prot_H-elongata_contig96866.17061.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig96866.17061.1
Unique Nameprot_H-elongata_contig96866.17061.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length182
Homology
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Match: A0A0A9XD75_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XD75_LYGHE)

HSP 1 Score: 89.0 bits (219), Expect = 2.860e-17
Identity = 61/176 (34.66%), Postives = 92/176 (52.27%), Query Frame = 0
Query:   10 AATQRGLWDIMKFHQVLGHPEEQITRNTARMA-GVQLSG-IWRPCVHCSESRVRRYAVPKSTENQADRRTGRLFIDLSGPFHETSLGGNRFVMLCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGKWHGQ-FLSFLSELGIKRESTPPYTPQYIGVVER 182
            A +   LW     H+ +GH         ++MA GV+ S  +   C  C+  +  R    K ++++A      L +DL GP    S+GG RF+   + + +R+  V FLKHKSDA    +D         GLKI +IRTDGG ++  Q F ++L++LG++ + T  YT Q  GVVER
Sbjct:  186 AKSSSALW-----HRRMGHLNRARMAQLSKMAVGVENSSPLQSVCEVCALGKQARLPF-KPSKHRAKNILDLLHLDLCGPMETASIGGKRFMFTIVDDCSRYTHVFFLKHKSDAFAVFKDFQTLVERQMGLKIKMIRTDGGTEFVNQAFKNYLADLGVRHQQTVRYTSQQNGVVER 355          
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Match: A0A535S533_9CHLR (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535S533_9CHLR)

HSP 1 Score: 87.0 bits (214), Expect = 1.340e-16
Identity = 64/187 (34.22%), Postives = 94/187 (50.27%), Query Frame = 0
Query:    4 PTETALAATQRGLWD------IMKFHQVLGHPEEQITRNTARMAG-VQLSGIWRPCVHCSESRVRRYAVPKSTENQADRRTGRLFIDLSGPFHETSLGGNRFVMLCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGKWHGQ-FLSFLSELGIKRESTPPYTPQYIGVVER 182
            P ETA+AAT   + D        K+HQ LGH   ++ +    +AG V  +     C  C   +  R    +  + +A R    +  DL GP   TS GG R+ M  I +++R+KMV FLK KS+A +  +++        G KI  I++D G ++    F  +L+  GI+ E T PYTPQ  GV ER
Sbjct:  432 PEETAMAATTNDIDDNKDNNNARKWHQRLGHAPARVIQAIPELAGTVSTTTTKTICESCIMGKFIRKPF-QLLQRRATRPLELVHTDLCGPMETTSTGGARYFMTFIDDYSRYKMVYFLKKKSEAFDKFKEMKAYTENLCGHKILRIKSDNGTEYTSNAFAHYLTTEGIQAERTTPYTPQQNGVAER 617          
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Match: A0A4Y2Q694_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2Q694_ARAVE)

HSP 1 Score: 86.3 bits (212), Expect = 2.520e-16
Identity = 58/174 (33.33%), Postives = 93/174 (53.45%), Query Frame = 0
Query:   18 DIMKFHQVLGHP-----EEQITRNTARMAGVQLSGIWRPCVHCSESRVRRYAVPKSTENQADRRTGRLFI---DLSGPFHETSLGGNRFVMLCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGKW-HGQFLSFLSELGIKRESTPPYTPQYIGVVER 182
            D++K+H  LGH      +E I R   R   +  S +   C  C+ +++ R   PK    +++R T  L I   DL GP    S+G + + M  I  ++R+ +V+FLK KSDA  A ++I   +   + +KI +  +D GG++ + +F +FL   GIKR  T PY P+  G+ ER
Sbjct:  433 DLVKWHCRLGHLNMKDLKESIKRGNIRGLNISKSPVNLDCEICAINKLTRAPFPK----KSNRVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKSKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEFINTEFDNFLKTNGIKRRLTAPYCPEQSGIAER 602          
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Match: A0A4Y2RJW2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2RJW2_ARAVE)

HSP 1 Score: 85.5 bits (210), Expect = 4.290e-16
Identity = 58/174 (33.33%), Postives = 93/174 (53.45%), Query Frame = 0
Query:   18 DIMKFHQVLGHP-----EEQITRNTARMAGVQLSGIWRPCVHCSESRVRRYAVPKSTENQADRRTGRLFI---DLSGPFHETSLGGNRFVMLCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGKW-HGQFLSFLSELGIKRESTPPYTPQYIGVVER 182
            D++K+H  LGH      +E I R   R   +  S +   C  C+ +++ R   PK    +++R T  L I   DL GP    S+G + + M  I  ++R+ +V+FLK KSDA  A ++I   +   + +KI +  +D GG++ + +F +FL   GIKR  T PY P+  G+ ER
Sbjct:  433 DLVKWHCRLGHLNMKDLKESIKRGNIRGLNISKSPVNFDCEICAINKLTRAPFPK----KSNRVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKTKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEFINTEFDNFLKTNGIKRRLTAPYCPEQSGIAER 602          
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Match: UPI001C71C67F (uncharacterized protein LOC122296892 n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71C67F)

HSP 1 Score: 85.5 bits (210), Expect = 4.350e-16
Identity = 57/167 (34.13%), Postives = 85/167 (50.90%), Query Frame = 0
Query:   22 FHQVLGHPEEQITRNTARMAGV----QLSGIWRP-CVHCSESRVRRYAVPKSTENQADRRTGRLFIDLSGPFHETSLGGNRFVMLCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGKWHGQFL-SFLSELGIKRESTPPYTPQYIGVVER 182
            +HQ LGH   +     A+   V    +L  +  P C  C   +  R A  K+T    ++    L IDL GP    SLGG R++++ + +FTR+  V FL+ K++A N ++ +       +G  I  IR+D G ++    L SF  E GI +E + P TPQ  GVVER
Sbjct:  619 WHQRLGHVNHKNLSKIAKKDMVIGLPELGKVETPVCGSCQLGKQVRIAHKKTTAILTEQPLDLLHIDLMGPSRTESLGGKRYILVMVEDFTRYSWVEFLREKAEAPNVIKILCKKLQNEQGKVIVRIRSDHGREFDNSNLESFCDEEGISQEFSAPITPQQNGVVER 785          
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Match: A0A4Y2HGZ9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HGZ9_ARAVE)

HSP 1 Score: 85.5 bits (210), Expect = 4.500e-16
Identity = 58/174 (33.33%), Postives = 93/174 (53.45%), Query Frame = 0
Query:   18 DIMKFHQVLGHP-----EEQITRNTARMAGVQLSGIWRPCVHCSESRVRRYAVPKSTENQADRRTGRLFI---DLSGPFHETSLGGNRFVMLCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGKW-HGQFLSFLSELGIKRESTPPYTPQYIGVVER 182
            D++K+H  LGH      +E I R   R   +  S +   C  C+ +++ R   PK    +++R T  L I   DL GP    S+G + + M  I  ++R+ +V+FLK KSDA  A ++I   +   + +KI +  +D GG++ + +F +FL   GIKR  T PY P+  G+ ER
Sbjct:  433 DLVKWHCRLGHLNMKDLKESIKRGNIRGLNISKSPVNFDCEICAINKLTRAPFPK----KSNRVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKTKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEFINTEFDNFLKTNGIKRRLTAPYCPEQSGIAER 602          
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Match: A0A1Y1LP39_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LP39_PHOPY)

HSP 1 Score: 84.7 bits (208), Expect = 7.950e-16
Identity = 54/166 (32.53%), Postives = 83/166 (50.00%), Query Frame = 0
Query:   19 IMKFHQVLGHPE-EQITRNTARMAGVQLSGIWRPCVHCSESRVRRYAVPKSTENQADRRTGRLFIDLSGPFHETSLGGNRFVMLCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGKW-HGQFLSFLSELGIKRESTPPYTPQYIGVVER 182
            IM +H+ L H     + R    + G++ SG    CV C + +  R   P+   ++A      L  DL GP +  S+GG R+V+  I ++TR   V FLK K++    L +         G +I  IR+D GG++ + Q  +F SE GI  + T  +TP+  GV ER
Sbjct:   90 IMLWHRRLAHLSCGGLDRLRNMVQGLEYSGTMEACVSCIKGKQHRLPFPQKKVHRATEVLELLHSDLCGPMNVPSIGGARYVLTLIDDYTRMTFVSFLKTKNEVFTKLSEFRTYIENQTGKRIKAIRSDRGGEYVNKQLETFFSETGIHHQLTIAHTPEQNGVAER 255          
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Match: A0A6V7M0T8_9HYME (Uncharacterized protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M0T8_9HYME)

HSP 1 Score: 84.7 bits (208), Expect = 8.560e-16
Identity = 54/183 (29.51%), Postives = 87/183 (47.54%), Query Frame = 0
Query:    6 ETALAATQRGLWDIMKFHQVLGHP-----EEQITRNTARMAGVQLSGIWRPCVHCSESRVRRYAVPKSTENQADRRTGRLFIDLSGPFHETSLGGNRFVMLCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGKWHGQ-FLSFLSELGIKRESTPPYTPQYIGVVER 182
            E A  A+      I  +H+  GH      E+ I    A    ++     + C  C + ++ R   PK + ++  +R   L +DL GP    ++GG R++M  I +F+R+  V  L  KS     +RD I +     G K    R+D GG++     + FL++ G+K + T PYTP+  GV ER
Sbjct:  298 EKASGASHHNDKCIHTWHRRFGHRDPKAIEKLIENELAEGVEIKKCNEIQVCSSCIKGKLSRKPFPKESLSKTTKRLELLHMDLCGPMPTKTVGGRRYLMTIIDDFSRYTFVYLLTEKSQDERVIRDFIAEMKTQYGEKPKCFRSDRGGEFMSHDLMQFLAKQGVKVQRTAPYTPEQNGVAER 480          
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Match: A0A177WWT4_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WWT4_BATDL)

HSP 1 Score: 84.3 bits (207), Expect = 1.120e-15
Identity = 51/171 (29.82%), Postives = 87/171 (50.88%), Query Frame = 0
Query:   18 DIMKFHQVLGHPEEQITRNTA-RMAGVQL----SGIWRPCVHCSESRVRRYAVPKSTENQADRRTGRLFIDLSGPFHETSLGGNRFVMLCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGKWHGQ-FLSFLSELGIKRESTPPYTPQYIGVVER 182
            D   +H+ LGH   +  +N A +  G+ +    +     CV C + +  R+  PK + + A +    L +DL GPFH+T+LGG ++ ++ + +++R+  +  +  K       ++ +      +GL +  IRTD GG++    F  FL   GI  + T PYTPQ  GV ER
Sbjct:  308 DTAGWHKRLGHINVESIKNLADKSEGLDIIPGKTKERSQCVACIKGKAVRHPFPKRSTHVATQVNVLLHMDLEGPFHDTALGGYKYYLIIVDDYSRYSHLYPMISKDQTFQRFKEHVAAVELSKGLPVRAIRTDNGGEFTSSAFQQFLKLKGIAVQRTTPYTPQQNGVAER 478          
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Match: A0A177VYH4_BATDL (Uncharacterized protein (Fragment) n=5 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177VYH4_BATDL)

HSP 1 Score: 84.3 bits (207), Expect = 1.170e-15
Identity = 51/171 (29.82%), Postives = 87/171 (50.88%), Query Frame = 0
Query:   18 DIMKFHQVLGHPEEQITRNTA-RMAGVQL----SGIWRPCVHCSESRVRRYAVPKSTENQADRRTGRLFIDLSGPFHETSLGGNRFVMLCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGKWHGQ-FLSFLSELGIKRESTPPYTPQYIGVVER 182
            D   +H+ LGH   +  +N A +  G+ +    +     CV C + +  R+  PK + + A +    L +DL GPFH+T+LGG ++ ++ + +++R+  +  +  K       ++ +      +GL +  IRTD GG++    F  FL   GI  + T PYTPQ  GV ER
Sbjct:  519 DTAGWHKRLGHINVESIKNLADKSEGLDIIPGKTKERSQCVACIKGKAVRHPFPKRSTHVATQVNVLLHMDLEGPFHDTALGGYKYYLIIVDDYSRYSHLYPMISKDQTFQRFKEHVAAVELSKGLPVRAIRTDNGGEFTSSAFQQFLKLKGIAVQRTTPYTPQQNGVAER 689          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig96866.17061.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9XD75_LYGHE2.860e-1734.66Retrovirus-related Pol polyprotein from transposon... [more]
A0A535S533_9CHLR1.340e-1634.22DDE-type integrase/transposase/recombinase (Fragme... [more]
A0A4Y2Q694_ARAVE2.520e-1633.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2RJW2_ARAVE4.290e-1633.33Retrovirus-related Pol polyprotein from transposon... [more]
UPI001C71C67F4.350e-1634.13uncharacterized protein LOC122296892 n=1 Tax=Carya... [more]
A0A4Y2HGZ9_ARAVE4.500e-1633.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y1LP39_PHOPY7.950e-1632.53Integrase catalytic domain-containing protein (Fra... [more]
A0A6V7M0T8_9HYME8.560e-1629.51Uncharacterized protein n=1 Tax=Bracon brevicornis... [more]
A0A177WWT4_BATDL1.120e-1529.82Uncharacterized protein n=1 Tax=Batrachochytrium d... [more]
A0A177VYH4_BATDL1.170e-1529.82Uncharacterized protein (Fragment) n=5 Tax=Batrach... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 80..182
e-value: 2.7E-8
score: 34.0
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 62..182
score: 13.944
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 66..182
e-value: 2.0E-15
score: 58.5
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 15..182
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 15..182
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 74..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig96866contigH-elongata_contig96866:18..563 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig96866.17061.1mRNA_H-elongata_contig96866.17061.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig96866 18..563 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig96866.17061.1 ID=prot_H-elongata_contig96866.17061.1|Name=mRNA_H-elongata_contig96866.17061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
PKPPTETALAATQRGLWDIMKFHQVLGHPEEQITRNTARMAGVQLSGIWR
PCVHCSESRVRRYAVPKSTENQADRRTGRLFIDLSGPFHETSLGGNRFVM
LCIHNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGVIRTDGGGK
WHGQFLSFLSELGIKRESTPPYTPQYIGVVER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf