4_9STRA2.110e-6383.61Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]
H2A_CHLRE1.080e-6285.71Histone H2A n=45 Tax=Chlamydomonadales TaxID=3042 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 42..57
score: 90.36
coord: 57..70
score: 90.54
coord: 99..117
score: 76.04
coord: 13..35
score: 72.8
coord: 71..85
score: 77.52
IPR002119Histone H2ASMARTSM00414h2a4coord: 3..122
e-value: 4.3E-79
score: 278.8
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 91..123
e-value: 1.7E-18
score: 66.1
IPR009072Histone-foldGENE3D1.10.20.10coord: 2..123
e-value: 3.0E-62
score: 210.1
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 3..122
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 9..88
e-value: 2.1E-15
score: 57.2
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 2..121
NoneNo IPR availablePANTHERPTHR23430:SF233HISTONE H2A.6-RELATEDcoord: 2..121
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 21..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98380contigH-elongata_contig98380:1201..1572 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98380.17186.1mRNA_H-elongata_contig98380.17186.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig98380 1180..1678 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig98380.17186.1 ID=prot_H-elongata_contig98380.17186.1|Name=mRNA_H-elongata_contig98380.17186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVY
LAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEV
TIASGGVLPNIHAVLLPKKVVKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR032454Histone_H2A_C
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR032458Histone_H2A_CS