prot_H-elongata_contig97320.17095.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig97320.17095.1
Unique Nameprot_H-elongata_contig97320.17095.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Match: D8LNC5_ECTSI (Nuclear nucleic acid-binding protein C1D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC5_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.640e-38
Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 0
Query:    6 EEKKGIEALKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAKLNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR 87
            EE KG+E+LKNFERALGHVRNSV+PLTLMSR+EVG C+S  DRA LNLQVAYG+SSLFYMFL+TQGVSP+THPVK ELDR+R
Sbjct:    6 EESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIR 87          
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Match: UPI001F04DAC0 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04DAC0)

HSP 1 Score: 71.6 bits (174), Expect = 8.280e-14
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 0
Query:   13 ALKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAKLNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR 87
            A+K+F  + G V  +++PL   S DE+   +   DRAKL+L V YG++++F+++L TQGV+P  H VK ELDR++
Sbjct:   18 AMKDFHHSFGSVEETLEPLLRSSNDELHEKLDVLDRAKLDLMVVYGINTMFWIYLITQGVNPKEHGVKHELDRIK 92          
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Match: A0A6S7II47_PARCT (Nuclear nucleic acid-binding protein C1D n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7II47_PARCT)

HSP 1 Score: 70.9 bits (172), Expect = 1.680e-13
Identity = 32/77 (41.56%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   11 IEALKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAKLNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR 87
            I +L++F R++  V  ++ PL +MS +E+   +   DRAKL+L + Y M+S+F+++L TQGV+P  H +K ELDR++
Sbjct:   16 ISSLEDFYRSMNTVEETLDPLLVMSSEEIHEKLDVLDRAKLDLMMVYAMNSMFWIYLITQGVNPKEHGIKHELDRVK 92          
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Match: A0A835ZH36_9STRA (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH36_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.560e-13
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   11 IEALKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAKLNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR 87
            +  L N  +AL ++++ ++PLT  +R+E+   ++  + AKLN  +AYG+SSL+YM LRT+G     H VK ELDR++
Sbjct:   22 VAPLTNLHKALHNLKSKLRPLTETTREELASQVTKQEMAKLNAAMAYGISSLYYMLLRTKGCDTTDHGVKKELDRIK 98          
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Match: A0A3Q2Y2I5_HIPCM (Nuclear nucleic acid-binding protein C1D n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2Y2I5_HIPCM)

HSP 1 Score: 68.2 bits (165), Expect = 1.520e-12
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 0
Query:   14 LKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAKLNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR 87
            LK FE ++  V+N +  L  M R+E+   + P D+AKL+L  AY ++SLF+M+L TQG++P  H +K EL+R+R
Sbjct:   14 LKGFESSVLTVKNMLDTLMSMPRNELEQKLDPLDQAKLDLMSAYTLNSLFWMYLVTQGINPREHGIKQELERIR 87          
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Match: R1DEY4_EMIHU (Nuclear nucleic acid-binding protein C1D n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEY4_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 1.590e-11
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query:   13 ALKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAKLNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR 87
            A+ NFER LG +   V+ L      E+   + P + A+L+L VAY +++LFYM+L+TQG+  A HPV  EL+R++
Sbjct:   22 AVANFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIK 96          
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Match: A0A7S3W1R2_EMIHU (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W1R2_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 1.890e-11
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query:   13 ALKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAKLNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR 87
            A+ NFER LG +   V+ L      E+   + P + A+L+L VAY +++LFYM+L+TQG+  A HPV  EL+R++
Sbjct:   28 AVANFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIK 102          
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Match: A0A6P9F8J2_ZALCA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Zalophus californianus TaxID=9704 RepID=A0A6P9F8J2_ZALCA)

HSP 1 Score: 67.4 bits (163), Expect = 2.020e-11
Identity = 32/76 (42.11%), Postives = 53/76 (69.74%), Query Frame = 0
Query:   12 EALKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAKLNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR 87
            E L  FE ++G V   ++ +  +SR+E+   + P ++AK++L  AY +SS+F+++L TQGV+P  HPVK EL+R+R
Sbjct:  149 EYLSTFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLSSMFWVYLATQGVNPKEHPVKQELERIR 224          
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Match: UPI001C5CBCF6 (LOW QUALITY PROTEIN: nuclear nucleic acid-binding protein C1D-like n=1 Tax=Orycteropus afer afer TaxID=1230840 RepID=UPI001C5CBCF6)

HSP 1 Score: 65.1 bits (157), Expect = 2.100e-11
Identity = 31/76 (40.79%), Postives = 53/76 (69.74%), Query Frame = 0
Query:   12 EALKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAKLNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR 87
            E L  FE ++G V + ++ +  +SR+E+   + P ++AK++L   Y ++S+F+++L TQGVSP  HPVK EL+R+R
Sbjct:   16 EYLSAFENSIGAVDDMLKTMMSISRNELLQKLDPLEQAKVDLVSMYTLNSMFWVYLATQGVSPXEHPVKQELERIR 91          
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Match: A0A0L0DEP2_THETB (Nuclear nucleic acid-binding protein C1D n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DEP2_THETB)

HSP 1 Score: 65.1 bits (157), Expect = 4.320e-11
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query:   13 ALKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAKLNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR 87
            AL   + AL  V  ++QPL     +EV   +  AD+AKLN+ +AY ++SLF+++L+TQG  P+ HPV  EL R++
Sbjct:   10 ALDEVDAALAQVEATMQPLLEKPLEEVMENLDNADKAKLNVALAYSLNSLFHIYLKTQGQDPSAHPVADELARVK 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97320.17095.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC5_ECTSI1.640e-3881.71Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
UPI001F04DAC08.280e-1444.00nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
A0A6S7II47_PARCT1.680e-1341.56Nuclear nucleic acid-binding protein C1D n=1 Tax=P... [more]
A0A835ZH36_9STRA7.560e-1341.56Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A0A3Q2Y2I5_HIPCM1.520e-1244.59Nuclear nucleic acid-binding protein C1D n=1 Tax=H... [more]
R1DEY4_EMIHU1.590e-1142.67Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
A0A7S3W1R2_EMIHU1.890e-1142.67Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A0A6P9F8J2_ZALCA2.020e-1142.11Nuclear nucleic acid-binding protein C1D n=1 Tax=Z... [more]
UPI001C5CBCF62.100e-1140.79LOW QUALITY PROTEIN: nuclear nucleic acid-binding ... [more]
A0A0L0DEP2_THETB4.320e-1142.67Nuclear nucleic acid-binding protein C1D n=1 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 14..87
e-value: 8.4E-11
score: 42.4
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 10..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97320contigH-elongata_contig97320:1598..2251 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97320.17095.1mRNA_H-elongata_contig97320.17095.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig97320 1598..2251 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig97320.17095.1 ID=prot_H-elongata_contig97320.17095.1|Name=mRNA_H-elongata_contig97320.17095.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MEPEGEEKKGIEALKNFERALGHVRNSVQPLTLMSRDEVGVCISPADRAK
LNLQVAYGMSSLFYMFLRTQGVSPATHPVKTELDRMR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair