prot_H-elongata_contig97949.17144.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig97949.17144.1
Unique Nameprot_H-elongata_contig97949.17144.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length230
Homology
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 6.420e-48
Identity = 110/321 (34.27%), Postives = 148/321 (46.11%), Query Frame = 0
Query:    4 GLAVIDFHPLKSDLCVYIYEDETGFVILTLYVDDILFLSASKTLLNKLKNKLMDRFEMTITISQKDYTEDVVQRYGIKSCNPAYTPGIGPELSLNQPEEKLLNEEEKRRYQVITEAAMYLAQ----------------------------------------------------------------------------------------------STMEAELVTAALTMKEAVFCSNMILEIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEGKISIHYVKTEDQLADLGTKHLSKHRHRNLI 230
             L  I F PLKSD CVYIY+     V+LTLYVDD+L +                           +YT  ++ R+G+ SC P  T G GPELS+ QPEE LLN E K+RYQ I  + MYLAQ                                                                                              ST+EAELV +AL MKE +FC+NM+ E+G    F S PL+ID+   L+V  N+T+S   KH+ALR+F++++++ EG+ISIHY+ TED LAD+GT++L+K RH+ LI
Sbjct:  468 SLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLIIRGGAH------------------HQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLI 770          
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.990e-44
Identity = 103/293 (35.15%), Postives = 146/293 (49.83%), Query Frame = 0
Query:    1 MGVGLAVIDFHPLKSDLCVYIYEDETGFVILTLYVDDILFLSASKTLLNKLKNKLMDRFEM---------------------TITISQKDYTEDVVQRYGIKSCNPAYTPGIGPELSLNQPEEKLLNEEEKRRY--QVITEAAM-----------------------------------------------YL------------------AQSTMEAELVTAALTMKEAVFCSNMILEIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEGKISIH 205
            + + L  +  +PLKSD CVYIY+     VI+TLYVDD++ +  +  ++  +K KLM++F+M                     T+TI+Q DYT  ++ R+G++ C P   P +G ELS  QP E +LN+E+ +    +V+++AA                                                Y+                    STMEAEL+ AALTMKEAVFCSNM+ E+G  + FG VPLYI+N   LHV  N+ YS R KHIAL +F V+EL+ EG I+IH
Sbjct:  208 IDLKLIELGCNPLKSDSCVYIYKRNHTIVIITLYVDDLVVIGGNIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQSQLARVMSKAAKAHMGAAKHLLRGTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500          
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 5.250e-38
Identity = 96/247 (38.87%), Postives = 134/247 (54.25%), Query Frame = 0
Query:   10 FHPLKSDLCVYIYEDETGFVILTLYVDDILFLSASKTLLNKLKNKLMDRFEMTITISQK---------DYTEDVVQ---------RYGIKSCNPAYTPGIGPELSLNQPEEKLLNEEEKRRYQVITEAAMYL--------AQSTMEAELVTAALTMKEAVFCSNMILEIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEGKISIHYVKTEDQLADLGTKHLSKHRHRNLI 230
            F PLKSD CVY+Y+ +   V LTLYV ++L  S     ++ +K KL  RF+ T     K           T+ +V          RY I     +    +G     N        +     + ++  A + L        A STMEAEL+ +AL MKEAVFCSNM+ E+G  + F  VPLY DN   LH   NR++S R  HIALR+F+++EL+ EG+ISIHYV T+  LAD+GTK+L+KH  ++L+
Sbjct:  941 FVPLKSDTCVYLYDHDDVQVYLTLYVYELLLASNKSNAISMIKKKLKQRFKSTDIGEAKLVLGMEIKGTATKGIVGCLMYIAQVLRYDIIITYKSEGFKLGTFSDTNWANNPDNGKSTSCYWTMLEHAPVSLKSGIQGPAAISTMEAELIASALAMKEAVFCSNMLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLNKHWLKHLL 1187          
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.340e-37
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 0
Query:  124 AQSTMEAELVTAALTMKEAVFCSNMILEIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEGKISIHYVKTEDQLADLGTKHLSKHRHRNLI 230
            A STMEAELV +AL MKEAVFCSNM+ E+G  + F  +P+Y DN   LH   NR++S R KHIALR+FF++EL+ EGKISIHY  TED LA +GTKH +KHR ++L+
Sbjct:   98 AMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLM 204          
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.190e-37
Identity = 79/159 (49.69%), Postives = 98/159 (61.64%), Query Frame = 0
Query:  101 EEKLLNEEEKRRYQVITEAAMYLAQ-----------------------------STMEAELVTAALTMKEAVFCSNMILEIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEGKISIHYVKTEDQLADLGTKHLSKHRHRNLI 230
            EE LLN+EE RRYQ I    MYLAQ                             STMEAELV AAL MKEAVFCSN++ E+G  + F  VPLY DN   LH   NR++S R KHIALR+FF+++L+ EGKI IH+V T+   AD+GTKHL+K R ++L+
Sbjct:  189 EETLLNQEETRRYQGIVGCLMYLAQILRYDIIHRTMLYDALMAFKSGLQSLTAQSTMEAELVAAALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLL 347          
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 7.710e-36
Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = 0
Query:  124 AQSTMEAELVTAALTMKEAVFCSNMILEIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEGKISIHYVKTEDQLADLGTKHLSKHRHRNLI 230
            A STMEAELV +AL MKEAVFCSNM+ E+G  + F  +P+Y DN   LH   NR++S R KHIALR+FF++EL+ EGKISIHY  TED LAD+GTKH +KHR  +L+
Sbjct:  323 AMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLM 429          
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.360e-35
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 0
Query:  124 AQSTMEAELVTAALTMKEAVFCSNMILEIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEGKISIHYVKTEDQLADLGTKHLSKHRHRNLI 230
            A STMEAELV +AL MKEAVFCSNM+ E+G  + F  +P+Y DN   LH   NR++S R KHIALR+FF++EL+ EGKISIHYV TED LAD+GTKH +KHR ++L+
Sbjct:  544 AMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLM 650          
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.410e-35
Identity = 66/107 (61.68%), Postives = 84/107 (78.50%), Query Frame = 0
Query:  124 AQSTMEAELVTAALTMKEAVFCSNMILEIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEGKISIHYVKTEDQLADLGTKHLSKHRHRNLI 230
            A STMEAELV +AL MKEAVFCSNM+ E+G  + F  +P+Y DN   LH   NR++S R KHIALR+FF++EL+ EGKISIHYV+TED LAD+GTKH + HR ++L+
Sbjct:  883 AMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLM 989          
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.160e-34
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = 0
Query:  124 AQSTMEAELVTAALTMKEAVFCSNMILEIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEGKISIHYVKTEDQLADLGTKHLSKHRHRNLI 230
            A STMEAEL+ +AL MKEAVFCSN++ E+GL + F  VPLY DN   LH   NR++S R KHIALR+F+++ELI EG+ISIHY+ T+  +AD+GTKHL+KHR ++L+
Sbjct: 1053 AMSTMEAELIASALAMKEAVFCSNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLL 1159          
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.940e-33
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 0
Query:  124 AQSTMEAELVTAALTMKEAVFCSNMILEIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEGKISIHYVKTEDQLADLGTKHLSKHRHRNLI 230
            A STMEAELV +AL M EAVF SNM+ E+G  + F  +P+Y DN   LH   NR++S R KHIALR+FF++EL+ EGKISIHYV TED LAD+GTKH +KHR ++L+
Sbjct: 1552 AMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLM 1658          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97949.17144.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE6.420e-4834.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J6N1_9PHAE4.990e-4435.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBV6_9PHAE5.250e-3838.87Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KMK0_9PHAE2.340e-3760.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9N2_9PHAE3.190e-3749.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE7.710e-3661.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE1.360e-3562.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE2.410e-3561.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K129_9PHAE1.160e-3459.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH6_9PHAE1.940e-3360.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97949contigH-elongata_contig97949:1409..2443 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97949.17144.1mRNA_H-elongata_contig97949.17144.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig97949 1409..2443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig97949.17144.1 ID=prot_H-elongata_contig97949.17144.1|Name=mRNA_H-elongata_contig97949.17144.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
MGVGLAVIDFHPLKSDLCVYIYEDETGFVILTLYVDDILFLSASKTLLNK
LKNKLMDRFEMTITISQKDYTEDVVQRYGIKSCNPAYTPGIGPELSLNQP
EEKLLNEEEKRRYQVITEAAMYLAQSTMEAELVTAALTMKEAVFCSNMIL
EIGLDESFGSVPLYIDNKTALHVTDNRTYSPRAKHIALRYFFVQELIDEG
KISIHYVKTEDQLADLGTKHLSKHRHRNLI
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