prot_H-elongata_contig9790.17135.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9790.17135.1
Unique Nameprot_H-elongata_contig9790.17135.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length554
Homology
BLAST of mRNA_H-elongata_contig9790.17135.1 vs. uniprot
Match: D8LJR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR9_ECTSI)

HSP 1 Score: 533 bits (1374), Expect = 8.750e-182
Identity = 309/519 (59.54%), Postives = 350/519 (67.44%), Query Frame = 0
Query:   67 AERFTPVRTGVPAGGANPGSMGVVRLGGDQRGLLDAEDAAVVEGALRRYGEFARSTLEEDESAVQGGYSLKGKYIVLDSGNELVNRLRGVLSGIFLGILTDRVFVADITYQKDGTSGLLSALFEGPGYEWDLSRLSPALRRALAPEKRSHVRV-----AGGNKNGLVFDMSEEHFRRWVCEDVLGPKLS-------SSSVVTLSTVVYPFPLLARNPVYAAHPIL-AGLTGGG-------------QTRIEALETLLTRAVLRPTRELRDSARRLAEEVRERAATWGKERGLGDQPPRVVGLHVRTYFVKAVAKGT-LEVNLKQFADCAVAGGXXXXXXXXXXXXXXXXVATDEAATQAVAQKIWGDGCHFVPFGLPGSKLKGIKAALVDLLVMGSLDDYVMTPHSSFSELGSTLSYTWLSDREASLRTRPNRPIVALFPEMNDFERHKALSLMDRRGSPLVL----QGIAADNG--------GSCMRAHTAGMSLAIAIGQHLTSMFEAIERAPCLKG 546
            AE     R G  AG A P S            L +    AVV GA+  Y +FA+ TLE DE AVQ G  L+GKYIVLDSGNELVNRLRGV+SG FLG+LTDRVFVADITYQKDGT GLLSALFEGPGYEWDLS+LSP LR ALAP K+   R      A G+   L+FDMS+EHF  WVC DV+  + S       + +VVTLSTVVYP PLLARNP YA+HPI  A   GGG             Q  +EALETLLTR VLRPTRELR+ AR LA+ VRERA  WG     G +P R+VGLHVRTYFVKA++  T LE NL+ F DCAVAG                 VATDEA TQA A+K+WGDGC+F PF LPGSKL+GIKAA VDLLVMGS DDYVMTPHSSFSELG+TLS+TWL D E +LRT PNRPIV LFP+ NDFER K  SL+DRR   +      Q +AA  G        G CMRAH AGMS+ +AIG+ L SMFEA+E APC+KG
Sbjct:   87 AENRPQAREGRAAGAATPSSF-----------LSEGAVEAVV-GAVESYADFAKRTLEADEVAVQQGRPLQGKYIVLDSGNELVNRLRGVMSGFFLGVLTDRVFVADITYQKDGTQGLLSALFEGPGYEWDLSKLSPGLRGALAPNKKKPPRGKIRGGASGSDATLLFDMSKEHFEHWVCHDVVEGRGSPGQGGSPAGAVVTLSTVVYPLPLLARNPAYASHPIFQAAAAGGGAEGQKNPGGTVVGQRGVEALETLLTRVVLRPTRELRERARGLADRVRERANEWGGXXXXG-RPVRIVGLHVRTYFVKAISTATKLERNLQHFDDCAVAGSGDGADTGSSTFYF---VATDEANTQAAAKKVWGDGCYFEPFTLPGSKLEGIKAAFVDLLVMGSFDDYVMTPHSSFSELGATLSHTWLPDPETALRTPPNRPIVPLFPQTNDFERRKVFSLLDRRAVEIFPSDDGQVVAAAGGAGXXSSGKGMCMRAHAAGMSVTVAIGRQLLSMFEAMEGAPCMKG 589          
BLAST of mRNA_H-elongata_contig9790.17135.1 vs. uniprot
Match: A0A6H5L5F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F2_9PHAE)

HSP 1 Score: 396 bits (1018), Expect = 6.400e-131
Identity = 235/389 (60.41%), Postives = 268/389 (68.89%), Query Frame = 0
Query:  196 WDLSRLSPALRRALAPEKRSHVR--VAGGNKNG---LVFDMSEEHFRRWVCEDVLGPKLSSS-------SVVTLSTVVYPFPLLARNPVYAAHPILAGLTGG--------------GQTRIEALETLLTRAVLRPTRELRDSARRLAEEVRERAATWGKERGLGDQPPRVVGLHVRTYFVKAVAKGTLEVNLKQFADCAVAGGXXXXXXXXXXXXXXXXVATDEAATQAVAQKIWGDGCHFVPFGLPGSKLKGIKAALVDLLVMGSLDDYVMTPHSSFSELGSTLSYTWLSDREASLRTRPNRPIVALFPEMNDFERHKALSLMDRR--------GSPLVLQ----GIAADNGGSCMRAHTAGMSLAIAIGQHLTSMFEAIERAPCLKG 546
            WDLS+LSP LR ALAP K+   R  + GG       L+FDMS+EHF  WVC DV+  + S         +VVTLSTVVYP PLLARNP YA+HPI      G              GQ  +EALETLLTR VLRPTRELR+ AR LA+ VRERA  WG E G G  P R+VGLHVRTYFVKA++  TLE +L+ F DCAVAG XXXXXXXXXX      VATDEA TQA A+K+W DGC+F PF LPGSKL+GIKAA VDLLVMGS DDYVMTPHSSFSELG+TLS+TWL D EA+LRT PNRPIV LFP+ N+FER K  SL+DRR        G  +V      G  +   G CMRAH AGMS+ +AIG+ L SMFEAIE APC+KG
Sbjct:    4 WDLSKLSPGLRGALAPNKKKPPRGKIRGGRSGSDATLLFDMSKEHFEHWVCHDVVEGRGSPGQGGSPAVAVVTLSTVVYPLPLLARNPAYASHPIFQAAAAGWTAEVEKNPGGAVVGQRGVEALETLLTRVVLRPTRELRERARGLADRVRERAKKWGGEGGKGG-PVRIVGLHVRTYFVKAISTATLERDLQHFDDCAVAGSXXXXXXXXXXSTFYF-VATDEANTQAAAKKVWEDGCYFEPFTLPGSKLEGIKAAFVDLLVMGSFDDYVMTPHSSFSELGATLSHTWLPDPEAALRTPPNRPIVPLFPQTNEFERRKVFSLLDRRAVEIFPSDGGEVVAAAGGAGAGSSGRGMCMRAHAAGMSVTVAIGRQLLSMFEAIEGAPCMKG 390          
BLAST of mRNA_H-elongata_contig9790.17135.1 vs. uniprot
Match: A0A6H5KKD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD8_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 3.890e-36
Identity = 100/215 (46.51%), Postives = 116/215 (53.95%), Query Frame = 0
Query:    1 MVCTALMLYMLGWD---FSPASQVRLNPGLPSS----DRRVGAAGRGRVVPVGVDHARKETWVPVTANTDRENAERFTPV-------------RTGVPAGGANPGSMGVVRLGGDQRGLLDAEDAAVVEGALRRYGEFARSTLEEDESAVQGGYSLKGKYIVLDSGNELVNRLRGVLSGIFLGILTDRVFVADITYQKDGTSGLLSALFEGPGYE 195
            M   A +LY+ GWD    +   +V ++    +S    D +  A   GR  P G DH         + +       R TP              R G  AG A P S            L +    AVV G +  Y +FAR TLE DE AVQ G  L+GKYIVLDSGNELVNRLRGV+SG FLG+LTDRVFVADITYQKDGT GLLSALFEGPGYE
Sbjct:    1 MASAAAILYVCGWDSTRHAGEKKVAVDATASNSQSVGDAQWAAVVEGRDEPGGGDHPWAGKGPEGSFHEGLGQETRQTPPGGGGGHAENRPRGREGRAAGDATPSSF-----------LSEGAVKAVV-GTVESYADFARGTLEADELAVQQGRPLQGKYIVLDSGNELVNRLRGVMSGFFLGMLTDRVFVADITYQKDGTQGLLSALFEGPGYE 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9790.17135.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJR9_ECTSI8.750e-18259.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5F2_9PHAE6.400e-13160.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKD8_9PHAE3.890e-3646.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.11350coord: 317..467
e-value: 3.1E-6
score: 28.5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..553
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.495

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9790contigH-elongata_contig9790:2201..7375 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9790.17135.1mRNA_H-elongata_contig9790.17135.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9790 1708..7460 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9790.17135.1 ID=prot_H-elongata_contig9790.17135.1|Name=mRNA_H-elongata_contig9790.17135.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=554bp
MVCTALMLYMLGWDFSPASQVRLNPGLPSSDRRVGAAGRGRVVPVGVDHA
RKETWVPVTANTDRENAERFTPVRTGVPAGGANPGSMGVVRLGGDQRGLL
DAEDAAVVEGALRRYGEFARSTLEEDESAVQGGYSLKGKYIVLDSGNELV
NRLRGVLSGIFLGILTDRVFVADITYQKDGTSGLLSALFEGPGYEWDLSR
LSPALRRALAPEKRSHVRVAGGNKNGLVFDMSEEHFRRWVCEDVLGPKLS
SSSVVTLSTVVYPFPLLARNPVYAAHPILAGLTGGGQTRIEALETLLTRA
VLRPTRELRDSARRLAEEVRERAATWGKERGLGDQPPRVVGLHVRTYFVK
AVAKGTLEVNLKQFADCAVAGGGTQESHDDHDDDVFFFVATDEAATQAVA
QKIWGDGCHFVPFGLPGSKLKGIKAALVDLLVMGSLDDYVMTPHSSFSEL
GSTLSYTWLSDREASLRTRPNRPIVALFPEMNDFERHKALSLMDRRGSPL
VLQGIAADNGGSCMRAHTAGMSLAIAIGQHLTSMFEAIERAPCLKGVPDV
AES*
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