prot_H-elongata_contig97935.17141.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig97935.17141.1
Unique Nameprot_H-elongata_contig97935.17141.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length118
Homology
BLAST of mRNA_H-elongata_contig97935.17141.1 vs. uniprot
Match: UPI00189325A0 (DNA (cytosine-5)-methyltransferase 3B-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI00189325A0)

HSP 1 Score: 59.7 bits (143), Expect = 5.550e-8
Identity = 36/105 (34.29%), Postives = 53/105 (50.48%), Query Frame = 0
Query:    2 ICTVCSQGLSKGAIRLEEHPVVPGVAVCPRCLESLLKESKEKEGQPQDEYCAWCGDDNEVQVFVCDEKDCGRAFCFECIDK-IGEGMAAALE-CSTDPWSCPSCD 104
            +C  C   L +   +L +HP+V G A+C  C   LL+            YC  C + +E+  F+CD  DCGR  C +CI++ +GE  A  +  CS  PW C  C+
Sbjct:  165 LCIACDTAL-RFDDKLTQHPLVEG-AICEDCRGELLESLFAIAPDGTSAYCLICANGDEL--FICDNVDCGRCICSQCIERLVGESEAEKVSGCS--PWHCNICE 263          
BLAST of mRNA_H-elongata_contig97935.17141.1 vs. uniprot
Match: A0A4D6T106_CHAMF (DNA (cytosine-5-)-methyltransferase (Fragment) n=10 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4D6T106_CHAMF)

HSP 1 Score: 59.3 bits (142), Expect = 7.680e-8
Identity = 33/103 (32.04%), Postives = 50/103 (48.54%), Query Frame = 0
Query:   10 LSKGAIRLE-EHPVVPGVAVCPRCLESLLKESKEKEGQPQDEYCAWCGDDNEVQVFVCDEKDCGRAFCFECIDKIGEGMAAALECSTDPWSCPSCDESPLAGL 111
            +S G++ +  EHP+  G A+C  C  S L+ + + +      YC  C    EV   +CD  +C R FC EC+D +    +A    + DPW+C  C      GL
Sbjct:  273 ISCGSLNVSLEHPLFVG-AMCQGCKNSFLECAYQYDDDGYQSYCTICCGGREV--LMCDNNNCCRCFCVECVDLLVGAGSAVAAINEDPWNCYMCGPRSTYGL 372          
BLAST of mRNA_H-elongata_contig97935.17141.1 vs. uniprot
Match: UPI001E1DFA7D (DNA (cytosine-5)-methyltransferase 3B-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DFA7D)

HSP 1 Score: 58.5 bits (140), Expect = 1.490e-7
Identity = 32/96 (33.33%), Postives = 46/96 (47.92%), Query Frame = 0
Query:   19 EHPVVPGVAVCPRCLESLLKESKEKEGQPQDEYCAWCGDDNEVQVFVCDEKDCGRAFCFECIDKIGEGMAAALECSTDPWSCPSCDESPLAGLQVL 114
            +HPV  G  VC +C ++L +     +    + +CA CG+  E+  +VC+EKDCGR+FC  C+       A        PW C  C    L    VL
Sbjct:  697 QHPVFEGY-VCSKCRDALTESLLALDNDGCNLFCAVCGEGGEL--YVCEEKDCGRSFCVRCMRHYLSADALKQARGRSPWLCFLCTNYSLMSHGVL 789          
BLAST of mRNA_H-elongata_contig97935.17141.1 vs. uniprot
Match: UPI0018881419 (DNA (cytosine-5)-methyltransferase 3A-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI0018881419)

HSP 1 Score: 55.5 bits (132), Expect = 1.670e-6
Identity = 35/104 (33.65%), Postives = 49/104 (47.12%), Query Frame = 0
Query:    2 ICTVCSQGLSKGAIRLEEHPVVPGVAVCPRCLESLLKESKEKEGQPQDEYCAWCGDDNEVQVFVCDEKDCGRAFCFECIDK-IGEGMAAAL-ECSTDPWSCPSC 103
            +C  C   L  G     +HP+V G A+C  C   LL+            YC  CG+ +E   F+CD  DCGR  C +C+++ +GE     +  CS  PW C  C
Sbjct:  114 LCIACDTALRLGDT-CTQHPLVEG-AICEDCRGKLLESLFAIAPDGTCAYCLICGNGDET--FICDNVDCGRCICSQCLERLVGEKEPDKVTRCS--PWHCNIC 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97935.17141.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI00189325A05.550e-834.29DNA (cytosine-5)-methyltransferase 3B-like n=1 Tax... [more]
A0A4D6T106_CHAMF7.680e-832.04DNA (cytosine-5-)-methyltransferase (Fragment) n=1... [more]
UPI001E1DFA7D1.490e-733.33DNA (cytosine-5)-methyltransferase 3B-like n=1 Tax... [more]
UPI00188814191.670e-633.65DNA (cytosine-5)-methyltransferase 3A-like n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 40..110
e-value: 3.1E-7
score: 31.8
IPR025766ADD domainPROSITEPS51533ADDcoord: 1..117
score: 9.789
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 52..104
score: 8.668
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 47..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97935contigH-elongata_contig97935:1016..2107 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97935.17141.1mRNA_H-elongata_contig97935.17141.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig97935 1016..2107 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig97935.17141.1 ID=prot_H-elongata_contig97935.17141.1|Name=mRNA_H-elongata_contig97935.17141.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
LICTVCSQGLSKGAIRLEEHPVVPGVAVCPRCLESLLKESKEKEGQPQDE
YCAWCGDDNEVQVFVCDEKDCGRAFCFECIDKIGEGMAAALECSTDPWSC
PSCDESPLAGLQVLNTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR025766ADD
IPR001841Znf_RING
IPR011011Znf_FYVE_PHD