prot_H-elongata_contig981.17159.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig981.17159.1
Unique Nameprot_H-elongata_contig981.17159.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length375
Homology
[Close]
BLAST of mRNA_H-elongata_contig981.17159.1 vs. uniprot
Match: D7G3J8_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3J8_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 7.140e-99
Identity = 181/297 (60.94%), Postives = 208/297 (70.03%), Query Frame = 0 
Query:    1 MIKRAIGIQERHLGLRHPAVALSLGSMAELHRKEGKLSEAEPLFRKAIGIWEASPGP--MGADAVAALHGMAHCVLAWSGADWLGRFEEAFSLVDQAYRIASTQPGSDVDGSYSSSRLLLEALRMIRSRQRQGRGDPQTASAAIMEGVWDGRWNPPKNDAFVPEGCIPGPNVEVRIRRSSIRGD-DPRCAVCLEEVGVVGTPIRRMPGYSFEALTCFDSEENWVQGMRWGERDVAPDVGTDEVVWAET-EDARARGQFAYLPCGHRFHAHCIGRWLVHSSSCPSCRCIVQDDATSSA 293
            MIKRA+ IQ RHLGLRHPAVA S+ +MAEL+R++G+L+EAEPLFR+AIGIWE S G   M +DA+AALHG AHCVLA +GADWLGRFEEAF+LVDQAYRIAS+ PG+D     +SSRLLLEALRMIRSRQRQGRGDPQ ASAAIMEGVW GRW+P KND     G   G +V     RS   GD +PRCAVCLEEVG         P     AL              W       D+G++E + AET E   A G FAYLPCGHRFH HCIGRWL HSSSCPSCR  V+++   +A
Sbjct:  549 MIKRAVLIQGRHLGLRHPAVASSMRAMAELYRRQGRLAEAEPLFRRAIGIWELSRGGGGMDSDAIAALHGTAHCVLAGAGADWLGRFEEAFALVDQAYRIASSHPGND-----ASSRLLLEALRMIRSRQRQGRGDPQPASAAIMEGVWTGRWDPAKNDGTSGGGATQGRHV-----RSRSNGDGNPRCAVCLEEVG------GGEPTVDGGALGREGXXXXXXXXADW-----TADIGSEEGLRAETAESVHASGSFAYLPCGHRFHTHCIGRWLAHSSSCPSCRSQVEEETIPTA 824
[Close]
BLAST of mRNA_H-elongata_contig981.17159.1 vs. uniprot
Match: A0A6H5JPJ0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ0_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.250e-45
Identity = 100/186 (53.76%), Postives = 111/186 (59.68%), Query Frame = 0 
Query:  110 SYSSSRLLLEALRMIRSRQRQGRGDPQTASAAIMEGVWDGRWNPPKNDAFVPEGCIPGPNVEVRIRRSSIRGD-DPRCAVCLEEVG-----VVGTPIRRMPGYSFEALTCFDSEENWVQGMRWGERDVAPDVGTDEVVWAET-EDARARGQFAYLPCGHRFHAHCIGRWLVHSSSCPSCRCIVQDD 288
            S + SRLLLEALRMI SRQRQGRGDPQ ASAAIMEGVW GRW+P KN      G   G   + R  RS   GD +PRCAVCLE VG     V G  + R  G                 G      D   D+G+DE + AET E   A   FAYLPCGHRFH HCIGRWLVHSSSCPSCR  V+++
Sbjct:    7 SDACSRLLLEALRMIGSRQRQGRGDPQPASAAIMEGVWTGRWDPAKNG-----GSSRGDATQGRHARSPGNGDGNPRCAVCLEAVGGGEPTVDGGALGREGG-----------------GRAAAAADWTADIGSDEGLRAETMESVHASRSFAYLPCGHRFHTHCIGRWLVHSSSCPSCRSQVEEE 170
[Close]
BLAST of mRNA_H-elongata_contig981.17159.1 vs. uniprot
Match: A0A6H5JNZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ5_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 6.380e-37
Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 0 
Query:    1 MIKRAIGIQERHLGLRHPAVALSLGSMAELHRKEGKLSEAEPLFRKAIGIWEASPGP--MGADAVAALHGMAHCVLAWSGADWLGRFEEAFSLVDQAYRIASTQPG 104
            MIKRA  IQ R LGLRHP VA S+ +MAEL+R++G+L+EAEPLFR+AIGIWE S G   M +DA+AALHG AHCVLA +GADWLGRFEEAF+LVDQAYRIAS+ PG
Sbjct:  540 MIKRAAFIQGRFLGLRHPTVASSMRAMAELYRRQGRLAEAEPLFRRAIGIWEVSGGEGGMDSDAIAALHGTAHCVLAGAGADWLGRFEEAFALVDQAYRIASSHPG 645
[Close]
BLAST of mRNA_H-elongata_contig981.17159.1 vs. uniprot
Match: A0A6G1DJB9_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1DJB9_9ORYZ)

HSP 1 Score: 56.6 bits (135), Expect = 3.030e-6
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 0 
Query:  229 RDVAPDVGTDEVVWAETEDARARGQFAYLPCGHRFHAHCIGRWLVHSSSCPSCR 282
            +DV  D   + V+  + +DA A G++  +PC HRFH  C+G+WL    +CP CR
Sbjct:   84 KDVDMDQHPESVICLDHQDAEAAGRWKEMPCDHRFHGRCLGKWLRVHGTCPMCR 137
[Close]
BLAST of mRNA_H-elongata_contig981.17159.1 vs. uniprot
Match: A0A256BF49_9CYAN (Uncharacterized protein n=1 Tax=Pseudanabaena sp. SR411 TaxID=1980935 RepID=A0A256BF49_9CYAN)

HSP 1 Score: 53.5 bits (127), Expect = 8.810e-6
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 0 
Query:    4 RAIGIQERHLGLRHPAVALSLGSMAELHRKEGKLSEAEPLFRKAIGIWEASPG 56
            R++ I ER LG  HP+VA SL ++A L+  +GK SEAEPL+ +AI I++ + G
Sbjct:    2 RSLSILERQLGADHPSVAASLNNLALLYEAQGKYSEAEPLYLRAIQIFKKALG 54
[Close]
BLAST of mRNA_H-elongata_contig981.17159.1 vs. uniprot
Match: A0A3P8W9G5_CYNSE (RING-type domain-containing protein n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8W9G5_CYNSE)

HSP 1 Score: 51.6 bits (122), Expect = 4.330e-5
Identity = 19/48 (39.58%), Postives = 30/48 (62.50%), Query Frame = 0 
Query:  235 VGTDEVVWAETEDARARGQFAYLPCGHRFHAHCIGRWLVHSSSCPSCR 282
            +G D+V     ++     +   LPC HRFH HCI RWL ++++CP+C+
Sbjct:   21 LGMDQVCGVCIDEYAQGNKLRRLPCSHRFHIHCIDRWLSNNNTCPTCQ 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig981.17159.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G3J8_ECTSI7.140e-9960.94TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPJ0_9PHAE1.250e-4553.76RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNZ5_9PHAE6.380e-3772.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G1DJB9_9ORYZ3.030e-640.74RING-type domain-containing protein n=1 Tax=Oryza ... [more]
A0A256BF49_9CYAN8.810e-649.06Uncharacterized protein n=1 Tax=Pseudanabaena sp. ... [more]
A0A3P8W9G5_CYNSE4.330e-539.58RING-type domain-containing protein n=1 Tax=Cynogl... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 186..281
e-value: 6.7E-4
score: 29.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 256..282
e-value: 5.4E-9
score: 36.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 257..282
score: 9.406
NoneNo IPR availablePFAMPF13374TPR_10coord: 20..54
e-value: 0.0079
score: 16.0
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 134..298
NoneNo IPR availablePANTHERPTHR22765:SF145coord: 134..298
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 254..287
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..143
e-value: 4.6E-17
score: 64.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 14..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig981contigH-elongata_contig981:9403..12704 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig981.17159.1mRNA_H-elongata_contig981.17159.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig981 9358..12909 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig981.17159.1 ID=prot_H-elongata_contig981.17159.1|Name=mRNA_H-elongata_contig981.17159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=375bp
MIKRAIGIQERHLGLRHPAVALSLGSMAELHRKEGKLSEAEPLFRKAIGI
WEASPGPMGADAVAALHGMAHCVLAWSGADWLGRFEEAFSLVDQAYRIAS
TQPGSDVDGSYSSSRLLLEALRMIRSRQRQGRGDPQTASAAIMEGVWDGR
WNPPKNDAFVPEGCIPGPNVEVRIRRSSIRGDDPRCAVCLEEVGVVGTPI
RRMPGYSFEALTCFDSEENWVQGMRWGERDVAPDVGTDEVVWAETEDARA
RGQFAYLPCGHRFHAHCIGRWLVHSSSCPSCRCIVQDDATSSATSSPSED
SSSGASPGGGSGSVGDGDGDGDGDSDRDDRVEGGQGGGAFPRGNAPDAGE
DGVDGIVRPPIHERRREDNMAPFC*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011990TPR-like_helical_dom_sf