prot_H-elongata_contig97050.17078.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig97050.17078.1
Unique Nameprot_H-elongata_contig97050.17078.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length103
Homology
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Match: D7FL45_ECTSI (Plastoquinol--plastocyanin reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL45_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.350e-36
Identity = 65/94 (69.15%), Postives = 79/94 (84.04%), Query Frame = 0
Query:    4 AAKASTKAMRMSASEDAFVPDMDRRVAVNLILGGAVGVNVLGLAIPYLAFFVPPGSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIK 97
            A++A++KAM+MS++E+ FVPDMDRR A+NLIL G++GVNVLGLA+PY+AFFVP        GV AKDAIGN+VT ESWLATH  GSRELAEGIK
Sbjct:   38 ASRATSKAMKMSSNEEVFVPDMDRRTAMNLILAGSIGVNVLGLAVPYIAFFVPXXXXXXXXGVTAKDAIGNEVTVESWLATHGVGSRELAEGIK 131          
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Match: A0A836CBH8_9STRA (Plastoquinol--plastocyanin reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBH8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.130e-36
Identity = 62/89 (69.66%), Postives = 76/89 (85.39%), Query Frame = 0
Query:    9 TKAMRMSASEDAFVPDMDRRVAVNLILGGAVGVNVLGLAIPYLAFFVPPGSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIK 97
            + A++MSA+EDAFVPDM+RRVA+N IL G+ GV VLGLAIPY++FFVP  +GGAGGGV+A+DA+G DVT E W+ATH  GSREL EGIK
Sbjct:   40 SSAIKMSAAEDAFVPDMNRRVAMNAILAGSAGVVVLGLAIPYISFFVPKSAGGAGGGVIARDAVGQDVTVEGWVATHLPGSRELVEGIK 128          
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Match: A0A6H5J703_9PHAE (Rieske domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J703_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.150e-35
Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = 0
Query:    2 SVAAKASTKAMRMSASEDAFVPDMDRRVAVNLILGGAVGVNVLGLAIPYLAFFVPPGSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIK 97
            S +A+ +TK +RM A++D FVPDM+RR A+NLIL G+VGV+V GLA+PYL+FFVPP   G G  V AKD+ GN+VT +SWLATHTAGSR+LAEGIK
Sbjct:   37 STSARPATKLVRMDANKDDFVPDMNRRTAMNLILAGSVGVSVFGLAVPYLSFFVPPSESGRGSRVTAKDSDGNEVTVKSWLATHTAGSRDLAEGIK 132          
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Match: A0A835YPA4_9STRA (Plastoquinol--plastocyanin reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPA4_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.450e-35
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 0
Query:    3 VAAKASTKAMR---MSASEDAFVPDMDRRVAVNLILGGAVGVNVLGLAIPYLAFFVPPGSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIK 97
            V +KA TK++    MSA+EDAFVPDM+RRVA+NLIL G+ GV VLGLA+PY+AFFVP  +G AGGGV+A+DA+G DVT E WL TH  GSREL EGIK
Sbjct:   31 VVSKAVTKSVARTSMSAAEDAFVPDMNRRVAMNLILAGSAGVVVLGLAVPYIAFFVPKSAGNAGGGVIARDAVGQDVTVEGWLGTHLPGSRELVEGIK 128          
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Match: A0A7S1U2M5_9STRA (Plastoquinol--plastocyanin reductase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2M5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.230e-32
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 0
Query:    6 KASTKAMRMSASEDAFVPDMDRRVAVNLILGGAVGVNVLGLAIPYLAFFVPPGSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIK 97
            +A  +AM M+ASEDAFVPDMDRR  +N IL  +VGV  LG+A+PY++FFVP GSGG G G +AKDA+GNDVT   WL TH AG+REL +G+K
Sbjct:  114 RAGRRAMTMAASEDAFVPDMDRRNVMNAILTASVGVAGLGMAVPYISFFVPAGSGGGGSGTIAKDALGNDVTESGWLGTHNAGARELVQGLK 205          
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Match: W7TXJ0_9STRA (Plastoquinol--plastocyanin reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXJ0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.740e-28
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 0
Query:   12 MRMSASEDAFVPDMDRRVAVNLILGGAVGVNVLGLAIPYLAFFVPPGSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIK 97
            M  +  E+ FVPDMDRR  +N IL G+VG+NV GLA+PY+AFFVP   GGAGGG+ AKDA+G+DVT + WL+TH AG R L +G+K
Sbjct:   58 MAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLK 143          
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Match: A0A835ZDT9_9STRA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.020e-26
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 0
Query:   14 MSASEDAFVPDMDRRVAVNLILGGAVGVNVLGLAIPYLAFFVPP-GSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIK 97
            MSA+++A+VPDM RR A+NLIL    GV VLGLAIPY+A FVP    GG  G VVA+DA+G +VT+E WLATH  GSREL EG+K
Sbjct:   26 MSAADEAYVPDMGRRQALNLILVSFTGVTVLGLAIPYVALFVPKHAEGGRSGSVVARDALGQEVTSEGWLATHLPGSRELVEGMK 110          
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Match: A0A2W7A8T1_9CYAN (Cytochrome b6-f complex iron-sulfur subunit n=12 Tax=Pseudanabaena TaxID=1152 RepID=A0A2W7A8T1_9CYAN)

HSP 1 Score: 103 bits (257), Expect = 8.480e-26
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 0
Query:   16 ASEDAFVPDMDRRVAVNLILGGAVGVNVLGLAIPYLAFFVPPGSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIK 97
            AS  A VP M RR  +NLILGGA  V  LG A+P+LA+FVPP  GG GGGV AKDA+GNDV A ++LA+H AG R LA+G+K
Sbjct:    4 ASTSADVPSMGRRQFMNLILGGAAAVTTLGAAVPFLAYFVPPSRGGTGGGVAAKDALGNDVVASAFLASHQAGDRVLAQGLK 85          
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Match: A0A427ANW3_ENSVE (Uncharacterized protein (Fragment) n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427ANW3_ENSVE)

HSP 1 Score: 101 bits (251), Expect = 1.230e-24
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 0
Query:   22 VPDMDRRVAVNLILGGAVGVNVLGLAIPYLAFFVPPGSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIK 97
            VPDM +R  +NL+L GA+ +   G+ IPY +FFVPPGSGG+GGG VAKDA+GNDVT E WL TH  G R LA+G+K
Sbjct:   95 VPDMGKRQLLNLLLLGALSLPTAGMLIPYTSFFVPPGSGGSGGGTVAKDALGNDVTIEGWLKTHGPGDRTLAQGLK 170          
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Match: A0A1Z5JXY9_FISSO (Cytochrome b6-f complex iron-sulfur subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JXY9_FISSO)

HSP 1 Score: 100 bits (248), Expect = 4.260e-24
Identity = 48/85 (56.47%), Postives = 66/85 (77.65%), Query Frame = 0
Query:   13 RMSASEDAFVPDMDRRVAVNLILGGAVGVNVLGLAIPYLAFFVPPGSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIK 97
            +M+ASE+ ++ D +RR  +NLI+ GA G+ VLGL +PY+AFFVPPGSGG  GGV AKDA+GND+ ++ +LA   AG R LA+G+K
Sbjct:   33 QMAASEELYIDD-ERRFIMNLIMVGAGGLTVLGLGVPYIAFFVPPGSGGGSGGVPAKDALGNDILSKEYLAAKPAGDRSLAQGLK 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97050.17078.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL45_ECTSI1.350e-3669.15Plastoquinol--plastocyanin reductase n=2 Tax=Ectoc... [more]
A0A836CBH8_9STRA5.130e-3669.66Plastoquinol--plastocyanin reductase n=1 Tax=Tribo... [more]
A0A6H5J703_9PHAE1.150e-3565.63Rieske domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YPA4_9STRA1.450e-3567.35Plastoquinol--plastocyanin reductase n=1 Tax=Tribo... [more]
A0A7S1U2M5_9STRA3.230e-3263.04Plastoquinol--plastocyanin reductase n=2 Tax=Phaeo... [more]
W7TXJ0_9STRA1.740e-2860.47Plastoquinol--plastocyanin reductase n=2 Tax=Monod... [more]
A0A835ZDT9_9STRA3.020e-2663.53Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
A0A2W7A8T1_9CYAN8.480e-2662.20Cytochrome b6-f complex iron-sulfur subunit n=12 T... [more]
A0A427ANW3_ENSVE1.230e-2461.84Uncharacterized protein (Fragment) n=1 Tax=Ensete ... [more]
A0A1Z5JXY9_FISSO4.260e-2456.47Cytochrome b6-f complex iron-sulfur subunit n=2 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.700coord: 13..59
e-value: 1.8E-9
score: 39.2
NoneNo IPR availablePANTHERPTHR10134:SF5CYTOCHROME B6-F COMPLEX IRON-SULFUR SUBUNIT, CHLOROPLASTICcoord: 10..97
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 53..102
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..52
NoneNo IPR availableSUPERFAMILY81502ISP transmembrane anchorcoord: 20..57
NoneNo IPR availableTMHMMTMhelixcoord: 33..55
IPR014909Cytochrome b6-f complex Fe-S subunitPFAMPF08802CytB6-F_Fe-Scoord: 22..58
e-value: 2.1E-11
score: 43.6
IPR014349Rieske iron-sulphur proteinPANTHERPTHR10134CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIALcoord: 10..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97050contigH-elongata_contig97050:264..572 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97050.17078.1mRNA_H-elongata_contig97050.17078.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig97050 264..572 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig97050.17078.1 ID=prot_H-elongata_contig97050.17078.1|Name=mRNA_H-elongata_contig97050.17078.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
QSVAAKASTKAMRMSASEDAFVPDMDRRVAVNLILGGAVGVNVLGLAIPY
LAFFVPPGSGGAGGGVVAKDAIGNDVTAESWLATHTAGSRELAEGIKVGG
SD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014909Cyt_b6-f_cplx_Fe-S_su
IPR014349Rieske_Fe-S_prot