prot_H-elongata_contig97284.17093.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig97284.17093.1
Unique Name	prot_H-elongata_contig97284.17093.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	181

Homology

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BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Match: Q9FEP5_SACLA (Light harvesting protein lhcf3 (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q9FEP5_SACLA)

HSP 1 Score: 325 bits (834), Expect = 6.680e-112
Identity = 153/174 (87.93%), Postives = 167/174 (95.98%), Query Frame = 0

Query:    1 MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAVLGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGFLELIVMKQKEGSFPGDMSRVNPFEKQWDAFDEETKLKKRAIELNNGRAAMMGIFAMIVHEVISNQPYIINDILG 174
            MKMSFENELGVQAPLG+WDPLYWLENADQERF+RLRYVEIKHGRI MLA+LGHIVQ+NVRLPGMLS SND SFADMPNGLGA+ KMGPIGVAQIVIF+GFLE+ VMKQKEGSFPGDMSRVNPFEKQWD+FDEETKL+KRAIELNNGRAA MGIF +IVHEVI+NQPY+IN++LG
Sbjct:   17 MKMSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQENVRLPGMLSFSNDQSFADMPNGLGALSKMGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLG 190

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BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Match: D7FKU4_ECTSI (Chlorophyll binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU4_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 8.940e-99
Identity = 137/176 (77.84%), Postives = 156/176 (88.64%), Query Frame = 0

Query:    1 MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAVLGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGFLELIVMKQKEGSFPGDMSRVNPFEKQWDAFDEETKLKKRAIELNNGRAAMMGIFAMIVHEVISNQPYIINDILGSS 176
            MKMSFENELG Q PLGFWDPLYWLE+ADQERF+RLRYVEIKHGRI MLA+LGHI Q+NVRLPG L+   +  FADMPNGL AI KMGP GVAQIV F+GFLEL VMKQKEGSFPGDMSR+NPFEKQW++FDEETKL+KRAIELNNGRAA MGIFA+++HE++  +PYIIN I+G +
Sbjct:   39 MKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNF--ETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGDT 212

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BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 1.930e-84
Identity = 123/180 (68.33%), Postives = 146/180 (81.11%), Query Frame = 0

Query:    1 MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAVLGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGFLELIVMKQKEGSFPGDMSRV-NPFEKQWDAFDEETKLKKRAIELNNGRAAMMGIFAMIVHEVISNQPYIINDILGSSYKW 179
            MKMSFE+E+G Q PLGFWDPL  L +ADQERFERLRYVE+KHGRI+MLA+ GH+ QQNVRLPGMLS S D+SFADMPNG+ A+ K+ P G+AQI  FVGFLEL VMK  EGSFPGD +   NPF   WDA  EET+  KRAIELNNGRAA MGI A++VHE ++N+PY+IND+LG+ Y +
Sbjct:   41 MKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTF 220

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BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 3.520e-84
Identity = 124/180 (68.89%), Postives = 147/180 (81.67%), Query Frame = 0

Query:    1 MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAVLGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGFLELIVMKQKEGSFPGDMSRV-NPFEKQWDAFDEETKLKKRAIELNNGRAAMMGIFAMIVHEVISNQPYIINDILGSSYKW 179
            MKMSFE+E+G Q PLGFWDPL  L +ADQERFERLRYVE+KHGRI+MLA+ GH+ QQNVRLPGMLS S ++SFADMPNG+ A+ K+ P G+AQI  FVGFLEL VMK  EGSFPGD +   NPF   WDA  EET+  KRAIELNNGRAA MGI A++VHE ++N+PYIIND+LG+SY +
Sbjct:   38 MKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTF 217

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BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 4.120e-84
Identity = 121/180 (67.22%), Postives = 146/180 (81.11%), Query Frame = 0

Query:    1 MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAVLGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGFLELIVMKQKEGSFPGDMSRV-NPFEKQWDAFDEETKLKKRAIELNNGRAAMMGIFAMIVHEVISNQPYIINDILGSSYKW 179
            MKMSFE+E+G Q PLGFWDPL  LE+ADQERFERLRYVE+KHGRI+MLA+ GH+ QQN RLPGMLS S ++SFADMPNG+ A+ K+ P G+AQI  F+GFLEL VMK  EGSFPGD +   NPF   WDA  EET+  KRAIELNNGRAA MGI A++VHE ++N+PY+IND+LG+ Y +
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNF 180

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BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 254 bits (648), Expect = 2.780e-83
Identity = 121/180 (67.22%), Postives = 147/180 (81.67%), Query Frame = 0

Query:    1 MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAVLGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGFLELIVMKQKEGSFPGDMSRV-NPFEKQWDAFDEETKLKKRAIELNNGRAAMMGIFAMIVHEVISNQPYIINDILGSSYKW 179
            MKMSFE+E+G QAPLGFWDPL  L +ADQERFERLRYVE+KHGRI+MLA+ GH+ QQN RLPGMLS S ++SFADMPNG+ A+ K+ P G+AQI  F+GFLEL VMK  EGSFPGD +   NPF   WDA  EET+  KRAIELNNGRAA MGI A++VHE ++N+PY+IND++G+SY +
Sbjct:   37 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTF 216

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BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 251 bits (642), Expect = 7.030e-83
Identity = 122/180 (67.78%), Postives = 146/180 (81.11%), Query Frame = 0

Query:    1 MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAVLGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGFLELIVMKQKEGSFPGDMSRV-NPFEKQWDAFDEETKLKKRAIELNNGRAAMMGIFAMIVHEVISNQPYIINDILGSSYKW 179
            MKMSFE E+G QAPLGFWDPL  L +ADQERFERLRYVE+KHGRI+MLA+ GH+ QQN RLPGMLS S ++SFADMPNG+ A+ K+ P G+AQI  F+GFLEL VMK  EGSFPGD +   NPF   WDA  EET+  KRAIELNNGRAA MGI A++VHE ++N+PY+IND+LG+SY +
Sbjct:    2 MKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNF 181

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BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 250 bits (639), Expect = 5.320e-82
Identity = 122/180 (67.78%), Postives = 144/180 (80.00%), Query Frame = 0

Query:    1 MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAVLGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGFLELIVMKQKEGSFPGD-MSRVNPFEKQWDAFDEETKLKKRAIELNNGRAAMMGIFAMIVHEVISNQPYIINDILGSSYKW 179
            MKMSFE+E+G QAPLGFWDPL  L +ADQERFERLRYVE+KHGRI+MLA+ GH+ QQN RLPGMLS S ++SFADMPNG+ A+ K+ P G+AQI  F+GFLEL VMK  EGSFPGD +   NPF   WD+   ET+  KRAIELNNGRAA MGI  M+VHE +SNQPYI ND+LG+SY +
Sbjct:   31 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTF 210

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BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 3.080e-81
Identity = 121/180 (67.22%), Postives = 146/180 (81.11%), Query Frame = 0

Query:    1 MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAVLGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGFLELIVMKQKEGSFPGDMSRV-NPFEKQWDAFDEETKLKKRAIELNNGRAAMMGIFAMIVHEVISNQPYIINDILGSSYKW 179
            MKMSFE+E+G Q PLGFWDPL  LE+ADQERFERLRYVE+KHGRI+MLA+ GH+ QQN RLPGMLS S ++SFADMPNG+ A+ K+ P G+AQI  F+GFLEL VMK  EGSFPGD +   NPF   WDA  EET+  KRAIELNNGRAA MGI A++VHE ++N+PY+IND+LG+ Y +
Sbjct:  197 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTF 376

[Close]

BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 246 bits (628), Expect = 2.960e-80
Identity = 119/180 (66.11%), Postives = 145/180 (80.56%), Query Frame = 0

Query:    1 MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAVLGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGFLELIVMKQKEGSFPGDMSRV-NPFEKQWDAFDEETKLKKRAIELNNGRAAMMGIFAMIVHEVISNQPYIINDILGSSYKW 179
            MKMSFE+E+G QAPLGFWDPL  LE+ADQ+ FERLRYVE+K GRI+MLA+ GH+ QQN RLPGMLS S ++SFADMPNG+ A+ K+ P G+AQI  F+GFLEL VMK  EGSFPGD +   NPF   WDA   ET+  KRAIELNNGRAA MGI A++VHE ++N+PY+IND+LG+SY +
Sbjct:   36 MKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNF 215

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot

BLAST of mRNA_H-elongata_contig97284.17093.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Q9FEP5_SACLA	6.680e-112	87.93	Light harvesting protein lhcf3 (Fragment) n=1 Tax=...	[more]
D7FKU4_ECTSI	8.940e-99	77.84	Chlorophyll binding protein n=2 Tax=Ectocarpus Tax...	[more]
A0A6H5JHT6_9PHAE	1.930e-84	68.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCX6_9PHAE	3.520e-84	68.89	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
A0A6H5JDS8_9PHAE	4.120e-84	67.22	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPB_MACPY	2.780e-83	67.22	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
FCPD_MACPY	7.030e-83	67.78	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPF_MACPY	5.320e-82	67.78	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
D8LNK6_ECTSI	3.080e-81	67.22	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPC_MACPY	2.960e-80	66.11	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 7..174 e-value: 6.4E-25 score: 90.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 6..160 e-value: 5.2E-33 score: 114.9
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 3..164
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..85
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 106..180
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 86..105
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 2..171
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 3..164

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig97284	contig	H-elongata_contig97284:962..1967 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig97284.17093.1	mRNA_H-elongata_contig97284.17093.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig97284 664..1986 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig97284.17093.1 ID=prot_H-elongata_contig97284.17093.1|Name=mRNA_H-elongata_contig97284.17093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
MKMSFENELGVQAPLGFWDPLYWLENADQERFERLRYVEIKHGRISMLAV
LGHIVQQNVRLPGMLSISNDVSFADMPNGLGAIGKMGPIGVAQIVIFVGF
LELIVMKQKEGSFPGDMSRVNPFEKQWDAFDEETKLKKRAIELNNGRAAM
MGIFAMIVHEVISNQPYIINDILGSSYKWP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln